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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039989 ID=TCONS_00039989|Name=TCONS_00039989|organism=Clytia hemisphaerica|type=transcript|length=2626bp
TTAAGTTAACTCGAAATGCATAATGTGACATTCATTTCCGAGTTATCTTG
AAGCATCACAACCAAGTAGTTGCCCAAAATATTACTAGCATGTAGCtctc
gctatgaatgccccgcgaACGCATTATCGAGAATGAACGTTTTCAACTCA
GAAATTTAACCTGTAACTATTGATATGAACAACTCGGAAACTCATTTTGC
GTAACTCGACATTCATTTTGTAGaccgaaaaaaattaatttcccaCCCTG
TGCtgacaaaaagtcagaaatgtgcagtgtcacttgagccttctgggcca
ttgaccctatgcagttctagttcacaaattttataagaactggaagtgcg
tgttttgagccttctgggccaacGTAATTAATTCCTCAACCCGAAATATT
AGCTCTGTAGGGCATTCATAGCCGAGACTACTCCCTAGTAATAAGCGATT
TATAGACGTAAAATCTTGTTCATGGTCAAATGTAAGATTTCATGTATTTT
TCTAGCTGACAAGAacgctgagaatatagcctgcaagccacttaacccct
cccaaatcgaaaaatccaatgaagcaaagtggaagtactgaaactacaat
tctcgcccgaattaTCCTTATATTTTGATGTCACACAAAGtaaactcggg
ttttccgggccacGTATTATGACGGGGaagaaatcaaaaacatttttgag
gtTCGCAATTACGACTGCAACTGCATTTCGTTGGAGATATTCTAGTTCGT
TCTGTTTCTTTGGAAAAGAAAGGCAAAAATCATTTGGGACGCTATTTCGT
ATTAATTTGTTCCGCGACatatttttactttcaatctaatAGTAGAACGG
GAATGAAGACGAGACCGTTGAAATTCGGGGTATTATacacaatttttctt
tcaaaacgaATGACTTAGTCCTCACTCTCGACATTCTCTGTATGAAGtcc
taaaaagaaaagaaggaaTAAAATGATTTCAATCAAATTCTATgctaaat
taatttttcaaactaattttcttAGCAAGTTTAATATACACCATAATGCG
TCTAATACAGGAGAAGTATGTGTTGTATGATGATTACTATTATTGTTACG
GGAGTCTGTATACTTTCGGGTACCTAATATCCGAAAGGGGGGctgctaaa
attttccacccaggacattcttattctaaCCCCCCCActccgcttattga
tttttgggaaatttttttttgaaagttccctcttttgccctaattcttct
gtattagcctccttttcgaaaatccccccccaggacatttttattccacc
tccccccgtttattacaACCCTCCCGGATATTAGGTACCAGAGAGTAAAC
GACTGGAAGACCCCGGTGTACCGGCCTTATAGAAACCCCGGCTAgttacg
cagaaacttgcgtagcgagaaaacaatcaagcaacaacaaactctcatta
caaaatcaactcaaatgaaaaacttttaacacacaaatcaacacacattt
tttgttcaagaattttttttgatcgggaaaaaattataattgcaatattg
actcttttcttttgtttggagttagcgcacaaaggtttctaggcGACTAA
AATTGATtccttcattactttttgctttatttctactatgtctgaattag
tcgccTAGCTTGCTAGACAAGCTAGACTGTACTAatatactaaagtctgt
ctcaatataatttgcagcggagacaaaaaagttttcacttttgatagaat
tcgaaatactttaggcgtataaACTTTcgtgagcagaaactttcgcgatt
ttcgcgaattttggtcCTTTCCGCGAAAGTAAAAGTCTTCGAAAATTCTT
AACagtactctaggggctgagttaggtctctATGCGCATCgccgtatagt
cattttttcttttgatcaagaAAATAGAGCATAAGAAGGAATTATCAAGA
TTTTTAGTAATGCTCAGTTGTTTCAATAGTTTTATTACAACATTGAATTA
TAGTACTACAAACTACAACCTTTTCTTGCTGCCAAAAATGCCCAGAAATG
AGGGACATCTTCATAAAAACTTGGTTaatatttggattttttaaGACTTG
ACCGACAACCGACATTGTGTtactattgttattttttatcaaaccattGT
AGTTTTAACTTATCTTGTTGtgtttattaggcaaaaacttgtttgaaaag
aaagttatttTATTTGTTCTGTTATAAACATCCCTAGAAACGTTTGGGta
ggggccattcaaaaagtacgttcgtccaaatttccctattttcagACCCC
CCTCCCCTTGTTCGTCAGCGTCCGTTTTGAAGTAGCGTTCGTTTTGAAGT
ACACCCCTTTGTACGTTCGTTTTTATCTCAAAAATTTTACCCCCCCCCCG
ATTTTTCGATTTCGCCCAAATTCTTACAACAATCACAAatacataaaaaa
attgataattggAGAATTTAGACAAGACAAGTTCAAAGAATATGATTTTA
GCGTTATTCTTTAATCTTATCGCACCACCTTTTTGCTCTCTAATTATCTA
ATAATTGCTAAACAATTACAACATACACAATTGTTTAGGGGATTAACAAT
TATCTTCAGTTAtcgattcaaagaaa Run BLAST on NCBI transcript from alignment at sc0002261:10..3833+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039989 ID=TCONS_00039989|Name=TCONS_00039989|organism=Clytia hemisphaerica|type=transcript|length=3824bp|location=Sequence derived from alignment at sc0002261:10..3833+ (Clytia hemisphaerica)
TTAAGTTAACTCGAAATGCATAATGTGACATTCATTTCCGAGTTATCTTG
AAGCATCACAACCAAGTAGTTGCCCAAAATATTACTAGCATGTAGCtctc
gctatgaatgccccgcgaACGCATTATCGAGAATGAACGTTTTCAACTCA
GAAATTTAACCTGTAACTATTGATATGAACAACTCGGAAACTCATTTTGC
GTAACTCGACATTCATTTTGTAGaccgaaaaaaattaatttcccaCCCTG
TGCtgacaaaaagtcagaaatgtgcagtgtcacttgagccttctgggcca
ttgaccctatgcagttctagttcacaaattttataagaactggaagtgcg
tgttttgagccttctgggccaacGTAATTAATTCCTCAACCCGAAATATT
AGCTCTGTAGGGCATTCATAGCCGAGACTACTCCCTAGTAATAAGCGATT
TATAGACGTAAAATCTTGTTCATGGTCAAATGTAAGATTTCATNTGTAAT
TAATTCCTCAACCCCAAATATTAGCTCTATAGGGCATTCATAGCCGAGAC
TACTCCCTAGTAATAAGCGATTTATAGACGTAAAATCTTGTTCATtagta
ggggccactatgtcgcgaaaaagcttcccgtgtgcagcagcttgtgcaaa
gggattttatgattgaatattgttccttgaatctagaagatcaaaatttg
agaggtggggccgggtgtgaccacccgttgccatggaaactgacgtcatt
ggttactatggcaaccaaaataaaaagtcgtcaaaattgaaaaatttttg
tttcagtcgaaagagcatgaaaaactgataaagaaaaaggtcacaaccta
tatctgaaaatgaatatatcaggagatattaaagaaataaggtaaaatga
cgtcatcgaaaaataaaaatttgccaaaattcaaaaccttttggtttttt
ggaaagagtaccttccagtgaacaaaaaatattattacgaaaaagtctga
aaatcctttttaagaagtctatgagccaaaattgatatttttaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AACCTTCGAcaggcaaaaaatgaaattgtcaattttggccaatagacttt
ttttaacgaattttcaaacgttttcgtaataatattttatgttccctGGA
Gcgtcttttttccaaaaaaccaaaaattttcgaattttggcaaattttta
tttttcgacgacgtcatcgttttatgacgtctttttgtcttatttcttta
atatctcctgatatattcattttcagatataggttgtgacctttttcttt
atcagtttttcatgttctttcgactgaaacaaaaaattttcaattttgac
cttttattttggttgccatagtaaccaatgacgtcagtttccatggcaac
gggtagtcacacccggccccacctctcaaattttgatcttctacattgga
acaatattcaatcataaaatccctttgcacaagctgctgcacacgggaag
acatagtggcctctactacATGGTCAAATGTAAGATTTCATGTATTTTTC
TAGCTGACAAGAacgctgagaatatagcctgcaagccacttaacccctcc
caaatcgaaaaatccaatgaagcaaagtggaagtactgaaactacaattc
tcgcccgaattaTCCTTATATTTTGATGTCACACAAAGtaaactcgggtt
ttccgggccacGTATTATGACGGGGaagaaatcaaaaacatttttgaggt
TCGCAATTACGACTGCAACTGCATTTCGTTGGAGATATTCTAGTTCGTTC
TGTTTCTTTGGAAAAGAAAGGCAAAAATCATTTGGGACGCTATTTCGTAT
TAATTTGTTCCGCGACatatttttactttcaatctaatAGTAGAACGGGA
ATGAAGACGAGACCGTTGAAATTCGGGGTATTATacacaatttttctttc
aaaacgaATGACTTAGTCCTCACTCTCGACATTCTCTGTATGAAGtccta
aaaagaaaagaaggaaTAAAATGATTTCAATCAAATTCTATgctaaatta
atttttcaaactaattttcttAGCAAGTTTAATATACACCATAATGCGTC
TAATACAGGAGAAGTATGTGTTGTATGATGATTACTATTATTGTTACGGG
AGTCTGTATACTTTCGGGTACCTAATATCCGAAAGGGGGGctgctaaaat
tttccacccaggacattcttattctaaCCCCCCCActccgcttattgatt
tttgggaaatttttttttgaaagttccctcttttgccctaattcttctgt
attagcctccttttcgaaaatccccccccaggacatttttattccacctc
cccccgtttattacaACCCTCCCGGATATTAGGTACCAGAGAGTAAACGA
CTGGAAGACCCCGGTGTACCGGCCTTATAGAAACCCCGGCTAgttacgca
gaaacttgcgtagcgagaaaacaatcaagcaacaacaaactctcattaca
aaatcaactcaaatgaaaaacttttaacacacaaatcaacacacattttt
tgttcaagaattttttttgatcgggaaaaaattataattgcaatattgac
tcttttcttttgtttggagttagcgcacaaaggtttctaggcGACTAAAA
TTGATtccttcattactttttgctttatttctactatgtctgaattagtc
gccTAGCTTGCTAGACAAGCTAGACTGTACTAatatactaaagtctgtct
caatataatttgcagcggagacaaaaaagttttcacttttgatagaattc
gaaatactttaggcgtataaACTTTcgtgagcagaaactttcgcgatttt
cgcgaattttggtcCTTTCCGCGAAAGTAAAAGTCTTCGAAAATTCTTAA
CagtactctaggggctgagttaggtctctATGCGCATCgccgtatagtca
ttttttcttttgatcaagaAAATAGAGCATAAGAAGGAATTATCAAGATT
TTTAGTAATGCTCAGTTGTTTCAATAGTTTTATTACAACATTGAATTATA
GTACTACAAACTACAACCTTTTCTTGCTGCCAAAAATGCCCAGAAATGAG
GGACATCTTCATAAAAACTTGGTTaatatttggattttttaaGACTTGAC
CGACAACCGACATTGTGTtactattgttattttttatcaaaccattGTAG
TTTTAACTTATCTTGTTGtgtttattaggcaaaaacttgtttgaaaagaa
agttatttTATTTGTTCTGTTATAAACATCCCTAGAAACGTTTGGGtagg
ggccattcaaaaagtacgttcgtccaaatttccctattttcagACCCCCC
TCCCCTTGTTCGTCAGCGTCCGTTTTGAAGTAGCGTTCGTTTTGAAGTAC
ACCCCTTTGTACGTTCGTTTTTATCTCAAAAATTTTACCCCCCCCCCGAT
TTTTCGATTTCGCCCAAATTCTTACAACAATCACAAatacataaaaaaat
tgataattggAGAATTTAGACAAGACAAGTTCAAAGAATATGATTTTAGC
GTTATTCTTTAATCTTATCGCACCACCTTTTTGCTCTCTAATTATCTAAT
AATTGCTAAACAATTACAACATACACAATTGTTTAGGGGATTAACAATTA
TCTTCAGTTAtcgattcaaagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039989-exon-sc0002261-1491911889:10..480 | TCONS_00039989-exon-sc0002261-1491911889:10..480 | Clytia hemisphaerica | exon |
| TCONS_00039989-exon-sc0002261-1510915933:10..480 | TCONS_00039989-exon-sc0002261-1510915933:10..480 | Clytia hemisphaerica | exon |
| TCONS_00039989-exon-sc0002261-1575043694:10..480 | TCONS_00039989-exon-sc0002261-1575043694:10..480 | Clytia hemisphaerica | exon |
| TCONS_00039989-exon-sc0002261-1491911889:1679..3833 | TCONS_00039989-exon-sc0002261-1491911889:1679..3833 | Clytia hemisphaerica | exon |
| TCONS_00039989-exon-sc0002261-1510915933:1679..3833 | TCONS_00039989-exon-sc0002261-1510915933:1679..3833 | Clytia hemisphaerica | exon |
| TCONS_00039989-exon-sc0002261-1575043694:1679..3833 | TCONS_00039989-exon-sc0002261-1575043694:1679..3833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002261 | supercontig | sc0002261:10..3833 + |
Blast
The following BLAST results are available for this feature:
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