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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039961 ID=TCONS_00039961|Name=TCONS_00039961|organism=Clytia hemisphaerica|type=transcript|length=1858bp
tttcagttcttgaaatGAAGACAATGACATGGCAAATATGTACAGGAATA
AAAACtagaataaaataaatgaataCACAGATACGCGTAAAGAAAACACA
TACAAACACATATAGTTATAAAACAGCAAAAGtgacaaaatcacaaaaac
agTAAACAGTAGATAGTACATGTAAACAATATTGAGTATATGGCTTAAAA
TGACAAAAGCAGGAGTAATAGTACTAAAAGGCAGGTATAAATAAACAAGG
ctttaaaataaaacgaaattGCTAAATTAAAAGGAAGCTCCCTAGATGCT
GGGGTGGGTGGAGGAGCAAAAATACAGCAGTCAGcactaagaaatgaaga
actgaaaaagggcCATGTGAAGAAACTGAGGCCTTATATAGACATGAGAG
TGAGGCTGAACCAAGAGTCCGGATAAAACCAAAACAACCAAATGcatcta
aactctgatatacaAACATATATTCTGATATAACTTAAACACAAGTGGTC
GAAAGGGGGACTAGGCAGGAAGGCACACAGTGTGAtctacatggtatttt
cagttcttaAAATGAAGACAATGACATGGCAAATATGTACAGGAATAAAA
ACTAGAATAAAATAAATGTCCAAATCCAATGTGGGTGTTAGTTAGGTAAA
GATGAAATATAGGAAGAAATAGAATGCTGGGCGTGCAAGCGCTGGGACAG
GGGCATATGTAAATAGAGGTACATTGTATCAGACTTCCAATCACCCATGA
CTGCAATGGAGTCAAGAGGTACCCCGGCCTCCAAAGCAAAGGTGGCCCCA
CCACGTCTGAAGGAGTGTGACCCATATTGACGGGGTGAGAGCCCAGAACG
AGAGAGGTGAGCTTGAAGGATGCACATAAAATCCCGGTACACAAAAACCC
GATTCGAGGCAAGGTGGGAATCCCTCCAACAAAAGGCTTGATCGCAAGGA
AGGGNGCTGGGCGTGCAAGCGCTGGGACAGGGGCATATGTAAATAGAGGT
ACATTGCATCAGACTTCCAATCACCCATGACTGCAATGGAGTCAAGCGGC
ACCCCGGCCTCCAAAGCAAAGGTGGCTCCACCACGTCTAAACGAGTGTGA
CCCATATTGACGGGGTGAGAGCCCAGAACGAGAGAGGTGAGCCTGAAGGA
TGCACATAAAATCCCGGTACACAAAAACCCGATTCGAGGCAAGGTGGGAA
TCCCTCCAACAAAAGGCTTGATCACAAGGAAGGGCTCCCGAGGTGAGGGA
AAAGGCACGGGACACAGCCAAAACTGGACAGAGGTGAGAAGAGGGTATGG
CAACCAGTGGTATAGTAACAGTACGTTGACCAAACTGGATGGTTTTGCTC
CACCTCACTCTGATATGCACCCCGGAACCAACAAACGAAAAATCAGACCT
AGTGAGAAAGGTACTCGACGAGAAGTCCCTCTGGGAAACCGGCAAAAGGT
GGCTCTTCCTGAAAAGACCAAAAAAGGAGACCAGACACAGTGCCCAGAAG
GAAGNAAAGGTGGCTCTtcctgaaaagaagaaaaaaggagACCAGACACA
GTGCCCAGAAGGAAGCCTGCTTGCTATCTAGGAGGTTGAGTTGGGAATGA
ATGAAAGAGAGGATATCCACAGTGATGGGGAGCTTGGGGACGGGAGGGAT
ACCCTTAGATCGCTTAATACCCTTGAGCACAGAGGACAGGAACCAGTTGT
CAAGGAGAGGGTTGGGGAAACCCATCTCCCGGTGAAGAAGACcaacaaaa
tttaaataaacACAAACAGACTGCGGCAACAGGAACCGTGCTAGAGACAT
GATCAGCAACAACATTCAGGACCCCCGGGACATGGAAAACTTTGAGGCGA
AAGTTGTN Run BLAST on NCBI transcript from alignment at sc0002257:4741..7063- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039961 ID=TCONS_00039961|Name=TCONS_00039961|organism=Clytia hemisphaerica|type=transcript|length=2323bp|location=Sequence derived from alignment at sc0002257:4741..7063- (Clytia hemisphaerica)
TTTCAGTTCTTGAAATGAAGACAATGACATGGCAAATATGTACAGGAATA
AAAACTAGAATAAAATAAATGAATACACAGATACGCGTAAAGAAAACACA
TACAAACACATATAGTTATAAAACAGCAAAAGTGACAAAATCACAAAAAC
AGTAAACAGTAGATAGTACATGTAAACAATATTGAGTATATGGCTTAAAA
TGACAAAAGCAGGAGTAATAGTACTAAAAGGCAGGTATAAATAAACAAGG
CTTTAAAATAAAACGAAATTGCTAAATTAAAAGGAAGCTCCCTAGATGCT
GGGGTGGGTGGAGGAGCAAAAATACAGCAGTCAGCACTAAGAAATGAAGA
ACTGAAAAAGGGCCATGTGAAGAAACTGAGGCCTTATATAGACATGAGAG
TGAGGCTGAACCAAGAGTCCGGATAAAACCAAAACAACCAAATGCATCTA
AACTCTGATATACAAACATATATTCTGATATAACTTAAACACAAGTGGTC
GAAAGGGGGACTAGGCAGGAAGGCACACAGTGTGATCTACATGGTATTTT
CAGTTCTTAAAATGAAGACAATGACATGGCAAATATGTACAGGAATAAAA
ACTAGAATAAAATAAATGTCCAAATCCAATGTGGGTGTTAGTTAGGTAAA
GATGAAATATAGGAAGAAATAGAATGCTGGGCGTGCAAGCGCTGGGACAG
GGGCATATGTAAATAGAGGTACATTGTATCAGACTTCCAATCACCCATGA
CTGCAATGGAGTCAAGAGGTACCCCGGCCTCCAAAGCAAAGGTGGCCCCA
CCACGTCTGAAGGAGTGTGACCCATATTGACGGGGTGAGAGCCCAGAACG
AGAGAGGTGAGCTTGAAGGATGCACATAAAATCCCGGTACACAAAAACCC
GATTCGAGGCAAGGTGGGAATCCCTCCAACAAAAGGCTTGATCGCAAGGA
AGGGNGCTGGGCGTGCAAGCGCTGGGACAGGGGCATATGTAAATAGAGGT
ACATTGCATCAGACTTCCAATCACCCATGACTGCAATGGAGTCAAGCGGC
ACCCCGGCCTCCAAAGCAAAGGTGGCTCCACCACGTCTAAACGAGTGTGA
CCCATATTGACGGGGTGAGAGCCCAGAACGAGAGAGGTGAGCCTGAAGGA
TGCACATAAAATCCCGGTACACAAAAACCCGATTCGAGGCAAGGTGGGAA
TCCCTCCAACAAAAGGCTTGATCACAAGGAAGGGCTCCCGAGGTGAGGGA
AAAGGCACGGGACACAGCCAAAACTGGACAGAGGTGAGAAGAGGGTATGG
CAACCAGTGGTATAGTAACAGTACGTTGACCAAACTGGATGGTTTTGCTC
CACCTCACTCTGATATGCACCCCGGAACCAACAAACGAAAAATCAGACCT
AGTGAGAAAGGTACTCGACGAGAAGTCCCTCTGGGAAACCGGCAAAAGGT
GGCTCTTCCTGAAAAGACCAAAAAAGGAGACCAGACACAGTGCCCAGAAG
GAAGNAAAGGTGGCTCTTCCTGAAAAGAAGAAAAAAGGAGACCAGACACA
GTGCCCAGAAGGAAGCCTGCTTGCTATCTAGGAGGTTGAGTTGGGAATGA
ATGAAAGAGAGGATATCCACAGTGATGGGGAGCTTGGGGACGGGAGGGAT
ACCCTTAGATCGCTTAATACCCTTGAGCACAGAGGACAGGAACCAGTTGT
CAAGGAGAGGGTTGGGGAAACCCATCTCCCGGTGAAGAAGACCAACAAAA
TTTAAATAAACACAAACAGACTGCGGCAACAGGAACCGTGCTAGGTAGGC
AGCATACATACAGAGGTGAACACGTTGAACTGGAGCAGGCGAAATATTAA
GCATATTACAAAACTGGAGATAGACCTTTCGGTGAGTACGGTAGGCCTTG
CGGGTATTGACAGCATAGGTGGCTTCACGATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGCGAAGACGCAAACTCTAAAAGG
CAGAGCGAAGGCATGAGCCAGACCCATATAAACCAAGAAGAAAAAAGAAA
CAGTTCTCAGACATGTGCCAGACAATGTCATCGGAAGGATCAAACTGATC
GAAACATTCACAAAGATACTGGAGAAAAGCTGCAAGATGTTTGTGTTCAT
GTAACCGAGAGACATGATCAGCAACAACATTCAGGACCCCCGGGACATGG
AAAACTTTGAGGCGAAAGTTGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039961-exon-sc0002257-1575043694:5270..7063 | TCONS_00039961-exon-sc0002257-1575043694:5270..7063 | Clytia hemisphaerica | exon |
| TCONS_00039961-exon-sc0002257-1575043694:4741..4804 | TCONS_00039961-exon-sc0002257-1575043694:4741..4804 | Clytia hemisphaerica | exon |
| TCONS_00039961-exon-sc0002257-1510915933:5270..7063 | TCONS_00039961-exon-sc0002257-1510915933:5270..7063 | Clytia hemisphaerica | exon |
| TCONS_00039961-exon-sc0002257-1510915933:4741..4804 | TCONS_00039961-exon-sc0002257-1510915933:4741..4804 | Clytia hemisphaerica | exon |
| TCONS_00039961-exon-sc0002257-1491911889:5270..7063 | TCONS_00039961-exon-sc0002257-1491911889:5270..7063 | Clytia hemisphaerica | exon |
| TCONS_00039961-exon-sc0002257-1491911889:4741..4804 | TCONS_00039961-exon-sc0002257-1491911889:4741..4804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002257 | supercontig | sc0002257:4741..7063 - |
Blast
The following BLAST results are available for this feature:
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