TCONS_00040012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040012
Unique NameTCONS_00040012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040012 ID=TCONS_00040012|Name=TCONS_00040012|organism=Clytia hemisphaerica|type=transcript|length=1050bp
GTAATAAAGAACTTGCTGGTCTTTTAAGTATCATTTGCTCAATATTTACA
GGATTTTGGACCAAAAGCGAATTTTAAAAAACGAAAAGTCAAGCTGGGAT
CATTCAACGGATTCCCGTCTTATACTGAAAAACTGATTGGAAAGTTACCT
ACAAATGAACGATTAAATGAATTTACACCAGTCGAACTTTGTAACTTAGA
ATATACACCAGAGAGAGGCTCCTCTATAGACCCTCATATAGATGATGTTT
GGTTATGGGGCGACCAATTGGTAACTCTAAACCTTTTGGATACTACTATA
TTAACTTTGAGTAAAGCACCAACCCCAAATAGTGGATTGGAAAAAGTAAC
ATCATCGAACCATGGATTGAATACAGTGCAAACGTCGAATTGTGTTTTAG
AGGAAGTGCAAATTCCGCTTGTGAGGCGTTCGCTGTTTGTATTAGATGGA
GAAGCACGTTATAAATGGATGCACTCGATTAAAAGAGACGATATAAATGA
CAGGCGTCTTGCAATGACGTTCAGAAACTTAAGTCTTGAGATATTAAGGG
ATCTCAAAAGTAAAGACATTGTTATGCAGATTCAAGAGATATCGAAAAGT
TTTGAAGGTACAGTTGCACTATGATATTGCATTTCTTTCTATTTCTtcta
tttatttaaaaatgatttatatattcaattttttgtaacCTAAAATGTCT
TTAATTAATCAGCACTCTTGAGAAAAATGGTCCCGAGAAGACAAAAGTTG
TCCTTAAAGACCAAAATTGGGTGGTTTGTGTCTAAATCTACCTTAAAATT
CTCGAAAACCCTTTTAGTATTCGTATATGTCTAAGGTTTCAGTACCAACC
CTCCTCCTGTGGGAAAGGGGAATCATTTAAGTATGAaagtatgaattccg
aaaaagggggataaaaactttataataccgaaatttcgaagggaaaattc
atggatttccgataccgaaacaatttcagaattccgaaataccgaaggaa
ttttgcccgatttccgaaattccgaagaaaaaagggtcgatttccgcaat
Run BLAST on NCBI

transcript from alignment at sc0002266:12977..14026

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040012 ID=TCONS_00040012|Name=TCONS_00040012|organism=Clytia hemisphaerica|type=transcript|length=1050bp|location=Sequence derived from alignment at sc0002266:12977..14026 (Clytia hemisphaerica)
attgcggaaatcgacccttttttcttcggaatttcggaaatcgggcaaaa
ttccttcggtatttcggaattctgaaattgtttcggtatcggaaatccat
gaattttcccttcgaaatttcggtattataaagtttttatcccccttttt
cggaattcatacttTCATACTTAAATGATTCCCCTTTCCCACAGGAGGAG
GGTTGGTACTGAAACCTTAGACATATACGAATACTAAAAGGGTTTTCGAG
AATTTTAAGGTAGATTTAGACACAAACCACCCAATTTTGGTCTTTAAGGA
CAACTTTTGTCTTCTCGGGACCATTTTTCTCAAGAGTGCTGATTAATTAA
AGACATTTTAGgttacaaaaaattgaatatataaatcatttttaaataaa
tagaAGAAATAGAAAGAAATGCAATATCATAGTGCAACTGTACCTTCAAA
ACTTTTCGATATCTCTTGAATCTGCATAACAATGTCTTTACTTTTGAGAT
CCCTTAATATCTCAAGACTTAAGTTTCTGAACGTCATTGCAAGACGCCTG
TCATTTATATCGTCTCTTTTAATCGAGTGCATCCATTTATAACGTGCTTC
TCCATCTAATACAAACAGCGAACGCCTCACAAGCGGAATTTGCACTTCCT
CTAAAACACAATTCGACGTTTGCACTGTATTCAATCCATGGTTCGATGAT
GTTACTTTTTCCAATCCACTATTTGGGGTTGGTGCTTTACTCAAAGTTAA
TATAGTAGTATCCAAAAGGTTTAGAGTTACCAATTGGTCGCCCCATAACC
AAACATCATCTATATGAGGGTCTATAGAGGAGCCTCTCTCTGGTGTATAT
TCTAAGTTACAAAGTTCGACTGGTGTAAATTCATTTAATCGTTCATTTGT
AGGTAACTTTCCAATCAGTTTTTCAGTATAAGACGGGAATCCGTTGAATG
ATCCCAGCTTGACTTTTCGTTTTTTAAAATTCGCTTTTGGTCCAAAATCC
TGTAAATATTGAGCAAATGATACTTAAAAGACCAGCAAGTTCTTTATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024235XLOC_024235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040012-exon-sc0002266-1491911889:12977..14026TCONS_00040012-exon-sc0002266-1491911889:12977..14026Clytia hemisphaericaexon
TCONS_00040012-exon-sc0002266-1510915933:12977..14026TCONS_00040012-exon-sc0002266-1510915933:12977..14026Clytia hemisphaericaexon
TCONS_00040012-exon-sc0002266-1575043694:12977..14026TCONS_00040012-exon-sc0002266-1575043694:12977..14026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002266supercontigsc0002266:12977..14026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.64	21.8011	6.91816	4.9777	3.73861	3.49471	4.54936	4.21643	4.07311	3.58947	4.82874	3.22228	4.01092	3.31287	3.43853	4.07077	5.59324	5.08957	3.07171	3.361	4.19122	4.8075	42.5029	35.0878	5.20862	5.7804	7.62179	9.94977	18.7462	23.3075
Blast
[Close]
BLAST of TCONS_00040012 vs. Swiss-Prot (Human)
Match: ALKB4 (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Homo sapiens GN=ALKBH4 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.512e-38
Identity = 82/195 (42.05%), Postives = 122/195 (62.56%), Query Frame = 1 
Query:   49 QDFGPKANFKKRKVKLGSFNGFPSYTEKLIGKLPTNERLNEFTPVELCNLEYTPERGSSIDPHIDDVWLWGDQXXXXXXXXXXXXXXSK-AP-------TPNSGLEKVTSSNHGLNTVQTSNCVLEEVQIPLVRRSLFVLDGEARYKWMHSIKRDDINDRRLAMTFRNLSLEILRDLKSKDIVMQIQEISKSFEG 609
            QD+GPK NF+K+K+K   F G PS++ +++ ++     L  F PVE CNL+Y PERGS+IDPH+DD WLWG++LV+LNLL  T+L++ + AP        P++  E +  S   +   ++  C   EV IPL  RSL VL G AR++W H+I R  I  RR+ +TFR LS E     + +++  ++  I+ SF+G
Sbjct:  107 QDYGPKVNFRKQKLKTEGFCGLPSFSREVVRRMGLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERLVSLNLLSPTVLSMCREAPGSLLLCSAPSAAPEALVDSV--IAPSRSVLCQEVEVAIPLPARSLLVLTGAARHQWKHAIHRRHIEARRVCVTFRELSAEFGPGGRQQELGQELLRIALSFQG 299
The following BLAST results are available for this feature:
BLAST of TCONS_00040012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALKB41.512e-3842.05Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
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