TCONS_00039947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039947
Unique NameTCONS_00039947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039947 ID=TCONS_00039947|Name=TCONS_00039947|organism=Clytia hemisphaerica|type=transcript|length=945bp
GGAGACTACTAATGTTGCTACTACTATTAAGAGTGTTTTGTCTTTTCTGT
GTGATACTTTATTTTCAACCTTAATATGAAAATCTTCTGGTCCTCTTAAT
TAATACCGTTCTTCTAtcaaaaaagctattaaaattgttcttgcaatgca
taattttcatttttttcaatttattgattTACTTAACCTCTTGTCAACTA
AATTTATGACTTTTCCTTTTCGCACAGAAAGAAAAAGTTATTATGTTATT
ATCTTGTTATTAACCAACGGCAACATGCAGAATGATGAAATACCCACAAA
TAGGAACGATTTGATTACGATTACTGTGACTGAGACATGAAACTATATGA
CAAAGAATGACATAACAGCGATTTTGTACGACTGATGTGAAATACGTATA
ACCGTTACAATTTGTTAACATGAAACCAAACCTACCAATACTgGTCATAC
TTCCACGAAAAGAAAGAAGGATATGAAGAATATCGATTATGGAAAAAAAA
GAGTCAAGaAATGTAAAACGTGCTTGGTCGAGGTCGAGGCCACCAGGAAC
AGACAACTTCGTTGCCCGAACGGGcacgaatttgaaaaaaaaaccaagCC
AGTCGAGGCAGCTACTGGGATGAAGACCATCACCCAAACAAATCGTGATT
GGGAGAAgagtATCAAAACTCTCAACGAACAACACCACTGGCACATCGTC
ACCATCAAGGCCAAGAGGCATCAAAACAGTGTCGAGTTCCAGTATCTTGG
TACCCCTGGCGTTGCCAAAAACTTCATCAACGATGAAAAGATTGGTGCTG
CTATCAAGGGCGCTTTTGAGCCTCGTTTTAAAAGAGAAGTCAAAGAATTC
AAGCCATCGTTAGGGCAAAAGCCACCCCGTGACGAATCTTCAACAACCCA
GTCTTCAACAACCCAGTCTTCAACAGCCCAGTCTTCAACAACCCN
Run BLAST on NCBI

transcript from alignment at sc0002251:2701..8219-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039947 ID=TCONS_00039947|Name=TCONS_00039947|organism=Clytia hemisphaerica|type=transcript|length=5519bp|location=Sequence derived from alignment at sc0002251:2701..8219- (Clytia hemisphaerica)
GGAGACTACTAATGTTGCTACTACTATTAAGAGTGTTTTGTCTTTTCTGT
GTGATACTTTATTTTCAACCTTAATATGAAAATCTTCTGGTCCTCTTAAT
TAATACCGTTCTTCTATCAAAAAAGCTATTAAAATTGTTCTTGCAATGCA
TAATTTTCATTTTTTTCAATTTATTGATTTACTTAACCTCTTGTCAACTA
AATTTATGACTTTTCCTTTTCGCACAGAAAGAAAAAGTTATTATGTTATT
ATCTTGTTATTAACCAACGGCAACATGCAGAATGATGAAATACCCACAAA
TAGTAAGTTTGAATAATTTTCTTTAGACCTTCTTATATCTTCTTTAAAGA
TGTTTTTCTCCTCTTTATTTTTATTTTTATCAATTTAGTAAAATCTAAAA
TCTCAACTATTAGTACATCTTATTACATTATTTTTTTCGAATCGCATAAG
ATATTACACTTGANTGGAAAAGGGAAACAGATATTTCGGGGAAATGGGCT
CGTTGGCTGCTTCTGAAAATCTAAAATCTCAACTATTAGTACATCTTATT
ACATTATTTTTTTCGAATCGCATAAGATATTCCACTTGAAGGAGTACGGA
TTACACACTTTTTAAAAGTATATACTTCTCCTTAGGGAACGATTTGATTA
CGATTACTGTGACTGAGACATGAAACTATATGACAAAGAATGACATAACA
GCGATTTTGTACGACTGATGTGAAATACGTATAACCGTTACAATTTGTTA
ACATGAAACCAAACCTACCAATACTGGTGATTTTTTCTATTTCCCAGTGA
TTTATTATTTTAAGTATCAGTTTGTTAANAACAGCGATTTTGTACGACTG
ATGTGAAATACGTATAACCGTTACAATTTGTTAACATGAAACCAAACCTA
CCAATACTGGTGATTTTTTCTATTTCCCAGTGATTTACTGTTTTAAGTAT
CAATTTGTTACTATTTATCATTTCTGATTTTGGGTCGTGTGGTGATGGGG
CATATTTCAATGTACAGTACCTAACATAGATGTATGTAATCACCTCAAGC
TTGTAGTTTCATCTCAATTAATTACACTTTTCAGGTCATACTTCCACGAA
AAGAAAGAAGGATATGAAGAATATCGATTATGGAAAAAAAAGAGTCAAGG
TATATTGTGTTTACATAGTTCGTCCCCCTTAAGGGGATGACACCTTCCAA
AAAAATGAAGAAGGGGGGGCGGGGGTCAGAAATTTTCATGAAAAAGGGGG
GTAGGAAGGAAGGGGGGTTACTTATAAACTCTAGACTATTTTCAAGCACT
GTTATGAAATTTGGTCTTCATGAAAGAAAGTTTTCTGTTAGAGTAGTTTA
GCTGAGTGAAAAAGAAGAAAGAAAGTTTATTATTTCGCTTTTTCTCTCTA
AAGATATTTCACATATATTTGTTAGCTGTTTTTGTCCAAAATCCTTGGGG
GGTAGACATTTTTAGAGGTTGAGGGGGTGCCAAGAAGGGGTGTCAGACCC
TTTTCCGCACTATGGTTTAGCTCGATCAAATAACACAAGTCACCTTCCTT
CCTGAGTAATCTAGAGGTCTTTTGGTTCGTCTGCAGAAGAGTTTCTACAG
TGCAATACTAGTGAGGTCTAAATGAGGTAAACAAAGAAAAAGTTCACACC
TTTTACGCTGAGTATAGGTAGTACACCCCTGTGTCACAGACCCGGTGGAC
CCCCCCACCCCGCTGAATAAATAGGCCAAAAAATCGTCCCCGTTAGAAAA
CACATCCTACAATTTCAACCCCACTGCGAAATTGCTCTATGATTTTATCC
CCATTGAAAACTGAATGTAAAAAATTACACTCCAAAATCATCCCCACTGG
AATTTTTGAACTGGAAACAATAGATTTTCTATCCCCATTGGCATTTTAAT
AGAAATTTTCATCCCCACTGAGGGAAAAAGTTCTACCGGGGCACTGAGAC
AGGGGTGTGGTAGTGTAATCTAAAAAGAAAGTAAAAACGAAAAAAAGCTC
TTAGAAAACCTCCCTAAATGGGTTTTCCCTCTGAAAAATATTGAAATTGG
CGAGGGTGGGAAGGGGAGTAACGCTTAGCATCAAAGATGTATCCNGAAGT
TCAATATTATTTTTTTCTCATCAGCTTGTTATATTGCTTCTGTTACATGT
CGTTATTATATTTTAGAAGTCAAAGAATTCAAGCCATCGTTAGGGCAAAA
GCCACCCCGTGACGAATCTTCAACAACCCAGTCTTCAACAACCCAGTCTT
CAACAGCCCAGTCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAACA
CTCCAGTCTTCAACGGTGCCTCTAGAGGAAGCCTTGGAAGTTCTTGAAGA
AGGAAATGTTTAATATTTAAAAGTACTCGATTGTGGTTTCAAAACTTCCC
GGTGAATTTCCCTTTTTTCTCAAATATTATGACCTTGATTGTAGCTGGGG
ACCTTGAGTTTTGTATAAGATTCCCATTACTGCACTAAGTAACTTTCCGA
AGCTCAATTTTAACTATCCTAAGTCCTGGTCTTTTTCCGCTAGAAAAGTG
GCAAAGGAATTTTAGTGCGGAAATGGGATACTAAACTTTAATACTTGAGC
TATTCCCTTCCTACTCACCTGTCTTAAACAGATATAAATCAGTGCCAAAT
CAATTTTCAATTTATCAAGCATTCGTCAGTCCTTCATTCTCCTTTGTTTA
CATTTTTAGCGATTCTCTATTTAGCTCTAGTTCGCATTCCGTTTAGCCTG
ATTCATTTGGGCGATTCCTTTTTTTCAGCTTTTTTCTGTCCTCTACAAGG
GAGATTCTGGGGAGAAGCTATCCTCACCTGCGGACAGGCCCCGTAACAGA
TGAGTGTTGTTTCCCCCTAGGGACCGCTTTTGTCCCTGTGATCTATACTG
GTCACTCCACTTGTACATATTCGAAAAACGAAAACTTAGATATATTAGGG
CTCTTTATTATTTTTTTAAATGTAAATACTACTTAGAGACTATTTTATGA
TTATATACTTTTATGATTATATACCATAATGTTTGGTGATAAAAGAGACG
ATAAAAAAACAATAGTTTCATGCGTCTCAAACAAAACTTTTTTGGGAATA
CGTTGATGAAGTGAAGTGTAAAAGGATAGATAAAAAACTTTTTGAAAAAA
TCAATTCACACTTCTCTGATTGATATTTAAACTGAATCGCTTTATCTCCC
ATTGATTGTTTGATTGATTATATTGTATTTAAAAAAATTACTAATTGAAT
AAGAAAAGAATTACGANTTGATTGATTATATTGTATTTAAAAAAATTACT
AATTGAATAAGAAAAGAATTACGAATCTCTAGTTCATTTCTCCACCCCCA
TCGATGTGTTTACCCTCTCCAGACTCCCCTCCCTACATTTAATCGATTAC
ACGTTTTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAA
TGCCTAAAAACTAAGAAACATCTAAGAAACATGCTGAGGCTGAGAATGAG
AAAATAACTATTTTAATTCGGTTTTTCTTAAGAACCTTCCAATTCAGCCT
GCAATGAGGCTGATTATGTCAAAAAGTTTAAAAACATGTAAGAAACATTT
AAGGCTCAAAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAA
CNCCCGGTGGCCCCCCCCCCCCACCCCGCTGAATAAATAGGCCAAAAAAT
CGTCCCCGTTAGAAAACACATCCTACAATTTCAACCCCACTACGAAATTG
CTCTATGATTTTATCCCCATTGAAAACTGAATGTAAAAAATTGCACTCCA
AAATCATCCCCACTGGAATTTTTGAACTGGAAAAAATAGATTTAATTTCT
ATCCCCATTGGCATTTTAATAGAAATTTTCATCCCCACTGAGGGAAAAAG
TTCTACCGGGGCACTGAGACAGGGGTGTGGTAGTGTAATCTAAAAAGAAA
GTAAAAACGAAAAAAAGTTCTTAGCAAACCTCCCTAAATGGGTTTTCCCT
CTGAAAAATATTGAAATTGGCGAGGGTGGGAAGGGGAGTAACGCTTAGCA
TCAAAGATGTATCCAAAATTGGTAACCTGATAACAGATGTTCATAATTTT
CTTACGCGCACGGTAAACCTCTAAAGGCGCTTGAAAATTATACATCTGAG
GAAAATAGTCCTCCCGCGGAAAATTCTACAACAAGAATCTTGTTGTGCGC
CGGAAAAATAAAAACTTATACGGCGCCCTATTCATTAAGACAATCGCGCA
ATTTTGTTGTCATTCCCAGTCCTTTTAGACGAACGCGGTCCTTACGATTT
CGAGATTGCATATTCGTCAGATTGTTTGTTTTCACACATCCCTTTAGAGC
TTCAGCGTGGTGTGCAGAAAACATTCACAATCTGATCTCAGGTTAAAAAT
TGGTGAATTACAAAATGCATAATGCATAAAAGAAGCATAAGGGAGTGAAT
TAGCATTGGTTTTATTTTGTATTTTAGAAATGTAAAACGTGCTTGGTCGA
GGTCGAGGCCACCAGGAACAGACAACTTCGTTGCCCGAACGGGCACGAAT
TTGAAAAAAAAACCAAGCCAGTCGAGGCAGCTACTGGGATGAAGACCATC
ACCCAAACAAATCGTGATTGGGAGAAGAGTGTAAATATTTTTTTCTTGTG
GATTTTACATTAATTGACTCACCTAATAGTGAAAGTTCGATTCACTTTTT
TATGGATGAAATTCATTTGAATTAGCTAATTTACTTAGCTCATTTTGTTA
AAAGAACACCTGAAGAAAGGCTCCCTGCATGGAAACTGTTAAAAAATAAA
AGCTTCAAGCTACATTCTACCTTCATTTAATTTATTTCATTAGATCAAAA
CTCTCAACGAACAACACCACTGGCACATCGTCACCATCAAGGCCAAGAGG
CATCAAAACAGTGTCGAGTTCCAGTATCTTGGTACCCCTGGCGTTGCCAA
AAACTTCATCAACGATGAAAAGATTGGTGCTGCTATCAAGGGCGCTTTTG
AGCCTCGTTTTAAAAGAGGTAGGGAATTGTTCATTTGCATTACTACATAA
GGTAGGCTCAATTAACTCGTTGTTGCAGATTTATCGTTAGACAATTATGA
ATCGTAGAATTTAAAATGAACTTTTCATAATTTAAATTCGGTATTTTCGA
TGTTAGGCCGAAACTTGTGAGTGCCACAGCTCGTCACAATGTCTGCTATT
CTACCCACACCCTTGTATCAGAATAATATTAGCCAATCCCTCTCACATGC
CATGCGTTGACCTAGGCAAAGGTACATTTACTTGCAAAGAACATGATAAC
CACTATACTACTAATCGCTATGTAAAACTTCTTGTAGTGGAAGTTCAATA
TTATTTTTTTCTCATCAGCTTGTTATATTGCTTCTGTTACATGTCGTTAT
TATATTTTAGAAGTCAAAGAATTCAAGCCATCGTTAGGGCAAAAGCCACC
CCGTGACGAATCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAACAG
CCCAGTCTTCAACAACCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024189XLOC_024189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039947-exon-sc0002251-1575043694:7918..8219TCONS_00039947-exon-sc0002251-1575043694:7918..8219Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1575043694:7444..7584TCONS_00039947-exon-sc0002251-1575043694:7444..7584Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1575043694:7071..7135TCONS_00039947-exon-sc0002251-1575043694:7071..7135Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1575043694:3590..3742TCONS_00039947-exon-sc0002251-1575043694:3590..3742Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1575043694:3202..3376TCONS_00039947-exon-sc0002251-1575043694:3202..3376Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1575043694:2701..2809TCONS_00039947-exon-sc0002251-1575043694:2701..2809Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1510915933:7918..8219TCONS_00039947-exon-sc0002251-1510915933:7918..8219Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1510915933:7444..7584TCONS_00039947-exon-sc0002251-1510915933:7444..7584Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1510915933:7071..7135TCONS_00039947-exon-sc0002251-1510915933:7071..7135Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1510915933:3590..3742TCONS_00039947-exon-sc0002251-1510915933:3590..3742Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1510915933:3202..3376TCONS_00039947-exon-sc0002251-1510915933:3202..3376Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1510915933:2701..2809TCONS_00039947-exon-sc0002251-1510915933:2701..2809Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1491911889:7918..8219TCONS_00039947-exon-sc0002251-1491911889:7918..8219Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1491911889:7444..7584TCONS_00039947-exon-sc0002251-1491911889:7444..7584Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1491911889:7071..7135TCONS_00039947-exon-sc0002251-1491911889:7071..7135Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1491911889:3590..3742TCONS_00039947-exon-sc0002251-1491911889:3590..3742Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1491911889:3202..3376TCONS_00039947-exon-sc0002251-1491911889:3202..3376Clytia hemisphaericaexon
TCONS_00039947-exon-sc0002251-1491911889:2701..2809TCONS_00039947-exon-sc0002251-1491911889:2701..2809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002251supercontigsc0002251:2701..8219 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.12422	4.41101	3.64841	5.20118	1.38732	1.82542	2.68012	0.733778	1.23284	1.40038	0	0.0589077	0	0	0	0	0	0	0	0	1.02552	1.56901	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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