TCONS_00039959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039959
Unique NameTCONS_00039959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039959 ID=TCONS_00039959|Name=TCONS_00039959|organism=Clytia hemisphaerica|type=transcript|length=577bp
CTCAACATGAAGCACTTCATTTGTCGTTTTTCAATCAAACTGTTAACATA
ACAAATTTCAGATGAAATATGTTTTGGGTATTTGTTAACAAGTCTTTCGT
TATCTTTCGTTAAATTTTATCCtctgatttttgcttttttccacTAACTA
CCAACTAGAAGAACCATAGTTTTTCAACAGAAACAGAAAAGTGGATTCTC
CAACATCCTCACTACCTTACAACAAGTCACCTGAAACAAATTTAACTCCA
CCAATTTTTGCTATGCCAAAAAGGATTCCTCAAGATACTGGAGATCCTGA
CCTTGACAAACTGTTAGGTGATCTTGGTGAAAAGTCAAATTCTGAATTGG
AGCAAATCTGTAATGACCCTGATATACTGATTGACCAAATTGAAAGTATG
GAGAGTGTGAAAAAGCTACAGACCGACCGTATAAAATGTATAGAAGAAAA
TGAAGCTATTGCAAAATCTAGTCTTGACTTAGAGCCAGTGATAGACGATC
TGAAAGGAGATTTGAAAGAAACCTTTGAAACATACAATGAGCTGTTTTAT
TCATGCCAGGATAAAATACAAAGACAG
Run BLAST on NCBI

transcript from alignment at sc0002257:16459..20095+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039959 ID=TCONS_00039959|Name=TCONS_00039959|organism=Clytia hemisphaerica|type=transcript|length=3637bp|location=Sequence derived from alignment at sc0002257:16459..20095+ (Clytia hemisphaerica)
CTCAACATGAAGCACTTCATTTGTCGTTTTTCAATCAAACTGTTAACATA
ACAAATTTCAGATGAAATATGTTTTGGGTATTTGTTAACAAGTCTTTCGT
TATCTTTCGTTAAATTTTATCCtctgatttttgcttttttccacTAACTA
CCAACTAGAAGAACCATAGTTTTTCAACAGAAACAGGTAATGTATTATAA
ATGTTCTGCAACTCTCTTGAAGGTAGGTCCCTCTCTTAAATACATTAGAG
TTTCCGCTGTCGCAACGGCAACCGCGACGGCAACGTAAAAACGTGTGAAA
TCGCATATAGGTGagaaaaaatatcagcgttgtCGTTGTGGCTGATTTTT
GTTTCCGCAATTATTTTTAACAACGGCAAAGTGTATCATTTTtacaaagg
aaagaaaaatggtaaattttggagaaaatctcgaaGTTATTCTCTTCCAA
TGCAAACTAAAAATACTGTAATAgaaagaattattttgaaatgtaattat
CAACAAATTGCACAAAGTTAAAATTAggatttctaaaaatgaatacGTGA
AACTTACACCTCTTGCACAAGAAAAAAGCTaaattgttacaagaaatgat
aaaaagcttaaaaatattgaaatattttttttcaaaactgtctTTACTGT
TTGCTTGACTTtgatatttatgaaaaaatctCACGTTGTCTGACAACGCC
AAAATGAGTGATTTGCCGTCGGGCATGGCAAGAGAAACCGTCTAATTGGA
GTTTACTCAGAGTTTTGACAGCTCAAAGGtgtgaatttgatgttttcacG
TTACCGTTGCAGTTGCCGTTGCGACTGCGGAAACTCTATTATCCATTTTA
GTGTAAATTATGACTTAAACTTGCGGAAGAGAACAATATGCGTAAATATG
CGAAAATTAGatgacaaaaaagttttttaaggtTTGAAAAGATAATTGAG
TATAATTATAGTTTTATTGGTCGAACTTCTCAACTCAAAAATATCACAAC
ACCTTAATTTATTTCCGTGGCAAATGGGTTGTAGCATgggattcttataa
agtagattcTTATAAGAGAAATAAATACCctattacattttattttttcg
attttaagaggggcgtttatttgaggaggcgtttaaaagaagggggcgtt
tattgaatTATTAGCGGGACTAATACTTGTGAATaatttaaatttagtga
gtttagTAATATTCCACCGTATcaaacactttcgttttctaaattttatt
ccacaccgccgcgaaaggctatcgtaatacttttgcttttgtttagtttt
cgtagATACACAACACTTTCTTGTATaagatagctaactcgaaaatgtTA
ATTATGATAAACAAAATCGACTTAGCTAACTCGGAATAttcgaaaaattt
taatttgacaaaaaaaatcgagttagctaactaGAGAAATCAGAAATTGA
GTTAGATATTTTGATTGTGACGTCAAAATTTTCGTTTGATGATGTCATAA
CTCGGCTTTTTGCTAACTCGGTTTTCTAACTCGGTTTttctaactcggga
attccgagCCTCGAATTTGACTTGTCCAAAAAGTGAATGGActaataaag
aaaagaaactcaACAGATATCTTCATCTTActtaaaacatttcaaaactt
TATGGCTATATTTGTGTGGCTATGCTATTTCGaaaaaacttttaccaaaa
actttaattgtgataattttgatttttctctcttttcagAAAAGTGGATT
CTCCAACATCCTCACTACCTTACAACAAGTCACCTGAAACAAATTTAACT
CCACCAATTTTTGCTATGCCAAAAAGGGTACTCTTGtggttttattttaa
tttttgttgtttacaaACGTTTGTTCTTTCCCTGATGTCAATTATATGTA
GGGCAGTTGTAAATTGATCAATTTTCGATAAAACCTTGCcacatttttat
tttgaagtacTAACATATCTAACATCAAGGACTTACAAATATATTATAGC
TAGCTAACACATCTTGAACACTAGAAAGAGCTACTCTATCTTTCCAAAGC
CATGACAGCAAGATAATGTGCCATCTTTGATAAAAGTAGACCACCGTTAA
AGTATTTtgacactgcaatgacttcaagaTTTCATGGATTGCCCAAGAAG
AATTGTCATCTGGGCCATATTGTCAAGATGGCCCAGATGGCCCATAATTC
TGCCTCTATCAGGGACAAAGAAGCTTCatatagtgttttatataagacaT
CTGTGATAACTACTAATAAATTGAGTTAGTAATACTATTCCTGTGGTAGG
AATTGTATAGTATTCCAAAATGCAGCATAATTTCTGTTCcttataacacc
cccttctcacagacccactgggaacccttcccactggaaaaattgtccaa
aatatcgtccgcagtggaaaattatcttccaatttttgtccccactaaaa
ataatcaaacaaaccaatcctcactgcaaaacatGATGCTTTTTTTCTca
accccactgaattttctgacttgaaaacaaaagaattgaaatccccagcc
ataagaaatatgataatatcaatccccatcgagtttcagtccgttgtttt
tatccccactggctgaaaaaatcctaccgggtctgtgggAAGGGGGTGTC
TTatgatttaaaatcaaaagcTCAACTTGCAACTATCAGGTTTTTTTTAG
ATTCCTCAAGATACTGGAGATCCTGACCTTGACAAACTGTTAGGTGATCT
TGGTGAAAAGTCGTAAGATCGGTTTAATTAGCCTTCCTGTTTTGAAAACC
TTCAAAATCAGTTTATATAGTAATTTTCTATAGTACTTGCCTTTGACTCC
ATTTTGACGGTCATTGTTTGTATCGCAaccttcagtgttgaaaattcaaa
atctcttcTATATATTCTTTGGTTTTTTAGAAATTCTGAATTGGAGCAAA
TCTGTAATGACCCTGATATACTGATTGACCAAATTGAAAGTATGGAGAGT
GTAAGTTGTcctgtaaattttttttgtcagaaTTAGTTGAGCTAaataaa
aatgactttttcatgCCAATTTTTATGATTGTTGTTTTTCTAGGTGAAAA
AGCTACAGACCGACCGTATAAAATGTATAGAAGAAAATGAAGCTATTGCA
AGTACGTCAAATCAATGGCATTTCAAACTGCTTTTCCCTATACTTTTTTA
TCAGCATTCAAAGCCTGTTTGTAAAGAAAATCATTTAACGTATCCACTTC
AATTTGCTCGCACAGCATTTATGAAATAACTTTTTTAGAACGAttcattc
ttcttttttgagGTGCAAATAACGCAAAGTTCTATTTTATATCAATGCCA
AAACGTCTACATGCAGACCAATCTTCTTTTTTCGATGCcttgttttaaaa
atattttaatagtTTCTAGATTATGCAGGTTGCAGATTGCTATGCACTAA
GCAAAGTGTTTTCCAATACATAACACTTCCATTCTATCAAAACatgttaa
atttttatttactcCTTTGTTTAGAATCTAGTCTTGACTTAGAGCCAGTG
ATAGACGATCTGAAAGGAGATTTGAAAGAAACCTTTGAAACATACAATGA
GCTGTTTTATTCATGCCAGGATAAAATACAAAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024198XLOC_024198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039959-exon-sc0002257-1491911889:16459..16644TCONS_00039959-exon-sc0002257-1491911889:16459..16644Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1510915933:16459..16644TCONS_00039959-exon-sc0002257-1510915933:16459..16644Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1575043694:16459..16644TCONS_00039959-exon-sc0002257-1575043694:16459..16644Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1491911889:18198..18285TCONS_00039959-exon-sc0002257-1491911889:18198..18285Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1510915933:18198..18285TCONS_00039959-exon-sc0002257-1510915933:18198..18285Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1575043694:18198..18285TCONS_00039959-exon-sc0002257-1575043694:18198..18285Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1491911889:19159..19220TCONS_00039959-exon-sc0002257-1491911889:19159..19220Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1510915933:19159..19220TCONS_00039959-exon-sc0002257-1510915933:19159..19220Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1575043694:19159..19220TCONS_00039959-exon-sc0002257-1575043694:19159..19220Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1491911889:19389..19458TCONS_00039959-exon-sc0002257-1491911889:19389..19458Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1510915933:19389..19458TCONS_00039959-exon-sc0002257-1510915933:19389..19458Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1575043694:19389..19458TCONS_00039959-exon-sc0002257-1575043694:19389..19458Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1491911889:19552..19609TCONS_00039959-exon-sc0002257-1491911889:19552..19609Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1510915933:19552..19609TCONS_00039959-exon-sc0002257-1510915933:19552..19609Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1575043694:19552..19609TCONS_00039959-exon-sc0002257-1575043694:19552..19609Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1491911889:19983..20095TCONS_00039959-exon-sc0002257-1491911889:19983..20095Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1510915933:19983..20095TCONS_00039959-exon-sc0002257-1510915933:19983..20095Clytia hemisphaericaexon
TCONS_00039959-exon-sc0002257-1575043694:19983..20095TCONS_00039959-exon-sc0002257-1575043694:19983..20095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002257supercontigsc0002257:16459..20095 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53497	0	1.23393	1.84321	4.96717	8.25459	9.9151	9.47322	1.6787	5.6455	0	3.56702	2.29678	0	6.75235	3.25072	3.72398	6.19958	7.73004	13.9715	2.75157	4.84814	0.850355	5.19397	4.62415	4.9761	0	1.43631	0	0.235896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top