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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039957 ID=TCONS_00039957|Name=TCONS_00039957|organism=Clytia hemisphaerica|type=transcript|length=1871bpRun BLAST on NCBI protein sequence of TCONS_00039957-protein >TCONS_00039957-protein ID=TCONS_00039957-protein|Name=TCONS_00039957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp MMSWFFGKTPSSSSQIPATTPLQQQRIKQIKSLSNHNQNVTEIKRDNIYKRun BLAST on NCBI transcript from alignment at sc0002257:13209..22238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039957 ID=TCONS_00039957|Name=TCONS_00039957|organism=Clytia hemisphaerica|type=transcript|length=9030bp|location=Sequence derived from alignment at sc0002257:13209..22238+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002257:13209..22238+ >TCONS_00039957 ID=TCONS_00039957|Name=TCONS_00039957|organism=Clytia hemisphaerica|type=CDS|length=12948bp|location=Sequence derived from alignment at sc0002257:13209..22238+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00039957 vs. Swiss-Prot (Human)
Match: VP37A (Vacuolar protein sorting-associated protein 37A OS=Homo sapiens GN=VPS37A PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.193e-22 Identity = 50/149 (33.56%), Postives = 97/149 (65.10%), Query Frame = 2
Query: 572 EKSNSELEQICNDPDILIDQIESMESVKKLQTDRIKCIEENEAIAKSSLDLEPVIDDLKGDLKETFETYNELFYSCQDKIQRQNELSQFYETGNILTNLRISVMQSEEESENIAEDFLKGNLKLDDFLNNFIEKRKETHLRRVKEERIK 1018
E S S+L + ++L++Q ++ +K++ TD+ ++ E +A+ +L LEP ++ + + + +E ++ + + K+QRQ+ELS+ + L+++ ++EEES+NIAEDFL+G +++DDFL++F+EKR H RR KEE+++
Sbjct: 236 ELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQ 384 The following BLAST results are available for this feature:
BLAST of TCONS_00039957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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