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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040000 ID=TCONS_00040000|Name=TCONS_00040000|organism=Clytia hemisphaerica|type=transcript|length=1301bp
tttatcctctGTAAAGTTACGAAAactataaaaatttaaaagatttcaaa
aggcCTTAAAATTTATACTTGAATTTGACTGAAAGTTTgtttatctcatt
taaaaaaatatttattgcttGGGCCGGGGACAAGTTTCTCACCAGTTATA
CTATTGGGTTAAAGTTATAAAGTAGAACTCAGTACGACACTGATGTTAAT
GTAATAATCTGTAACCTTGTTGCCCATTtagtttcaaatttcaataaatg
GAAAATCAAAGCAGTGACGAAGTCATATTGGTTTCCACAGATTCTGAAAA
TAGCAATGATGCCTTGGAAAGGAATGAACAACCAAAAAGatacgTAAACT
TGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGACTCTGATGATAGC
ATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCCAATTGATGACAC
AACTGAACTAATCAATGACAGGAAATTGAGCAGTATAAAGAATATACCAT
CTGAGCACTTAATGTATGTCAAAGCCACTGAATACAATAGCAAAGGAGTC
CTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAATGATACCGTTGT
TCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACTTGGTGTCAACAT
CCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATCGTCGACCTTGAT
AAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCTTGGTAGCTGGAA
GCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACCGCACCAAATCAG
GACATGTTTCCAGAATATCCTTGTATGATAATGATGCAGATGATCCAAGC
ACTGACATGGTAATCGTTACTCGACGTTCCTATATTAATAAATCAGATGG
AACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACAACCAAATTCATA
ATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAGCACGAAGTAAAA
GTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATTTTTGCGCACTTA
CACGAGCACTCGCAGGAAGATactaaaatcagtaaaatcaataCCCAATC
CATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAGGAAGTTGGTGCA
CTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTATGAGAAATCCAA
AGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCACCAATGCTATGA
GAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACTTATCAACTCGAC
G Run BLAST on NCBI protein sequence of TCONS_00040000-protein >TCONS_00040000-protein ID=TCONS_00040000-protein|Name=TCONS_00040000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MENQSSDEVILVSTDSENSNDALERNEQPKRYVNLEVDLPSFFGTYDSDD
SMQSDFLDYAMSLPIDDTTELINDRKLSSIKNIPSEHLMYVKATEYNSKG
VLLIDPKKLTCVENDTVVPILMNTPFVFNHLVSTSVPRNVKNNGAFIVDL
DKLEDPADVLCDDLGSWKQSKTATKKYQVHRTKSGHVSRISLYDNDADDP
STDMVIVTRRSYINKSDGTLKRAFVSLSMNNQIHNLVFLSYKFNGPEHEV
KVQKHGNSKAPIPFLRTYTSTRRKILKSVKSIPNPSRAHYDVVSSMEEVG
ALGQLPRNVRQVKYEKSKEKTKTVDPLYQITNAMRNVESNTDRFIRTYQL
D Run BLAST on NCBI transcript from alignment at sc0002265:23869..26173+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040000 ID=TCONS_00040000|Name=TCONS_00040000|organism=Clytia hemisphaerica|type=transcript|length=2305bp|location=Sequence derived from alignment at sc0002265:23869..26173+ (Clytia hemisphaerica)
tttatcctctGTAAAGTTACGAAAactataaaaatttaaaagatttcaaa
aggcCTTAAAATTTATACTTGAATTTGACTGAAAGTTTgtttatctcatt
taaaaaaatatttattgcttGGGCCGGGGACAAGTTTCTCACCAGTTATA
CTATTGGGTTAAAGTTATAAAGTAGAACTCAGTACGACACTGATGTTAAT
GTAATAATCTGTAACCTTGTTGCCCATTtagtttcaaatttcaataaatg
GAAAATCAAAGCAGTGACGAAGTCATATTGGTTTCCACAGATTCTGAAAA
TAGCAATGATGCCTTGGAAAGGAATGAACAACCAAAAAGGTAAATTGAAG
TGAAACAACTTTACTTTTCAAGTAACAGGTGAAAAAACTTAAATGGTGAC
TGAAATAATTGAACAGCTAATTTTATTTATCCAGTGAAAAGATATAacaa
ggaatttttttttgaacaaTAGGGTAAAAAGGTTGCTTGTTAATTCTTAT
TTCAATGTTGTTGTCCCACTGTATAAGAAAGTGCAGATCAAGGATCTGGA
AGTAGAACATTATCCAGATATATCATTTCTtacttatttttttcagatac
gTAAACTTGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGACTCTGA
TGATAGGTAAATTCCCCtctaatttttaatattttttttcctttattaGC
TTGGGTATGACAAGGCTTTCTACGCCTGGATTCAGGGGGGTTGATTTTTG
AGCAAAGAACTGGGTACTTGGGTAAGAGTAATCTTGTTCCTTTTGTTGAA
AGCTCCTTAAAAAGTTCCACCCCTCATAGATTTAGAGGCTTTTTAGAATT
CACAAAATTGCCTATTGGGTTTCAACTTTGGGGGTTGCTTGGATTATTTC
TATTCAAAAGCTCTTAGAATCATTATTTAAGTTTAgggttttaaatttta
atttattcatctcaaaaggaattttacaaaaataactaataaataaaaaa
tacatcaCCAAATGTTAAATAGGTCAATGTTAGGAAAAGGTTTAAGCTTT
CTTATTGTGTTAGAGCTTGTAATCATAGTCTTGAAAGGTTATCAATTTAT
ATTATAGCATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCCAATT
GATGACACAACTGAACTAATCAATGACAGGAAATTgtaagtaattttttt
attgatctGTAATTTTCAACCTCAGATGGTTCGAAGTAGTGTTCCCACAA
AATCCCCAAAACATGTGTCCGGGGGAGGGGAGGGGCttggaaattttaga
ttttctggAAGGGCTAAGATAAAAGGGTTGAGGTAATTTTTTTGGAGGGG
ACTAAGACCCCTAAGGACACTATGAGGAACTACAAGACCagttataaaaa
ataaagacaTTAGAGAAATTTATGGTATTCATTAAATACTTTAAAATGGA
AAGTTATCACTATGCCTTTGATCATTTTTAGGAGCAGTATAAAGAATATA
CCATCTGAGCACTTAATGTATGTCAAAGCCACTGAATACAATAGCAAAGG
AGTCCTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAATGATACCG
TTGTTCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACTTGGTGTCA
ACATCCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATCGTCGACCT
TGATAAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCTTGGTAGCT
GGAAGCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACCGCACCAAA
TCAGGACATGTTTCCAGAATATCCTTGTATGATAATGATGCAGATGATCC
AAGCACTGACATGGTAATCGTTACTCGACGTTCCTATATTAATAAATCAG
ATGGAACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACAACCAAATT
CATAATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAGCACGAAGT
AAAAGTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATTTTTGCGCA
CTTACACGAGCACTCGCAGGAAGATactaaaatcagtaaaatcaataCCC
AATCCATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAGGAAGTTGG
TGCACTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTATGAGAAAT
CCAAAGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCACCAATGCT
ATGAGAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACTTATCAACT
CGACG Coding sequence (CDS) from alignment at sc0002265:23869..26173+ >TCONS_00040000 ID=TCONS_00040000|Name=TCONS_00040000|organism=Clytia hemisphaerica|type=CDS|length=4212bp|location=Sequence derived from alignment at sc0002265:23869..26173+ (Clytia hemisphaerica)
atgGAAAATCAAAGCAGTGACGAAGTCATATTGGTTTCCACAGATTCTGA
AAATAGCAATGATGCCTTGGAAAGGAATGAACAACCAAAAAGatacgTAA
ACTTGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGACTCTGATGAT
AGCATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCCAATTGATGA
CACAACTGAACTAATCAATGACAGGAAATTGAGCAGTATAAAGAATATAC
CATCTGAGCACTTAATGTATGTCAAAGCCACTGAATACAATAGCAAAGGA
GTCCTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAATGATACCGT
TGTTCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACTTGGTGTCAA
CATCCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATCGTCGACCTT
GATAAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCTTGGTAGCTG
GAAGCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACCGCACCAAAT
CAGGACATGTTTCCAGAATATCCTTGTATGATAATGATGCAGATGATCCA
AGCACTGACATGGTAATCGTTACTCGACGTTCCTATATTAATAAATCAGA
TGGAACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACAACCAAATTC
ATAATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAGCACGAAGTA
AAAGTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATTTTTGCGCAC
TTACACGAGCACTCGCAGGAAGATactaaaatcagtaaaatcaataCCCA
ATCCATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAGGAAGTTGGT
GCACTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTATGAGAAATC
CAAAGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCACCAATGCTA
TGAGAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACTTATCAACTC
GACatgGAAAATCAAAGCAGTGACGAAGTCATATTGGTTTCCACAGATTC
TGAAAATAGCAATGATGCCTTGGAAAGGAATGAACAACCAAAAAGatacg
TAAACTTGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGACTCTGAT
GATAGCATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCCAATTGA
TGACACAACTGAACTAATCAATGACAGGAAATTGAGCAGTATAAAGAATA
TACCATCTGAGCACTTAATGTATGTCAAAGCCACTGAATACAATAGCAAA
GGAGTCCTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAATGATAC
CGTTGTTCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACTTGGTGT
CAACATCCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATCGTCGAC
CTTGATAAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCTTGGTAG
CTGGAAGCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACCGCACCA
AATCAGGACATGTTTCCAGAATATCCTTGTATGATAATGATGCAGATGAT
CCAAGCACTGACATGGTAATCGTTACTCGACGTTCCTATATTAATAAATC
AGATGGAACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACAACCAAA
TTCATAATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAGCACGAA
GTAAAAGTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATTTTTGCG
CACTTACACGAGCACTCGCAGGAAGATactaaaatcagtaaaatcaataC
CCAATCCATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAGGAAGTT
GGTGCACTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTATGAGAA
ATCCAAAGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCACCAATG
CTATGAGAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACTTATCAA
CTCGACatgGAAAATCAAAGCAGTGACGAAGTCATATTGGTTTCCACAGA
TTCTGAAAATAGCAATGATGCCTTGGAAAGGAATGAACAACCAAAAAGat
acgTAAACTTGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGACTCT
GATGATAGCATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCCAAT
TGATGACACAACTGAACTAATCAATGACAGGAAATTGAGCAGTATAAAGA
ATATACCATCTGAGCACTTAATGTATGTCAAAGCCACTGAATACAATAGC
AAAGGAGTCCTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAATGA
TACCGTTGTTCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACTTGG
TGTCAACATCCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATCGTC
GACCTTGATAAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCTTGG
TAGCTGGAAGCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACCGCA
CCAAATCAGGACATGTTTCCAGAATATCCTTGTATGATAATGATGCAGAT
GATCCAAGCACTGACATGGTAATCGTTACTCGACGTTCCTATATTAATAA
ATCAGATGGAACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACAACC
AAATTCATAATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAGCAC
GAAGTAAAAGTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATTTTT
GCGCACTTACACGAGCACTCGCAGGAAGATactaaaatcagtaaaatcaa
taCCCAATCCATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAGGAA
GTTGGTGCACTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTATGA
GAAATCCAAAGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCACCA
ATGCTATGAGAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACTTAT
CAACTCGACatgGAAAATCAAAGCAGTGACGAAGTCATATTGGTTTCCAC
AGATTCTGAAAATAGCAATGATGCCTTGGAAAGGAATGAACAACCAAAAA
GatacgTAAACTTGGAAGTTGATTTGCCTAGTTTCTTTGGAACATATGAC
TCTGATGATAGCATGCAATCAGATTTTCTGGACTATGCAATGTCGTTGCC
AATTGATGACACAACTGAACTAATCAATGACAGGAAATTGAGCAGTATAA
AGAATATACCATCTGAGCACTTAATGTATGTCAAAGCCACTGAATACAAT
AGCAAAGGAGTCCTTCTTATTGACCCCAAGAAATTGACTTGTGTTGAAAA
TGATACCGTTGTTCCGATCTTGATGAATACCCCTTTTGTGTTCAATCACT
TGGTGTCAACATCCGTTCCaagaaatgttaaaaacaatgGTGCTTTCATC
GTCGACCTTGATAAACTCGAAGATCCTGCTGATGTCCTCTGTGATGACCT
TGGTAGCTGGAAGCAATCTAAAACCGCTACAAAGAAATACCAAGTCCACC
GCACCAAATCAGGACATGTTTCCAGAATATCCTTGTATGATAATGATGCA
GATGATCCAAGCACTGACATGGTAATCGTTACTCGACGTTCCTATATTAA
TAAATCAGATGGAACATTAAAGAGAGCATTTGTGTCACTTTCAATGAACA
ACCAAATTCATAATCTTGTTTTTCTGTCTTACAAATTCAATGGTCCTGAG
CACGAAGTAAAAGTTCAAAAGCATGGAAATTCAAAAGCCCCAATACCATT
TTTGCGCACTTACACGAGCACTCGCAGGAAGATactaaaatcagtaaaat
caataCCCAATCCATCACGTGCCCACTATGATGTTGTTAGTTCGATGGAG
GAAGTTGGTGCACTTGGTCAATTACCGCGTAATGTTCGCCAAGTTAAGTA
TGAGAAATCCAAAGAGAAAACTAAGACTGTTGATCCATTGTATCAAATCA
CCAATGCTATGAGAAACGTTGAAAGCAACACAGATCGGTTCATCAGAACT
TATCAACTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040000-exon-sc0002265-1491911889:23869..24207 | TCONS_00040000-exon-sc0002265-1491911889:23869..24207 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1510915933:23869..24207 | TCONS_00040000-exon-sc0002265-1510915933:23869..24207 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1575043694:23869..24207 | TCONS_00040000-exon-sc0002265-1575043694:23869..24207 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1491911889:24465..24524 | TCONS_00040000-exon-sc0002265-1491911889:24465..24524 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1510915933:24465..24524 | TCONS_00040000-exon-sc0002265-1510915933:24465..24524 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1575043694:24465..24524 | TCONS_00040000-exon-sc0002265-1575043694:24465..24524 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1491911889:24976..25053 | TCONS_00040000-exon-sc0002265-1491911889:24976..25053 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1510915933:24976..25053 | TCONS_00040000-exon-sc0002265-1510915933:24976..25053 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1575043694:24976..25053 | TCONS_00040000-exon-sc0002265-1575043694:24976..25053 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1491911889:25350..26173 | TCONS_00040000-exon-sc0002265-1491911889:25350..26173 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1510915933:25350..26173 | TCONS_00040000-exon-sc0002265-1510915933:25350..26173 | Clytia hemisphaerica | exon |
| TCONS_00040000-exon-sc0002265-1575043694:25350..26173 | TCONS_00040000-exon-sc0002265-1575043694:25350..26173 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002265 | supercontig | sc0002265:23869..26173 + |
Blast
The following BLAST results are available for this feature:
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