TCONS_00040027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040027
Unique NameTCONS_00040027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1897

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040027 ID=TCONS_00040027|Name=TCONS_00040027|organism=Clytia hemisphaerica|type=transcript|length=1897bp
ctaacacaaggacaaaaatactcacaaaatggtgaaaataagaaaatgtt
aagaacatttttaggcttaaaactcataatttttggatgttcctattaaa
aaaacgtgcattgAAACTCCTAGGGCATTATTTCCTTCTGTAATCTTATG
TTAGCACTGTATTAGGTAGTCCTCTGTTGTAATTCGAGTGTTCAATTCAC
ATGATAAACAGAGAAGAAATAGAATATTCCTTTTGCGCAAAAATCGGATA
CAAAAATTCCCAGATACATAACTTTTTATGCATGTTAGATTTCTCAGGAA
CAAGGGAAATTTAACGGACCAAATCATGCAGCTACATTATTGGTGCTTAG
CTGTTGTGCTTTTAAAACTGGCGTCATCCCAGATTTTGGAGCCTTGTCGC
AAAGATGCCTACCCAACTCACGAAAAAACGCGAAAAATACAAAGATTTGC
ATTGAATTTGGATTTGCCCGGTGATCAGAGATGGGCAGAGATTGTTCAAC
CTCATACACAACAgATCAAGAATGTCATTCAAGTCATCAAAGATCTTGTT
CCTCGaaaagtcattgaaatcatcaaCGAAATTTTTccgATCCTGATGGT
ACGGATACCACAACCTTATGCTGATGAAATTCAAGGAATCTCCCGAGCAA
CTGGAATACCATTAGGCGAAATAATCTTGTACAACATATTTTACGAAATC
AATCCTTTCTGTACTTCGATCGTTGGACAAGATGAATCTGGAAAATTATT
TCACGGAAGAAATTTGGACTTTGGCTTGATGATGGGATGGGACAATGCTA
ACAATACATGGATTTTAACAGAACGATTGAGAGATGCGATGATCATTGTA
GACTTTCAGCGTGATGGAAAGACAATTTACAGTGGAGCTCATTTTGTTGG
CTACATTGGCATGCTTACTGCAGTCAAAAAGAACGCTTTTACAATGACAA
TCAATGCACGTTTTGGCCTTGAAGATAAATACATGGgtatattacaatGG
TTAGATGGACAATCTAACGGACAGATGGTGGCTTTCTTATCTAGACAAAC
TTTCGAAAATGCTACAAATTACGACTCAGCCATGGAGACTTTTTCGAATG
CGGAACTTGTGGCACCCATTTATTTTATCATCGGTGGAACAAAGAAAAAC
GAAGGAGCTGTGATTACTCGATCACGTACCaaacctgatgacgtcatgac
attGGAGAGGAACAATTCATGGTACCTTTTACAAACGAATTATGATAACT
GGAAAAAACCTTTATTTGTTGATGACAGAAGAACTCCTGGCAACAAATGC
ATGAAAGAGCTAACCCAAAAGGGAATGAATTTCAAAGGATTGTTCAACGT
TCTTTCAACCAAACCCAACTACaataagATGACAACGTACACAGCGCTTA
TGCAAGTTGATGAAGGAACTCTTGATGTTTATTTGCGAGACTGTCCAGAT
CCATGTTATCCCTGGTGAAGTAGACGAACGCATCAACAATCAAGAGAAAT
GGCAaactcgttccctgcgtattatcagctttttgacgCCTACTGATATA
AGCGCTGGATAATACCCTGATATTGTCTGGTTTTCGAATGCAAAAGACTA
CCTAATTAAAAATCAAACGTCAGATATCCCTCTCAGTGACTGAGCATCTG
GCCTACAcaagggtattctctggcgtctattagtaacgtaaataaagcct
ggaatacactgGGACGAGATTGAAGAAACGGAACCCCTTTCAATTCTGAA
TACAAccttaatttgttgtttttttttgaatttttttagatattcGATAA
TTTTTGTAAATCCTTCTTGTAAAAAGGAATTTAGATATGGAAATTGTATA
GTGAAAATATAATTTATGAACTAGTAAAACCCAAAATTTAATCACTG
Run BLAST on NCBI

transcript from alignment at sc0002273:24550..33433+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040027 ID=TCONS_00040027|Name=TCONS_00040027|organism=Clytia hemisphaerica|type=transcript|length=8884bp|location=Sequence derived from alignment at sc0002273:24550..33433+ (Clytia hemisphaerica)
ctaacacaaggacaaaaatactcacaaaatggtgaaaataagaaaatgtt
aagaacatttttaggcttaaaactcataatttttggatgttcctattaaa
aaaacgtgcattgAAACTCCTAGGGCATTATTTCCTTCTGTAATCTTATG
TTAGCACTGTATTAGGTAGTCCTCTGTTGTAATTCGAGTGTTCAATTCAC
ATGATAAACAGAGAAGAAATAGAATATTCCTTTTGCGCAAAAATCGGATA
CAAAAATTCCCAGATACATAACTTTTTATGCATGTTAGATTTCTCAGGAA
CAAGGGAAATTTAACGGACCAAATCATGCAGCTACATTATTGGTGCTTAG
CTGTTGTGCTTTTAAAACTGGCGTCATCCCAGGTAtaactttttatcttt
taatcGTTTTTTTATAACATCCTTTTGCTGGAATTCCTCCATCACTCCTC
CTCATTTTATTTTTGCACGTAATTTTTCTGTTTAGATTTTGGAGCCTTGT
CGCAAAGATGCCTACCCAACTCACGAAAAGTGAGTGAaaacattttggtc
attttgatgtctatgttatttttttcattataattacacccctgtctcag
tccCCGATGGGACTTTTCGAGGGGTAATATTTAAATGACGTGGGAGtgga
aatttttataattttgtcgGTGGGGTTTCAAATTCTATTATCTGGACTGG
AGCTACAAAATTCTGTTGGGTCACTATGAACTGCTAATGCGGTCACTTTT
TTTAGATAAATGTTTCATCAGAGAGGAAGGAGAATTTGTAACTTGTTCTC
TATTTCATAGAACGCGAAAAATACAAAGATTTGCATTGAATTTGGATTTG
CCCGGTGATCAGAGATGGGCAGAGATTGTTCAACCTCATACACAACAggt
actacatgttttttttataagcataaaaatTTGGCTCGGTGATGTTTAAG
TTGAGGACTTAACAACGTTGAAAAATGCTTATAAAGATGCTcaagcaaaa
ttttagagaactttcgaaaaaaaaaattgttccaaAAACCGCCAAAAACA
GGCAAAATctggaaaattcatttttcgtaggctcaggGTAATGCTTATCA
CATGCTTAAGTTTTTGCCATATCTGAgtctagatatgcttataaatgcag
ggcttataaaaaacatgtaatcagAACTTTCACACCATCTAACCCTCTGT
ATTTTCTAGCTTACACCAGAGACTATTTTTGACTCAACTTTGCTTGGTGA
TTCTTGATTGCCCTGAGTTCAGTGAAATAAACTAAAGGATACTGCCATTT
AAGTTTTCACTTTGGTTTTCAATGAAATATCCATGAAAAACACATCTTTA
ATGGCGTCAGTATATAGTACATGCACTAGACAATAagcagaagcagccgg
cggagagatttttagaaatatgtgttcttatcttctaggagaccaaatgt
tatgacctttcaattttttatacaaatgatgtgtacTGATTTCTAGGAAC
cctttatcgcactatttgtctccctaaacttatcactACATTATGGTTTG
ATGTGCtctaaaatttaggaaaaacagtttgccaagataaacctgtaaga
tatttgtttttctccacgcaacggattagaataggtggattaagaactca
tagaaaacactcctcgttaggttatcaaacttttttacgagtttgctagc
aattaaaacttgataagttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATTTCTTAGTTATAGACCATACGTTAATTTTCAC
TTATCTGAAGATTGCCATtgacaaaagattaaaaatttacattaaaactg
gTCTAGCGTTTGTTGATGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNataaattggaaaattgttctt
ataaaaacaatgaaaaaactaaacgaggagtgcgcagagtcatttacaga
tttttcttgtaacaatgagaagacaatggatctctcatgggagcaacgag
agaagttaatccacctattctaatccgttgctcCACGagagatgtgttct
gaaaatttcaagggtCACTAGGCAACAGCATTACATCAATTTGCTTAAAA
GATGTGTtatgaagctttctagggttgcctagacaacaagaacacgttag
atgacATTGATTATACCCTTGTCtcatcagaacacatcattatttctagc
tgattaattttcgaagatctgatcagaacagataaaaatttctagctgaa
atatgctctcagaacacatcggaaaaaaaggtcgcctcgccggctgcttt
cgaatAAGCTATCGACGAAGTGAAATTTCCAACAACAAATATTCTTAACA
ACAAGTATTTTAAATTATCAAAGACATGGTTGTATAGATTTGCTACAATT
TAGGTAATTGCGAAAACTGTAACAAATATACACGATATATAGAATTCCCC
CAgtaaatttttatctttttatctcTTTATAAGGGTTTGGATGATTTTTG
CGTTCTCCATTACTTTTTAGATCAAGAATGTCATTCAAGTCATCAAAGAT
CTTGTTCCTCGaaaagtcattgaaatcatcaaCGAAATTTTTGTAAGTGA
TAATACAGTGGAATTTCCAATCTTCGTATTTGAACGGTGGACGATATTTC
TATCCTTCTTCTTACTAGTGCTTACCCCCCCCAGttggcacaaaacgttg
tttcaacgttcatctaacgttgtatggacgttgtgaacattaggtggacg
ttgaaacaaccttGCGTCTTCTTGTTTGCTAACTTATTAGTTTGGTATGA
AaacctatttttcattttcagccgATCCTGATGGTACGGATACCACAACC
TTATGCTGATGAAATTCAAGGAATCTCCCGAGCAACTGGAATACCATTAG
GTGAATATGAGAAGACCTATTTCTTGTTTCCAATGGGAATCTCAAACTTG
TTTCTCAAAAgttatttttccctttttgtTAGGAATAGGAGAGTGGTCTT
CCAGCAATctagacacccccttctcacagactcggtAGGAAAATGACGGA
CTCTGAAACTCGACGGGGATTGATAtacccatattttttatggctgggga
tttcaattctttttttttcaagtccgaaaattcagtggggacgagaaaaa
tattgaatattttgcagtgaggattggttaaTTTGATGATcttcagtgga
gacaaaaattggaggataattttccaccggggacgatattttggccaagg
GGCCaaaaggggtcccagtgggtctatgagaaaggggtgtatctATACTC
AATTGGTATTCATGCACATAACATTCTTATATTCCCGAAGCTGCTCTACG
CTTCTACAGAAAGAAGACTGATAGCTTTTAggaaaaaatcaataatttct
aacaattttttttcacttccaGGCGAAATAATCTTGTACAACATATTTTA
CGAAATCAATCCTTTCTGTACTTCGATCGTTGGACAAGATGAATCTGGTA
TGATTACTCGACTTCCTTTCATACTATAAGCAGCTCCTAAGCCTTAAGGC
TGGTTTTGCGTTGAGAACAGcctaattttcttttaaaattggtaATTTGC
TTATTGAAACGTACAAAGAAttagtttgtataaaaaacgtttaaatcAGA
AAAGAGCATCTTTGGCTTTACTTATCCCTACTGTCATACAGACTTGTTTA
AGTAATGAATATTATATTGTNCGGGGATTGATAtacccatattttttatg
gctggggatttcaattctttttttttcaagtccgaaaattcagtggggac
gagaaaaatattgaatattttgcagtgaggattggttaaTTTGATGATct
tcagtggagacaaaaattggaggataattttccaccggggacgatatttt
ggccaaggGGCCaaaaggggtcccagtgggtctatgagaaaggggtgtat
ctATACTCAATTGGTATTCATGCACATAACATTCTTATATTCCCGAAGCT
GCTCTACGCTTCTACAGAAAGAAGACTGATAGCTTTTAggaaaaaatcaa
taatttcTAACAATCTTTTTTCACTTCCAGGCGAAATAATCTTGTACAAC
ATATTTTACGAAATCAATCCTTTCTGTACTTCGATCGTTGGACAAGATGA
ATCTGGTATGATTACTCGACTTCCTTTCATACTATAAGCAGCTCCTAAGC
CTTAAGGCTGGTTTTGCGTTGAGAACAGcctaattttcttttaaaattgg
taATTTGCTTATTGAAACGTACAAAGAATTAGTTTGTACAAAAAACGTTT
AAATCAGAAAAGAGCATCTTTGGCTTTACTTATCCCTACTGTCATACAGA
CTTGTTTAAGTAATGAATATTATATTGTAATTTCGTAATTCTTTTCAGGA
AAATTATTTCACGGAAGAAATTTGGACTTTGGCTTGATGATGGGGTAAGA
ACGTGTTTTTAAGAGGTTCTCAAAATATGTTTTCGCCCTTGTCCATTGGT
CCATTCTATTTGAATAGCATACCACAGTGAATCttaaaatagacattgat
ttttctgtttgaccgaaattcaatcccatcacccttcgCGTTAACTACGC
CTGCATGCAAATTACACtcaactaaaaagaaaaagtaatgactttcacga
ctttttaattaagacgaaaaggattgtgggattgattttcggtcaagcgt
taaaagtaataattatgacgtttgcataacggTGTGCTATTTCCGTTCTT
TGATTTAGATGGGACAATGCTAACAATACATGGATTTTAACAGAACGATT
GAGAGATGCGATGATCATTGTAGACTTTCAGGTATCATTAAGTTTTCGCT
TGTCCTTTAATAACGAAGAAAATCCAGAATTTTGTGAGCTTTTTTATCCT
AAAAAAATGACACTTCTTTTGCCTAGGTATACTCCTTACTCCAAGAGTTA
TCCTTACAACGCCACTGATTGATGTACTGTATTAAAGGAAATTCGACCTT
TACTACAAAGAAAATTGTCTCATTTCTGctcatttttcatttctattGTA
TTACGATTATCTAGCGTGATGGAAAGACAATTTACAGTGGAGCTCATTTT
GTTGGCTACATTGGCATGCTTACTGCAGTCAAAAAGGTATCCTTCCTTAA
AATAACATTCCGTCTGATATTGTAGAGAAAAATGTCCGAAATTTCCGATA
TCCCcgctggcacaaaacgttgtttcaacgtttatttaacgttcagaACG
TCCTGATAACGTTAGATGAGCGTCGAAACAAGGCTGTGTGCAAGCTGGGA
TCgtatttaaaaagtatttcaagaCCATGAAAAATTTCACATGGAGGTTT
TCCTTTCTAGCTTTTAGATTCCAATTATTGTGTAGTTTCTTTTGTATTTC
GCAGAACGCTTTTACAATGACAATCAATGCACGTTTTGGCCTTGAAGATA
AATACATGGGTAAGTTCGAATCATCCTATCAGTGAAAAATACTCTTGTGA
TAAATATCAGGTTAAAGGATaaggggggcactcatatggtccgacccacg
gcatgtggtaggtttttcgagaccctcaAAATGCACTGTAGTACTTCTTT
TAGCTGATTACACTGTAGGGGTGTGTTTTCGAACTGCTGAATCGCCAGTC
TGACAGCAAAAATCTGATGTacctttatagttttgactcgcactaatttt
gatttgttttgcacatcaatctacactgtaataaggGTGAGAAGCTATCG
GTaaaatgtactgtaagggtccgattttgaatgcctattttttggcggca
catgccgtcgtttggaaatcgagtgcccctccCCGGGTTTTTACTCGAAT
ATTTCCGATTCATATCAGACATACATATGTCATATTAATTCAGGTGTCcc
ctattgttttattttgtttcattcTTGTGCTGACTCTTATGCGGTCTTAC
TTCAGTGAGAGAGGGGTTGATACCACGAACAATATTATcgtattttcaaa
ataacaggtatattacaatGGTTAGATGGACAATCTAACGGACAGATGGT
GGCTTTCTTATCTAGACAAACTTTCGAAAATGCTACAAAGTATGGTGTTT
ATTGAGAATCTTTCAAAGTGTTTATAAACCTGTTAAACCTTCAGCGAGTC
GTATCGGATTGTTAAACCATTAGATACAATCTACCAGACCATATgataat
gatgtaatgtttcCAAATATGGCCATAAAATTCGCTAGAATGCTTGCGTA
ATGTGTTTTTTTGTCGTTCTGATGGTCTGGTATTGTTAGATAAACATTTC
TCGTTCAATATCTTTTTTACTTTACGAAACCTTGGCTAATTATTAAAATT
AGAACAATCTCTTACCATAACCGTACCCTCTAGTATCTTTCGTGAGCGTT
ATCGGAATCATCAAAGCCGAAAAGATCGTCAAAGATGGGCACAAGCTCCA
AGTTGAATAGCACCTTGAAAACTTTGTTAATTTCCACTCTTTAGTTACGA
CTCAGCCATGGAGACTTTTTCGAATGCGGAACTTGTGGCACCCATTTATT
TTATCATCGGTGGAACAAAGAAAAACGAAGGAGCTGTGATTACTCGATCA
CGTACCaaacctgatgacgtcatgacgtaattgctttgtttttttatata
gaCTTACGTTCGGTCTTTTAGCCTTCTTAGGTTCCTCTGAAGGACACATT
TTATGTCCTTTCTAAGGACTAATACGAGCCAGAAAAGTCTCTCAATTCTT
TCGAAAACTTGTCTTTTATTAAGAGTCACATGTTCAATAGTTTTGTATCC
AAAAGGtctagattccaaaatcaaatcCGTAAATACCCAACACTTTCCAA
TCATAGTACCCTCCCCTTGCGTTTGCCACGTGAGAACATCGGCTTTCAAA
ATTTATCCAATATGTTACAGTTTTTTCTCATAATATCacaatctttgatt
ttttttacagattGGAGAGGAACAATTCATGGTACCTTTTACAAACGAAT
TATGATAACTGGAAAAAACCTTTATTTGTTGATGACAGAAGAACTCCTGT
AAGTTATACTTGATTTGATAGCACTAAACATGATCGTCCAATCTTTGTTC
AGagacaattttttttcctatcAACTTTATCGACGGGATGAAGNTGATCG
TCCAATCTTTTGTATTATTTCTTGTTCAgagaaaatattctttttccTAT
CAGCTTTATCGACGGGATGAAGTAGAGTTCTTGGCTTTTTGGCTCTTCCg
aatcatttctctcatttttctTATCATAGGGCAACAAATGCATGAAAGAG
CTAACCCAAAAGGTATTGAATCTCTTATCCAATTTATTTTAAAGCTATAc
aaattatgataaaatctGATTGTAGACTGCCAATATACGATCAAGTGAAG
TTTGGCATCGGAtacttttcatttctttatcgCTCTATTTGTTTAATGAT
AAGTCGTAGATTTCGCGATAAAATCTAattcgatcttttatcgatcatTT
TAGGGAATGAATTTCAAAGGATTGTTCAACGTTCTTTCAACCAAACCCAA
CTACaataaggtaaataaaattGTTCATTCAAATTTCTTCCATACATCAA
CGGTTGTTTGAAAGTCTTGAAATATACATTTGCGTTAATGGATTACTGAT
ATCAAGCTTGTGTATTCGTTATATTCATGACTAATGGGTTTTACGGAAGT
ACCCAAAAAGAATGAGTATTTtccactaattttgaatttaaaaaataaaa
ctagaAGTAAACGCTCGGGCTATTCTGGTTGCTTTTCATATAAAACTTTG
CATCATGAATAGGATTTATGGTAAAACCATCGATGGaaaaacttttactt
tttttgcgtTCACAGATGACAACGTACACAGCGCTTATGCAAGTTGATGA
AGGAACTCTTGATGTTTATTTGCGAGACTGTCCAGATCCATGTTATCCCT
GGTGAAGTAGACGAACGCATCAACAATCAAGAGAAATGGCAaactcgttc
cctgcgtattatcagctttttgacgCCTACTGATATAAGCGCTGGATAAT
ACCCTGATATTGTCTGGTTTTCGAATGCAAAAGACTACCTAATTAAAAAT
CAAACGTCAGATATCCCTCTCAGTGACTGAGCATCTGGCCTACAcaaggg
tattctctggcgtctattagtaacgtaaataaagcctggaatacactgGG
ACGAGATTGAAGAAACGGAACCCCTTTCAATTCTGAATACAAccttaatt
tgttgtttttttttgaatttttttagatattcGATAATTTTTGTAAATCC
TTCTTGTAAAAAGGAATTTAGATATGGAAATTGTATAGTGAAAATATAAT
TTATGAACTAGTAAAACCCAAAATTTAATCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024249XLOC_024249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040027-exon-sc0002273-1491911889:24550..24931TCONS_00040027-exon-sc0002273-1491911889:24550..24931Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:24550..24931TCONS_00040027-exon-sc0002273-1510915933:24550..24931Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:24550..24931TCONS_00040027-exon-sc0002273-1575043694:24550..24931Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:25035..25078TCONS_00040027-exon-sc0002273-1491911889:25035..25078Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:25035..25078TCONS_00040027-exon-sc0002273-1510915933:25035..25078Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:25035..25078TCONS_00040027-exon-sc0002273-1575043694:25035..25078Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:25360..25447TCONS_00040027-exon-sc0002273-1491911889:25360..25447Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:25360..25447TCONS_00040027-exon-sc0002273-1510915933:25360..25447Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:25360..25447TCONS_00040027-exon-sc0002273-1575043694:25360..25447Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:27570..27641TCONS_00040027-exon-sc0002273-1491911889:27570..27641Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:27570..27641TCONS_00040027-exon-sc0002273-1510915933:27570..27641Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:27570..27641TCONS_00040027-exon-sc0002273-1575043694:27570..27641Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:27871..27949TCONS_00040027-exon-sc0002273-1491911889:27871..27949Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:27871..27949TCONS_00040027-exon-sc0002273-1510915933:27871..27949Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:27871..27949TCONS_00040027-exon-sc0002273-1575043694:27871..27949Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:28472..28546TCONS_00040027-exon-sc0002273-1491911889:28472..28546Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:28472..28546TCONS_00040027-exon-sc0002273-1510915933:28472..28546Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:28472..28546TCONS_00040027-exon-sc0002273-1575043694:28472..28546Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:29448..29493TCONS_00040027-exon-sc0002273-1491911889:29448..29493Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:29448..29493TCONS_00040027-exon-sc0002273-1510915933:29448..29493Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:29448..29493TCONS_00040027-exon-sc0002273-1575043694:29448..29493Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:29808..29880TCONS_00040027-exon-sc0002273-1491911889:29808..29880Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:29808..29880TCONS_00040027-exon-sc0002273-1510915933:29808..29880Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:29808..29880TCONS_00040027-exon-sc0002273-1575043694:29808..29880Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:30114..30185TCONS_00040027-exon-sc0002273-1491911889:30114..30185Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:30114..30185TCONS_00040027-exon-sc0002273-1510915933:30114..30185Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:30114..30185TCONS_00040027-exon-sc0002273-1575043694:30114..30185Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:30454..30508TCONS_00040027-exon-sc0002273-1491911889:30454..30508Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:30454..30508TCONS_00040027-exon-sc0002273-1510915933:30454..30508Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:30454..30508TCONS_00040027-exon-sc0002273-1575043694:30454..30508Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:31057..31138TCONS_00040027-exon-sc0002273-1491911889:31057..31138Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:31057..31138TCONS_00040027-exon-sc0002273-1510915933:31057..31138Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:31057..31138TCONS_00040027-exon-sc0002273-1575043694:31057..31138Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:31544..31675TCONS_00040027-exon-sc0002273-1491911889:31544..31675Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:31544..31675TCONS_00040027-exon-sc0002273-1510915933:31544..31675Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:31544..31675TCONS_00040027-exon-sc0002273-1575043694:31544..31675Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:32010..32097TCONS_00040027-exon-sc0002273-1491911889:32010..32097Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:32010..32097TCONS_00040027-exon-sc0002273-1510915933:32010..32097Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:32010..32097TCONS_00040027-exon-sc0002273-1575043694:32010..32097Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:32329..32361TCONS_00040027-exon-sc0002273-1491911889:32329..32361Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:32329..32361TCONS_00040027-exon-sc0002273-1510915933:32329..32361Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:32329..32361TCONS_00040027-exon-sc0002273-1575043694:32329..32361Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:32553..32609TCONS_00040027-exon-sc0002273-1491911889:32553..32609Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:32553..32609TCONS_00040027-exon-sc0002273-1510915933:32553..32609Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:32553..32609TCONS_00040027-exon-sc0002273-1575043694:32553..32609Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1491911889:32915..33433TCONS_00040027-exon-sc0002273-1491911889:32915..33433Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1510915933:32915..33433TCONS_00040027-exon-sc0002273-1510915933:32915..33433Clytia hemisphaericaexon
TCONS_00040027-exon-sc0002273-1575043694:32915..33433TCONS_00040027-exon-sc0002273-1575043694:32915..33433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002273supercontigsc0002273:24550..33433 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0997153	0.0979762	0.0668304	0.165041	0.277477	0.103982	0.264401	0.248426	2.15302	1.70046	1.91255	0.776588	5.51407	7.56251	4.42128	3.99534	5.38023	5.76719	11.2324	7.89595	11.0702	11.0733	10.4636	11.8976	17.5828	11.1064	2.33492	4.03928	49.5655	46.2963
Blast
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BLAST of TCONS_00040027 vs. Swiss-Prot (Human)
Match: ASAH1 (Acid ceramidase OS=Homo sapiens GN=ASAH1 PE=1 SV=5)

HSP 1 Score: 350.132 bits (897), Expect = 8.386e-114
Identity = 158/367 (43.05%), Postives = 242/367 (65.94%), Query Frame = 2 
Query:  389 EPCRKDAYPTHEKTRK--IQRFALNLDLPGDQRWAEIVQPHTQQIKNVIQVIKDL----VPR-KVIEIINEIFPILMVRIPQPYADEIQGISRATGIPLGEIILYNIFYEINPFCTSIVGQDESGKLFHGRNLDFGLMMGWDNANNTWILTERLRDAMIIVDFQRDGKTIYSGAHFVGYIGMLTAVKKNAFTMTINARFGLEDKYMGILQWLDGQSNGQMVAFLSRQTFENATNYDSAMETFSNAELVAPIYFIIGGTKKNEGAVITRSRTKPDDVMTLE-RNNSWYLLQTNYDNWKKPLFVDDRRTPGNKCMKELTQKGMNFKGLFNVLSTKPNYNKMTTYTALMQVDEGTLDVYLRDCPDPCYPW 1465
            E CRK  YP    T +  +  + +NLDLP  +RW E++      +K ++  +K++    VP  K++++++E  P L+   P P+ +E++GI+  T IPLGEII +NIFYE+   CTSIV +D+ G L HGRN+DFG+ +GW+  N+TW++TE+L+   + +DFQR+ KT++  + F GY+GMLT  K   F++T+N RF +   Y+GIL+W+ G+ +   + FL+R   EN+T+Y+ A    +  +++AP YFI+GG +  EG VITR R +  DV  L+ +   WY++QTNYD WK P F+DDRRTP   C+   +Q+ ++F+ +++VLSTKP  NK+T YT L+ V +G  + YLRDCPDPC  W
Sbjct:   29 EDCRKSTYPPSGPTYRGAVPWYTINLDLPPYKRWHELMLDKAPVLKVIVNSLKNMINTFVPSGKIMQVVDEKLPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRNMDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFSLTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKILAPAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRRTPAKMCLNRTSQENISFETMYDVLSTKPVLNKLTVYTTLIDVTKGQFETYLRDCPDPCIGW 395
The following BLAST results are available for this feature:
BLAST of TCONS_00040027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASAH18.386e-11443.05Acid ceramidase OS=Homo sapiens GN=ASAH1 PE=1 SV=5[more]
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