TCONS_00039946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039946
Unique NameTCONS_00039946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039946 ID=TCONS_00039946|Name=TCONS_00039946|organism=Clytia hemisphaerica|type=transcript|length=619bp
ATTAACCAACGGCAACATGCAGAATGATGAAATACCCACAAATAGGAACG
ATTTGATTACGATTACTGTGACTGAGACATGAAACTATATGACAAAGAAT
GACATAACAGCGATTTTGTCATACTTCCACGAAAAGAAAGAAGGATATGA
AGAATATCGATTATGGAAAAAAAAGAGTCAAGaAATGTAAAACGTGCTTG
GTCGAGGTCGAGGCCACCAGGAACAGACAACTTCGTTGCCCGAACGGGca
cgaatttgaaaaaaaaaccaagCCAGTCGAGGCAGCTACTGGGATGAAGA
CCATCACCCAAACAAATCGTGATTGGGAGAAgagtATCAAAACTCTCAAC
GAACAACACCACTGGCACATCGTCACCATCAAGGCCAAGAGGCATCAAAA
CAGTGTCGAGTTCCAGTATCTTGGTACCCCTGGCGTTGCCAAAAACTTCA
TCAACGATGAAAAGATTGGTGCTGCTATCAAGGGCGCTTTTGAGCCTCGT
TTTAAAAGAGAAGTCAAAGAATTCAAGCCATCGTTAGGGCAAAAGCCACC
CCGTGACGAATCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAACAG
CCCAGTCTTCAACAACCCN
Run BLAST on NCBI

transcript from alignment at sc0002251:2701..7961-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039946 ID=TCONS_00039946|Name=TCONS_00039946|organism=Clytia hemisphaerica|type=transcript|length=5261bp|location=Sequence derived from alignment at sc0002251:2701..7961- (Clytia hemisphaerica)
ATTAACCAACGGCAACATGCAGAATGATGAAATACCCACAAATAGTAAGT
TTGAATAATTTTCTTTAGACCTTCTTATATCTTCTTTAAAGATGTTTTTC
TCCTCTTTATTTTTATTTTTATCAATTTAGTAAAATCTAAAATCTCAACT
ATTAGTACATCTTATTACATTATTTTTTTCGAATCGCATAAGATATTACA
CTTGANTGGAAAAGGGAAACAGATATTTCGGGGAAATGGGCTCGTTGGCT
GCTTCTGAAAATCTAAAATCTCAACTATTAGTACATCTTATTACATTATT
TTTTTCGAATCGCATAAGATATTCCACTTGAAGGAGTACGGATTACACAC
TTTTTAAAAGTATATACTTCTCCTTAGGGAACGATTTGATTACGATTACT
GTGACTGAGACATGAAACTATATGACAAAGAATGACATAACAGCGATTTT
GTACGACTGATGTGAAATACGTATAACCGTTACAATTTGTTAACATGAAA
CCAAACCTACCAATACTGGTGATTTTTTCTATTTCCCAGTGATTTATTAT
TTTAAGTATCAGTTTGTTAANAACAGCGATTTTGTACGACTGATGTGAAA
TACGTATAACCGTTACAATTTGTTAACATGAAACCAAACCTACCAATACT
GGTGATTTTTTCTATTTCCCAGTGATTTACTGTTTTAAGTATCAATTTGT
TACTATTTATCATTTCTGATTTTGGGTCGTGTGGTGATGGGGCATATTTC
AATGTACAGTACCTAACATAGATGTATGTAATCACCTCAAGCTTGTAGTT
TCATCTCAATTAATTACACTTTTCAGGTCATACTTCCACGAAAAGAAAGA
AGGATATGAAGAATATCGATTATGGAAAAAAAAGAGTCAAGGTATATTGT
GTTTACATAGTTCGTCCCCCTTAAGGGGATGACACCTTCCAAAAAAATGA
AGAAGGGGGGGCGGGGGTCAGAAATTTTCATGAAAAAGGGGGGTAGGAAG
GAAGGGGGGTTACTTATAAACTCTAGACTATTTTCAAGCACTGTTATGAA
ATTTGGTCTTCATGAAAGAAAGTTTTCTGTTAGAGTAGTTTAGCTGAGTG
AAAAAGAAGAAAGAAAGTTTATTATTTCGCTTTTTCTCTCTAAAGATATT
TCACATATATTTGTTAGCTGTTTTTGTCCAAAATCCTTGGGGGGTAGACA
TTTTTAGAGGTTGAGGGGGTGCCAAGAAGGGGTGTCAGACCCTTTTCCGC
ACTATGGTTTAGCTCGATCAAATAACACAAGTCACCTTCCTTCCTGAGTA
ATCTAGAGGTCTTTTGGTTCGTCTGCAGAAGAGTTTCTACAGTGCAATAC
TAGTGAGGTCTAAATGAGGTAAACAAAGAAAAAGTTCACACCTTTTACGC
TGAGTATAGGTAGTACACCCCTGTGTCACAGACCCGGTGGACCCCCCCAC
CCCGCTGAATAAATAGGCCAAAAAATCGTCCCCGTTAGAAAACACATCCT
ACAATTTCAACCCCACTGCGAAATTGCTCTATGATTTTATCCCCATTGAA
AACTGAATGTAAAAAATTACACTCCAAAATCATCCCCACTGGAATTTTTG
AACTGGAAACAATAGATTTTCTATCCCCATTGGCATTTTAATAGAAATTT
TCATCCCCACTGAGGGAAAAAGTTCTACCGGGGCACTGAGACAGGGGTGT
GGTAGTGTAATCTAAAAAGAAAGTAAAAACGAAAAAAAGCTCTTAGAAAA
CCTCCCTAAATGGGTTTTCCCTCTGAAAAATATTGAAATTGGCGAGGGTG
GGAAGGGGAGTAACGCTTAGCATCAAAGATGTATCCNGAAGTTCAATATT
ATTTTTTTCTCATCAGCTTGTTATATTGCTTCTGTTACATGTCGTTATTA
TATTTTAGAAGTCAAAGAATTCAAGCCATCGTTAGGGCAAAAGCCACCCC
GTGACGAATCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAACAGCC
CAGTCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAACACTCCAGTC
TTCAACGGTGCCTCTAGAGGAAGCCTTGGAAGTTCTTGAAGAAGGAAATG
TTTAATATTTAAAAGTACTCGATTGTGGTTTCAAAACTTCCCGGTGAATT
TCCCTTTTTTCTCAAATATTATGACCTTGATTGTAGCTGGGGACCTTGAG
TTTTGTATAAGATTCCCATTACTGCACTAAGTAACTTTCCGAAGCTCAAT
TTTAACTATCCTAAGTCCTGGTCTTTTTCCGCTAGAAAAGTGGCAAAGGA
ATTTTAGTGCGGAAATGGGATACTAAACTTTAATACTTGAGCTATTCCCT
TCCTACTCACCTGTCTTAAACAGATATAAATCAGTGCCAAATCAATTTTC
AATTTATCAAGCATTCGTCAGTCCTTCATTCTCCTTTGTTTACATTTTTA
GCGATTCTCTATTTAGCTCTAGTTCGCATTCCGTTTAGCCTGATTCATTT
GGGCGATTCCTTTTTTTCAGCTTTTTTCTGTCCTCTACAAGGGAGATTCT
GGGGAGAAGCTATCCTCACCTGCGGACAGGCCCCGTAACAGATGAGTGTT
GTTTCCCCCTAGGGACCGCTTTTGTCCCTGTGATCTATACTGGTCACTCC
ACTTGTACATATTCGAAAAACGAAAACTTAGATATATTAGGGCTCTTTAT
TATTTTTTTAAATGTAAATACTACTTAGAGACTATTTTATGATTATATAC
TTTTATGATTATATACCATAATGTTTGGTGATAAAAGAGACGATAAAAAA
ACAATAGTTTCATGCGTCTCAAACAAAACTTTTTTGGGAATACGTTGATG
AAGTGAAGTGTAAAAGGATAGATAAAAAACTTTTTGAAAAAATCAATTCA
CACTTCTCTGATTGATATTTAAACTGAATCGCTTTATCTCCCATTGATTG
TTTGATTGATTATATTGTATTTAAAAAAATTACTAATTGAATAAGAAAAG
AATTACGANTTGATTGATTATATTGTATTTAAAAAAATTACTAATTGAAT
AAGAAAAGAATTACGAATCTCTAGTTCATTTCTCCACCCCCATCGATGTG
TTTACCCTCTCCAGACTCCCCTCCCTACATTTAATCGATTACACGTTTTT
TTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCTAAA
AACTAAGAAACATCTAAGAAACATGCTGAGGCTGAGAATGAGAAAATAAC
TATTTTAATTCGGTTTTTCTTAAGAACCTTCCAATTCAGCCTGCAATGAG
GCTGATTATGTCAAAAAGTTTAAAAACATGTAAGAAACATTTAAGGCTCA
AAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACNCCCGGT
GGCCCCCCCCCCCCACCCCGCTGAATAAATAGGCCAAAAAATCGTCCCCG
TTAGAAAACACATCCTACAATTTCAACCCCACTACGAAATTGCTCTATGA
TTTTATCCCCATTGAAAACTGAATGTAAAAAATTGCACTCCAAAATCATC
CCCACTGGAATTTTTGAACTGGAAAAAATAGATTTAATTTCTATCCCCAT
TGGCATTTTAATAGAAATTTTCATCCCCACTGAGGGAAAAAGTTCTACCG
GGGCACTGAGACAGGGGTGTGGTAGTGTAATCTAAAAAGAAAGTAAAAAC
GAAAAAAAGTTCTTAGCAAACCTCCCTAAATGGGTTTTCCCTCTGAAAAA
TATTGAAATTGGCGAGGGTGGGAAGGGGAGTAACGCTTAGCATCAAAGAT
GTATCCAAAATTGGTAACCTGATAACAGATGTTCATAATTTTCTTACGCG
CACGGTAAACCTCTAAAGGCGCTTGAAAATTATACATCTGAGGAAAATAG
TCCTCCCGCGGAAAATTCTACAACAAGAATCTTGTTGTGCGCCGGAAAAA
TAAAAACTTATACGGCGCCCTATTCATTAAGACAATCGCGCAATTTTGTT
GTCATTCCCAGTCCTTTTAGACGAACGCGGTCCTTACGATTTCGAGATTG
CATATTCGTCAGATTGTTTGTTTTCACACATCCCTTTAGAGCTTCAGCGT
GGTGTGCAGAAAACATTCACAATCTGATCTCAGGTTAAAAATTGGTGAAT
TACAAAATGCATAATGCATAAAAGAAGCATAAGGGAGTGAATTAGCATTG
GTTTTATTTTGTATTTTAGAAATGTAAAACGTGCTTGGTCGAGGTCGAGG
CCACCAGGAACAGACAACTTCGTTGCCCGAACGGGCACGAATTTGAAAAA
AAAACCAAGCCAGTCGAGGCAGCTACTGGGATGAAGACCATCACCCAAAC
AAATCGTGATTGGGAGAAGAGTGTAAATATTTTTTTCTTGTGGATTTTAC
ATTAATTGACTCACCTAATAGTGAAAGTTCGATTCACTTTTTTATGGATG
AAATTCATTTGAATTAGCTAATTTACTTAGCTCATTTTGTTAAAAGAACA
CCTGAAGAAAGGCTCCCTGCATGGAAACTGTTAAAAAATAAAAGCTTCAA
GCTACATTCTACCTTCATTTAATTTATTTCATTAGATCAAAACTCTCAAC
GAACAACACCACTGGCACATCGTCACCATCAAGGCCAAGAGGCATCAAAA
CAGTGTCGAGTTCCAGTATCTTGGTACCCCTGGCGTTGCCAAAAACTTCA
TCAACGATGAAAAGATTGGTGCTGCTATCAAGGGCGCTTTTGAGCCTCGT
TTTAAAAGAGGTAGGGAATTGTTCATTTGCATTACTACATAAGGTAGGCT
CAATTAACTCGTTGTTGCAGATTTATCGTTAGACAATTATGAATCGTAGA
ATTTAAAATGAACTTTTCATAATTTAAATTCGGTATTTTCGATGTTAGGC
CGAAACTTGTGAGTGCCACAGCTCGTCACAATGTCTGCTATTCTACCCAC
ACCCTTGTATCAGAATAATATTAGCCAATCCCTCTCACATGCCATGCGTT
GACCTAGGCAAAGGTACATTTACTTGCAAAGAACATGATAACCACTATAC
TACTAATCGCTATGTAAAACTTCTTGTAGTGGAAGTTCAATATTATTTTT
TTCTCATCAGCTTGTTATATTGCTTCTGTTACATGTCGTTATTATATTTT
AGAAGTCAAAGAATTCAAGCCATCGTTAGGGCAAAAGCCACCCCGTGACG
AATCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAACAGCCCAGTCT
TCAACAACCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024189XLOC_024189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039946-exon-sc0002251-1575043694:7918..7961TCONS_00039946-exon-sc0002251-1575043694:7918..7961Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1575043694:7512..7584TCONS_00039946-exon-sc0002251-1575043694:7512..7584Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1575043694:7071..7135TCONS_00039946-exon-sc0002251-1575043694:7071..7135Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1575043694:3590..3742TCONS_00039946-exon-sc0002251-1575043694:3590..3742Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1575043694:3202..3376TCONS_00039946-exon-sc0002251-1575043694:3202..3376Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1575043694:2701..2809TCONS_00039946-exon-sc0002251-1575043694:2701..2809Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1510915933:7918..7961TCONS_00039946-exon-sc0002251-1510915933:7918..7961Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1510915933:7512..7584TCONS_00039946-exon-sc0002251-1510915933:7512..7584Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1510915933:7071..7135TCONS_00039946-exon-sc0002251-1510915933:7071..7135Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1510915933:3590..3742TCONS_00039946-exon-sc0002251-1510915933:3590..3742Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1510915933:3202..3376TCONS_00039946-exon-sc0002251-1510915933:3202..3376Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1510915933:2701..2809TCONS_00039946-exon-sc0002251-1510915933:2701..2809Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1491911889:7918..7961TCONS_00039946-exon-sc0002251-1491911889:7918..7961Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1491911889:7512..7584TCONS_00039946-exon-sc0002251-1491911889:7512..7584Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1491911889:7071..7135TCONS_00039946-exon-sc0002251-1491911889:7071..7135Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1491911889:3590..3742TCONS_00039946-exon-sc0002251-1491911889:3590..3742Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1491911889:3202..3376TCONS_00039946-exon-sc0002251-1491911889:3202..3376Clytia hemisphaericaexon
TCONS_00039946-exon-sc0002251-1491911889:2701..2809TCONS_00039946-exon-sc0002251-1491911889:2701..2809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002251supercontigsc0002251:2701..7961 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.57351	4.86039	2.98736	12.4153	0.858826	1.67042	1.06879	1.62559	0.431518	0	0.168681	0	0	0	0	0	0	0	0	0	0	1.49552	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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