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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039960 ID=TCONS_00039960|Name=TCONS_00039960|organism=Clytia hemisphaerica|type=transcript|length=1305bp
TTGCTTTGAAGATCTAGCACTCTCGTATATGCATCAAgataccattaggg
taccactttctaaactctgatcaaagatgtTGGTCGGCCAGATTTGAGAA
ACTGCCTCTAAGGTTTATACTTAATTAATCTATGGTTAGTTTATGTAacg
aaaaaattcttttctgcaGATATTCGTGTGCATGCTGGAGGAGTCAGATT
TATGAAAACCTTTCATTTATTGAATGAAAGtaaactttttctaattttga
gtATTTCTTTTAATCTTAGTTTTATGAAACTGGtaatattttgacaaatc
tACGCATTAGTGTCATGCAGAGTGAAGAAGAGTCTGAAAATATTGCTGAA
GATTTCCTAAAAGGCAACTTGAAATTGGATGATTTCTTGAATAATTTCAT
TGAGAAAAGAAAGGAAACCCATCTAAGGCGTGTCAAGGAGGAGAGAATCA
AATGCCTGGTCCCATACTGATCTTTAATTTGCATCTTGGCTTAAGATAAC
GACGGAGATAAGAATGATTCCTTGAAGGAGTCAATACTGATCTTTAATCT
CACCTTGGCCTATAATAATGGAGATAGAAATGATTCCTTGGGGGAGTCAA
TACTGATCACCTTCACTTACATCGTGTCTTATGAAAATGGAGATAAACAT
TATTCCATTGAGTGGTCAGGATGATGGAGATAACCCAGATGATTCATGTG
TGTCATCATAGGTTGGTTTGTTATGGTGGAGATAATCTATTGGTAAATTG
TAACATTCGAAACTTATTATTCGATCTCGATATATGGGTTACGAGATGAG
AGTGTTGAATTTCAGCATTTTCGATAGAATGATATTATTTAATAGATAAA
AACGTCTTGGTTGCTATTTTAAGTAAATTACTCATCATAGGAGCATCTTT
TGTGCTCCTGCTGAGTAAGttgagctgaaattttgcactgGTAACACTTG
TAGTAATAGTAAGATACATTTCACTGAATGGAACAAATATTTGTACGAAG
CTTCATAATAAAACCATTTTTGCCATGATTTTATGGTTCTACTAATGAGA
CTTGGACATATGGACATATTTTTTAGCGTAAGAAGAATTTATTATATCAA
TGCAATCAATTAAAGGACTTGAAATGATGCTATCATTGTACGAAAATGGT
ATGGTAGAATGTATGTCAGATCTAGTTCGAAAGCTTGAATCTGCTTTTTC
CAACATCCATTGAAAAATGGTGTTTTGTAATGGTTATAGGGGAagattgt
tttttcaaaaagttttgataaatgcGAAAGAAATAACAAATTCATTGAAA
TTGAT Run BLAST on NCBI transcript from alignment at sc0002257:20474..22238+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039960 ID=TCONS_00039960|Name=TCONS_00039960|organism=Clytia hemisphaerica|type=transcript|length=1765bp|location=Sequence derived from alignment at sc0002257:20474..22238+ (Clytia hemisphaerica)
TTGCTTTGAAGATCTAGCACTCTCGTATATGCATCAAgataccattaggg
taccactttctaaactctgatcaaagatgtTGGTCGGCCAGATTTGAGAA
ACTGCCTCTAAGGTTTATACTTAATTAATCTATGGTTAGTTTATGTAacg
aaaaaattcttttctgcaGATATTCGTGTGCATGCTGGAGGAGTCAGATT
TATGAAAACCTTTCATTTATTGAATGAAAGtaaactttttctaattttga
gtATTTCTTTTAATCTTAGTTTTATGAAACTGGtaatattttgacaaatc
tACGCATTAGTGTCATGCAGAGTGAAGAAGAGTCTGAAAATATTGCTGAA
GATTTCCTAAAAGGTCTGATATTATTCGTTTGTATGTCTGTATATCCCAA
ATTTTTGGGGTGGTCTGGAGACAAAATAGTCGGATTTGGCCGAAATTTTA
ACAGTCTTGTTCCTGTGGTGAATATCTGTGatactttcttcatttttcaa
agaaaaattagtttttatgGTCCTGGGGACAAGTTTTGTCCCATActgag
gctaaaacttttggGCAGCCTGAACCTTGGTCAACTTTTAGTAAAATACT
GTATCAACCAACACGTATAGCACAAGATTACTTGGTGCCTTaggttttcc
tttttttaattcatactTTTCTTTTTGCAGGCAACTTGAAATTGGATGAT
TTCTTGAATAATTTCATTGAGAAAAGAAAGGTAACGCAAAtaaacccaat
tttttttattttcattttctatagccTTTGATAGAATTGTCACTACTTTC
CtataatatttatatttttattgtgGCATCGCAAatagtaaaatttaaaa
tatttctgttTATTCTTCTTTAGGAAACCCATCTAAGGCGTGTCAAGGAG
GAGAGAATCAAATGCCTGGTCCCATACTGATCTTTAATTTGCATCTTGGC
TTAAGATAACGACGGAGATAAGAATGATTCCTTGAAGGAGTCAATACTGA
TCTTTAATCTCACCTTGGCCTATAATAATGGAGATAGAAATGATTCCTTG
GGGGAGTCAATACTGATCACCTTCACTTACATCGTGTCTTATGAAAATGG
AGATAAACATTATTCCATTGAGTGGTCAGGATGATGGAGATAACCCAGAT
GATTCATGTGTGTCATCATAGGTTGGTTTGTTATGGTGGAGATAATCTAT
TGGTAAATTGTAACATTCGAAACTTATTATTCGATCTCGATATATGGGTT
ACGAGATGAGAGTGTTGAATTTCAGCATTTTCGATAGAATGATATTATTT
AATAGATAAAAACGTCTTGGTTGCTATTTTAAGTAAATTACTCATCATAG
GAGCATCTTTTGTGCTCCTGCTGAGTAAGttgagctgaaattttgcactg
GTAACACTTGTAGTAATAGTAAGATACATTTCACTGAATGGAACAAATAT
TTGTACGAAGCTTCATAATAAAACCATTTTTGCCATGATTTTATGGTTCT
ACTAATGAGACTTGGACATATGGACATATTTTTTAGCGTAAGAAGAATTT
ATTATATCAATGCAATCAATTAAAGGACTTGAAATGATGCTATCATTGTA
CGAAAATGGTATGGTAGAATGTATGTCAGATCTAGTTCGAAAGCTTGAAT
CTGCTTTTTCCAACATCCATTGAAAAATGGTGTTTTGTAATGGTTATAGG
GGAagattgttttttcaaaaagttttgataaatgcGAAAGAAATAACAAA
TTCATTGAAATTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039960-exon-sc0002257-1491911889:20474..20836 | TCONS_00039960-exon-sc0002257-1491911889:20474..20836 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1510915933:20474..20836 | TCONS_00039960-exon-sc0002257-1510915933:20474..20836 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1575043694:20474..20836 | TCONS_00039960-exon-sc0002257-1575043694:20474..20836 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1491911889:21154..21203 | TCONS_00039960-exon-sc0002257-1491911889:21154..21203 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1510915933:21154..21203 | TCONS_00039960-exon-sc0002257-1510915933:21154..21203 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1575043694:21154..21203 | TCONS_00039960-exon-sc0002257-1575043694:21154..21203 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1491911889:21347..22238 | TCONS_00039960-exon-sc0002257-1491911889:21347..22238 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1510915933:21347..22238 | TCONS_00039960-exon-sc0002257-1510915933:21347..22238 | Clytia hemisphaerica | exon |
| TCONS_00039960-exon-sc0002257-1575043694:21347..22238 | TCONS_00039960-exon-sc0002257-1575043694:21347..22238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002257 | supercontig | sc0002257:20474..22238 + |
Blast
The following BLAST results are available for this feature:
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