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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040028 ID=TCONS_00040028|Name=TCONS_00040028|organism=Clytia hemisphaerica|type=transcript|length=1897bpRun BLAST on NCBI protein sequence of TCONS_00040028-protein >TCONS_00040028-protein ID=TCONS_00040028-protein|Name=TCONS_00040028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp MHVRFLRNKGNLTDQIMQLHYWCLAVVLLKLASSQILEPCRKDAYPTHEKRun BLAST on NCBI transcript from alignment at sc0002273:24550..33433+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040028 ID=TCONS_00040028|Name=TCONS_00040028|organism=Clytia hemisphaerica|type=transcript|length=8884bp|location=Sequence derived from alignment at sc0002273:24550..33433+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002273:24550..33433+ >TCONS_00040028 ID=TCONS_00040028|Name=TCONS_00040028|organism=Clytia hemisphaerica|type=CDS|length=20247bp|location=Sequence derived from alignment at sc0002273:24550..33433+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00040028 vs. Swiss-Prot (Human)
Match: ASAH1 (Acid ceramidase OS=Homo sapiens GN=ASAH1 PE=1 SV=5) HSP 1 Score: 350.132 bits (897), Expect = 8.386e-114 Identity = 158/367 (43.05%), Postives = 242/367 (65.94%), Query Frame = 2
Query: 389 EPCRKDAYPTHEKTRK--IQRFALNLDLPGDQRWAEIVQPHTQQIKNVIQVIKDL----VPR-KVIEIINEIFPILMVRIPQPYADEIQGISRATGIPLGEIILYNIFYEINPFCTSIVGQDESGKLFHGRNLDFGLMMGWDNANNTWILTERLRDAMIIVDFQRDGKTIYSGAHFVGYIGMLTAVKKNAFTMTINARFGLEDKYMGILQWLDGQSNGQMVAFLSRQTFENATNYDSAMETFSNAELVAPIYFIIGGTKKNEGAVITRSRTKPDDVMTLE-RNNSWYLLQTNYDNWKKPLFVDDRRTPGNKCMKELTQKGMNFKGLFNVLSTKPNYNKMTTYTALMQVDEGTLDVYLRDCPDPCYPW 1465
E CRK YP T + + + +NLDLP +RW E++ +K ++ +K++ VP K++++++E P L+ P P+ +E++GI+ T IPLGEII +NIFYE+ CTSIV +D+ G L HGRN+DFG+ +GW+ N+TW++TE+L+ + +DFQR+ KT++ + F GY+GMLT K F++T+N RF + Y+GIL+W+ G+ + + FL+R EN+T+Y+ A + +++AP YFI+GG + EG VITR R + DV L+ + WY++QTNYD WK P F+DDRRTP C+ +Q+ ++F+ +++VLSTKP NK+T YT L+ V +G + YLRDCPDPC W
Sbjct: 29 EDCRKSTYPPSGPTYRGAVPWYTINLDLPPYKRWHELMLDKAPVLKVIVNSLKNMINTFVPSGKIMQVVDEKLPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRNMDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFSLTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKILAPAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRRTPAKMCLNRTSQENISFETMYDVLSTKPVLNKLTVYTTLIDVTKGQFETYLRDCPDPCIGW 395 The following BLAST results are available for this feature:
BLAST of TCONS_00040028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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