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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039990 ID=TCONS_00039990|Name=TCONS_00039990|organism=Clytia hemisphaerica|type=transcript|length=2192bp
CTAGTAATAAGCGATTTATAGACGTAAAATCTTGTTCATGGTCAAATGTA
AGATTTCATGTATTTTTCTAGCTGACAAGAacgctgagaatatagcctgc
aagccacttaacccctcccaaatcgaaaaatccaatgaagcaaagtggaa
gtactgaaactacaattctcgcccgaattaTCCTTATATTTTGATGTCAC
ACAAAGtaaactcgggttttccgggccacGTATTATGACGGGGaagaaat
caaaaacatttttgaggtTCGCAATTACGACTGCAACTGCATTTCGTTGG
AGATATTCTAGTTCGTTCTGTTTCTTTGGAAAAGAAAGGCAAAAATCATT
TGGGACGCTATTTCGTATTAATTTGTTCCGCGACatatttttactttcaa
tctaatAGTAGAACGGGAATGAAGACGAGACCGTTGAAATTCGGGGTATT
ATacacaatttttctttcaaaacgaATGACTTAGTCCTCACTCTCGACAT
TCTCTGTATGAAGtcctaaaaagaaaagaaggaaTAAAATGATTTCAATC
AAATTCTATgctaaattaatttttcaaactaattttcttAGCAAGTTTAA
TATACACCATAATGCGTCTAATACAGGAGAAGTATGTGTTGTATGATGAT
TACTATTATTGTTACGGGAGTCTGTATACTTTCGGGTACCTAATATCCGA
AAGGGGGGctgctaaaattttccacccaggacattcttattctaaCCCCC
CCActccgcttattgatttttgggaaatttttttttgaaagttccctctt
ttgccctaattcttctgtattagcctccttttcgaaaatccccccccagg
acatttttattccacctccccccgtttattacaACCCTCCCGGATATTAG
GTACCAGAGAGTAAACGACTGGAAGACCCCGGTGTACCGGCCTTATAGAA
ACCCCGGCTAgttacgcagaaacttgcgtagcgagaaaacaatcaagcaa
caacaaactctcattacaaaatcaactcaaatgaaaaacttttaacacac
aaatcaacacacattttttgttcaagaattttttttgatcgggaaaaaat
tataattgcaatattgactcttttcttttgtttggagttagcgcacaaag
gtttctaggcGACTAAAATTGATtccttcattactttttgctttatttct
actatgtctgaattagtcgccTAGCTTGCTAGACAAGCTAGACTGTACTA
atatactaaagtctgtctcaatataatttgcagcggagacaaaaaagttt
tcacttttgatagaattcgaaatactttaggcgtataaACTTTcgtgagc
agaaactttcgcgattttcgcgaattttggtcCTTTCCGCGAAAGTAAAA
GTCTTCGAAAATTCTTAACagtactctaggggctgagttaggtctctATG
CGCATCgccgtatagtcattttttcttttgatcaagaAAATAGAGCATAA
GAAGGAATTATCAAGATTTTTAGTAATGCTCAGTTGTTTCAATAGTTTTA
TTACAACATTGAATTATAGTACTACAAACTACAACCTTTTCTTGCTGCCA
AAAATGCCCAGAAATGAGGGACATCTTCATAAAAACTTGGTTaatatttg
gattttttaaGACTTGACCGACAACCGACATTGTGTtactattgttattt
tttatcaaaccattGTAGTTTTAACTTATCTTGTTGtgtttattaggcaa
aaacttgtttgaaaagaaagttatttTATTTGTTCTGTTATAAACATCCC
TAGAAACGTTTGGGtaggggccattcaaaaagtacgttcgtccaaatttc
cctattttcagACCCCCCTCCCCTTGTTCGTCAGCGTCCGTTTTGAAGTA
GCGTTCGTTTTGAAGTACACCCCTTTGTACGTTCGTTTTTATCTCAAAAA
TTTTACCCCCCCCCCGATTTTTCGATTTCGCCCAAATTCTTACAACAATC
ACAAatacataaaaaaattgataattggAGAATTTAGACAAGACAAGTTC
AAAGAATATGATTTTAGCGTTATTCTTTAATCTTATCGCACCACCTTTTT
GCTCTCTAATTATCTAATAATTGCTAAACAATTACAACATACACAATTGT
TTAGGGGATTAACAATTATCTTCAGTTAtcgattcaaagaaa Run BLAST on NCBI transcript from alignment at sc0002261:566..3833+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039990 ID=TCONS_00039990|Name=TCONS_00039990|organism=Clytia hemisphaerica|type=transcript|length=3268bp|location=Sequence derived from alignment at sc0002261:566..3833+ (Clytia hemisphaerica)
CTAGTAATAAGCGATTTATAGACGTAAAATCTTGTTCATtagtaggggcc
actatgtcgcgaaaaagcttcccgtgtgcagcagcttgtgcaaagggatt
ttatgattgaatattgttccttgaatctagaagatcaaaatttgagaggt
ggggccgggtgtgaccacccgttgccatggaaactgacgtcattggttac
tatggcaaccaaaataaaaagtcgtcaaaattgaaaaatttttgtttcag
tcgaaagagcatgaaaaactgataaagaaaaaggtcacaacctatatctg
aaaatgaatatatcaggagatattaaagaaataaggtaaaatgacgtcat
cgaaaaataaaaatttgccaaaattcaaaaccttttggttttttggaaag
agtaccttccagtgaacaaaaaatattattacgaaaaagtctgaaaatcc
tttttaagaagtctatgagccaaaattgatatttttaaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTT
CGAcaggcaaaaaatgaaattgtcaattttggccaatagactttttttaa
cgaattttcaaacgttttcgtaataatattttatgttccctGGAGcgtct
tttttccaaaaaaccaaaaattttcgaattttggcaaatttttatttttc
gacgacgtcatcgttttatgacgtctttttgtcttatttctttaatatct
cctgatatattcattttcagatataggttgtgacctttttctttatcagt
ttttcatgttctttcgactgaaacaaaaaattttcaattttgacctttta
ttttggttgccatagtaaccaatgacgtcagtttccatggcaacgggtag
tcacacccggccccacctctcaaattttgatcttctacattggaacaata
ttcaatcataaaatccctttgcacaagctgctgcacacgggaagacatag
tggcctctactacATGGTCAAATGTAAGATTTCATGTATTTTTCTAGCTG
ACAAGAacgctgagaatatagcctgcaagccacttaacccctcccaaatc
gaaaaatccaatgaagcaaagtggaagtactgaaactacaattctcgccc
gaattaTCCTTATATTTTGATGTCACACAAAGtaaactcgggttttccgg
gccacGTATTATGACGGGGaagaaatcaaaaacatttttgaggtTCGCAA
TTACGACTGCAACTGCATTTCGTTGGAGATATTCTAGTTCGTTCTGTTTC
TTTGGAAAAGAAAGGCAAAAATCATTTGGGACGCTATTTCGTATTAATTT
GTTCCGCGACatatttttactttcaatctaatAGTAGAACGGGAATGAAG
ACGAGACCGTTGAAATTCGGGGTATTATacacaatttttctttcaaaacg
aATGACTTAGTCCTCACTCTCGACATTCTCTGTATGAAGtcctaaaaaga
aaagaaggaaTAAAATGATTTCAATCAAATTCTATgctaaattaattttt
caaactaattttcttAGCAAGTTTAATATACACCATAATGCGTCTAATAC
AGGAGAAGTATGTGTTGTATGATGATTACTATTATTGTTACGGGAGTCTG
TATACTTTCGGGTACCTAATATCCGAAAGGGGGGctgctaaaattttcca
cccaggacattcttattctaaCCCCCCCActccgcttattgatttttggg
aaatttttttttgaaagttccctcttttgccctaattcttctgtattagc
ctccttttcgaaaatccccccccaggacatttttattccacctccccccg
tttattacaACCCTCCCGGATATTAGGTACCAGAGAGTAAACGACTGGAA
GACCCCGGTGTACCGGCCTTATAGAAACCCCGGCTAgttacgcagaaact
tgcgtagcgagaaaacaatcaagcaacaacaaactctcattacaaaatca
actcaaatgaaaaacttttaacacacaaatcaacacacattttttgttca
agaattttttttgatcgggaaaaaattataattgcaatattgactctttt
cttttgtttggagttagcgcacaaaggtttctaggcGACTAAAATTGATt
ccttcattactttttgctttatttctactatgtctgaattagtcgccTAG
CTTGCTAGACAAGCTAGACTGTACTAatatactaaagtctgtctcaatat
aatttgcagcggagacaaaaaagttttcacttttgatagaattcgaaata
ctttaggcgtataaACTTTcgtgagcagaaactttcgcgattttcgcgaa
ttttggtcCTTTCCGCGAAAGTAAAAGTCTTCGAAAATTCTTAACagtac
tctaggggctgagttaggtctctATGCGCATCgccgtatagtcatttttt
cttttgatcaagaAAATAGAGCATAAGAAGGAATTATCAAGATTTTTAGT
AATGCTCAGTTGTTTCAATAGTTTTATTACAACATTGAATTATAGTACTA
CAAACTACAACCTTTTCTTGCTGCCAAAAATGCCCAGAAATGAGGGACAT
CTTCATAAAAACTTGGTTaatatttggattttttaaGACTTGACCGACAA
CCGACATTGTGTtactattgttattttttatcaaaccattGTAGTTTTAA
CTTATCTTGTTGtgtttattaggcaaaaacttgtttgaaaagaaagttat
ttTATTTGTTCTGTTATAAACATCCCTAGAAACGTTTGGGtaggggccat
tcaaaaagtacgttcgtccaaatttccctattttcagACCCCCCTCCCCT
TGTTCGTCAGCGTCCGTTTTGAAGTAGCGTTCGTTTTGAAGTACACCCCT
TTGTACGTTCGTTTTTATCTCAAAAATTTTACCCCCCCCCCGATTTTTCG
ATTTCGCCCAAATTCTTACAACAATCACAAatacataaaaaaattgataa
ttggAGAATTTAGACAAGACAAGTTCAAAGAATATGATTTTAGCGTTATT
CTTTAATCTTATCGCACCACCTTTTTGCTCTCTAATTATCTAATAATTGC
TAAACAATTACAACATACACAATTGTTTAGGGGATTAACAATTATCTTCA
GTTAtcgattcaaagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039990-exon-sc0002261-1491911889:566..602 | TCONS_00039990-exon-sc0002261-1491911889:566..602 | Clytia hemisphaerica | exon |
| TCONS_00039990-exon-sc0002261-1510915933:566..602 | TCONS_00039990-exon-sc0002261-1510915933:566..602 | Clytia hemisphaerica | exon |
| TCONS_00039990-exon-sc0002261-1575043694:566..602 | TCONS_00039990-exon-sc0002261-1575043694:566..602 | Clytia hemisphaerica | exon |
| TCONS_00039990-exon-sc0002261-1491911889:1679..3833 | TCONS_00039990-exon-sc0002261-1491911889:1679..3833 | Clytia hemisphaerica | exon |
| TCONS_00039990-exon-sc0002261-1510915933:1679..3833 | TCONS_00039990-exon-sc0002261-1510915933:1679..3833 | Clytia hemisphaerica | exon |
| TCONS_00039990-exon-sc0002261-1575043694:1679..3833 | TCONS_00039990-exon-sc0002261-1575043694:1679..3833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002261 | supercontig | sc0002261:566..3833 + |
Blast
The following BLAST results are available for this feature:
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