TCONS_00039957-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00039957-protein
Unique Name	TCONS_00039957-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	331

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00039957-protein ID=TCONS_00039957-protein|Name=TCONS_00039957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MMSWFFGKTPSSSSQIPATTPLQQQRIKQIKSLSNHNQNVTEIKRDNIYK
VTFLNSNSKTFALNIHLPPEFPNEKPYITLSPKSYHPWVDSTTDEIRGCV
ALNSFYMHSDLGKVVQQIIKEMKKTSPVIKKVDSPTSSLPYNKSPETNLT
PPIFAMPKRIPQDTGDPDLDKLLGDLGEKSNSELEQICNDPDILIDQIES
MESVKKLQTDRIKCIEENEAIAKSSLDLEPVIDDLKGDLKETFETYNELF
YSCQDKIQRQNELSQFYETGNILTNLRISVMQSEEESENIAEDFLKGNLK
LDDFLNNFIEKRKETHLRRVKEERIKCLVPY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_024198	XLOC_024198	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00039957	TCONS_00039957	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000608	UBQ-conjugat_E2
IPR016135	UBQ-conjugating_enzyme/RWD
IPR009851	Mod_r

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 58..117 e-value: 1.0E-4 score: 21.8
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBIQUITIN_CONJUGAT_2	coord: 60..103 score: 8.654
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 12..190 e-value: 8.6E-6 score: 25.0
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 42..98
IPR009851	Modifier of rudimentary, Modr	PFAM	PF07200	Mod_r	coord: 178..322 e-value: 1.2E-36 score: 125.9
IPR009851	Modifier of rudimentary, Modr	PROSITE	PS51314	VPS37_C	coord: 250..331 score: 24.428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..153
None	No IPR available	SUPERFAMILY	140111	Endosomal sorting complex assembly domain	coord: 267..324

Blast

[Close]

BLAST of TCONS_00039957-protein vs. Swiss-Prot (Human)
Match: VP37A (Vacuolar protein sorting-associated protein 37A OS=Homo sapiens GN=VPS37A PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.272e-42
Identity = 116/386 (30.05%), Postives = 197/386 (51.04%), Query Frame = 0

Query:    2 MSWFFGKTPSSSSQIPAT----TPLQQQRIKQIKSLSNHNQNVTEIKRDNIYKVTFLNSNSKTFALNIHLPPEFPNEKPYITLSPKSYHPWVDSTTDEIRGCVALNSFYMHSDLGKVVQQIIKEMKKTSPVIKKVDS--------PTSSLPY----------------NKS------------------------PE----TNLTPPIFAMPKRIPQDTGD-----PDLDKLLGDLGEKSNSELEQICNDPDILIDQIESMESVKKLQTDRIKCIEENEAIAKSSLDLEPVIDDLKGDLKETFETYNELFYSCQDKIQRQNELSQFYETGNILTNLRISVMQSEEESENIAEDFLKGNLKLDDFLNNFIEKRKETHLRRVKEERIK 326
            MSW F  T S+SS    +    T LQQQ+ + I+SL N + ++ EI++D  Y++ F  +N     +NI LPP+FP EKP I++ P   H  +D     +   + +N+F MHSDLGK++Q ++ E  K  PV+    +        P+   PY                N+S                        P     +NL  PI  +   IP          PD+     +L E S S+L  +    ++L++Q  ++  +K++ TD+   ++  E +A+ +L LEP ++  +  + + +E   ++  + + K+QRQ+ELS+      +   L+++  ++EEES+NIAEDFL+G +++DDFL++F+EKR   H RR KEE+++
Sbjct:    1 MSWLFPLTKSASSSAAGSPGGLTSLQQQKQRLIESLRNSHSSIAEIQKDVEYRLPFTINNLTI-NINILLPPQFPQEKPVISVYPPIRHHLMDKQGVYVTSPL-VNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRAKEEKLQ 384

The following BLAST results are available for this feature:

BLAST of TCONS_00039957-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00039957-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VP37A	1.272e-42	30.05	Vacuolar protein sorting-associated protein 37A OS...	[more]

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TCONS_00039957-protein (polypeptide) - C. hemisphaerica