TCONS_00039945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039945
Unique NameTCONS_00039945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039945 ID=TCONS_00039945|Name=TCONS_00039945|organism=Clytia hemisphaerica|type=transcript|length=685bp
CAGAATGATGAAATACCCACAAATATATATACTTCTCCTTAGGGAACGAT
TTGATTACGATTACTGTGACTGAGACATGAAACTATATGACAAAGAATGA
CATAACAGCGATTTTGTACGACTGATGTGAAATACGTATAACCGTTACAA
TTTGTTAACATGAAACCAAACCTACCAATACTgGTCATACTTCCACGAAA
AGAAAGAAGGATATGAAGAATATCGATTATGGAAAAAAAAGAGTCAAGaA
ATGTAAAACGTGCTTGGTCGAGGTCGAGGCCACCAGGAACAGACAACTTC
GTTGCCCGAACGGGcacgaatttgaaaaaaaaaccaagCCAGTCGAGGCA
GCTACTGGGATGAAGACCATCACCCAAACAAATCGTGATTGGGAGAAgag
tATCAAAACTCTCAACGAACAACACCACTGGCACATCGTCACCATCAAGG
CCAAGAGGCATCAAAACAGTGTCGAGTTCCAGTATCTTGGTACCCCTGGC
GTTGCCAAAAACTTCATCAACGATGAAAAGATTGGTGCTGCTATCAAGGG
CGCTTTTGAGCCTCGTTTTAAAAGAGAAGTCAAAGAATTCAAGCCATCGT
TAGGGCAAAAGCCACCCCGTGACGAATCTTCAACAACCCAGTCTTCAACA
ACCCAGTCTTCAACAGCCCAGTCTTCAACAACCCN
Run BLAST on NCBI

protein sequence of TCONS_00039945-protein

>TCONS_00039945-protein ID=TCONS_00039945-protein|Name=TCONS_00039945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKNIDYGKKRVKKCKTCLVEVEATRNRQLRCPNGHEFEKKTKPVEAATGM
KTITQTNRDWEKSIKTLNEQHHWHIVTIKAKRHQNSVEFQYLGTPGVAKN
FINDEKIGAAIKGAFEPRFKREVKEFKPSLGQKPPRDESSTTQSSTTQSS
TAQSSTT
Run BLAST on NCBI

transcript from alignment at sc0002251:2701..7942-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039945 ID=TCONS_00039945|Name=TCONS_00039945|organism=Clytia hemisphaerica|type=transcript|length=5242bp|location=Sequence derived from alignment at sc0002251:2701..7942- (Clytia hemisphaerica)
CAGAATGATGAAATACCCACAAATAGTAAGTTTGAATAATTTTCTTTAGA
CCTTCTTATATCTTCTTTAAAGATGTTTTTCTCCTCTTTATTTTTATTTT
TATCAATTTAGTAAAATCTAAAATCTCAACTATTAGTACATCTTATTACA
TTATTTTTTTCGAATCGCATAAGATATTACACTTGANTGGAAAAGGGAAA
CAGATATTTCGGGGAAATGGGCTCGTTGGCTGCTTCTGAAAATCTAAAAT
CTCAACTATTAGTACATCTTATTACATTATTTTTTTCGAATCGCATAAGA
TATTCCACTTGAAGGAGTACGGATTACACACTTTTTAAAAGTATATACTT
CTCCTTAGGGAACGATTTGATTACGATTACTGTGACTGAGACATGAAACT
ATATGACAAAGAATGACATAACAGCGATTTTGTACGACTGATGTGAAATA
CGTATAACCGTTACAATTTGTTAACATGAAACCAAACCTACCAATACTGG
TGATTTTTTCTATTTCCCAGTGATTTATTATTTTAAGTATCAGTTTGTTA
ANAACAGCGATTTTGTACGACTGATGTGAAATACGTATAACCGTTACAAT
TTGTTAACATGAAACCAAACCTACCAATACTGGTGATTTTTTCTATTTCC
CAGTGATTTACTGTTTTAAGTATCAATTTGTTACTATTTATCATTTCTGA
TTTTGGGTCGTGTGGTGATGGGGCATATTTCAATGTACAGTACCTAACAT
AGATGTATGTAATCACCTCAAGCTTGTAGTTTCATCTCAATTAATTACAC
TTTTCAGGTCATACTTCCACGAAAAGAAAGAAGGATATGAAGAATATCGA
TTATGGAAAAAAAAGAGTCAAGGTATATTGTGTTTACATAGTTCGTCCCC
CTTAAGGGGATGACACCTTCCAAAAAAATGAAGAAGGGGGGGCGGGGGTC
AGAAATTTTCATGAAAAAGGGGGGTAGGAAGGAAGGGGGGTTACTTATAA
ACTCTAGACTATTTTCAAGCACTGTTATGAAATTTGGTCTTCATGAAAGA
AAGTTTTCTGTTAGAGTAGTTTAGCTGAGTGAAAAAGAAGAAAGAAAGTT
TATTATTTCGCTTTTTCTCTCTAAAGATATTTCACATATATTTGTTAGCT
GTTTTTGTCCAAAATCCTTGGGGGGTAGACATTTTTAGAGGTTGAGGGGG
TGCCAAGAAGGGGTGTCAGACCCTTTTCCGCACTATGGTTTAGCTCGATC
AAATAACACAAGTCACCTTCCTTCCTGAGTAATCTAGAGGTCTTTTGGTT
CGTCTGCAGAAGAGTTTCTACAGTGCAATACTAGTGAGGTCTAAATGAGG
TAAACAAAGAAAAAGTTCACACCTTTTACGCTGAGTATAGGTAGTACACC
CCTGTGTCACAGACCCGGTGGACCCCCCCACCCCGCTGAATAAATAGGCC
AAAAAATCGTCCCCGTTAGAAAACACATCCTACAATTTCAACCCCACTGC
GAAATTGCTCTATGATTTTATCCCCATTGAAAACTGAATGTAAAAAATTA
CACTCCAAAATCATCCCCACTGGAATTTTTGAACTGGAAACAATAGATTT
TCTATCCCCATTGGCATTTTAATAGAAATTTTCATCCCCACTGAGGGAAA
AAGTTCTACCGGGGCACTGAGACAGGGGTGTGGTAGTGTAATCTAAAAAG
AAAGTAAAAACGAAAAAAAGCTCTTAGAAAACCTCCCTAAATGGGTTTTC
CCTCTGAAAAATATTGAAATTGGCGAGGGTGGGAAGGGGAGTAACGCTTA
GCATCAAAGATGTATCCNGAAGTTCAATATTATTTTTTTCTCATCAGCTT
GTTATATTGCTTCTGTTACATGTCGTTATTATATTTTAGAAGTCAAAGAA
TTCAAGCCATCGTTAGGGCAAAAGCCACCCCGTGACGAATCTTCAACAAC
CCAGTCTTCAACAACCCAGTCTTCAACAGCCCAGTCTTCAACAACCCAGT
CTTCAACAACCCAGTCTTCAACACTCCAGTCTTCAACGGTGCCTCTAGAG
GAAGCCTTGGAAGTTCTTGAAGAAGGAAATGTTTAATATTTAAAAGTACT
CGATTGTGGTTTCAAAACTTCCCGGTGAATTTCCCTTTTTTCTCAAATAT
TATGACCTTGATTGTAGCTGGGGACCTTGAGTTTTGTATAAGATTCCCAT
TACTGCACTAAGTAACTTTCCGAAGCTCAATTTTAACTATCCTAAGTCCT
GGTCTTTTTCCGCTAGAAAAGTGGCAAAGGAATTTTAGTGCGGAAATGGG
ATACTAAACTTTAATACTTGAGCTATTCCCTTCCTACTCACCTGTCTTAA
ACAGATATAAATCAGTGCCAAATCAATTTTCAATTTATCAAGCATTCGTC
AGTCCTTCATTCTCCTTTGTTTACATTTTTAGCGATTCTCTATTTAGCTC
TAGTTCGCATTCCGTTTAGCCTGATTCATTTGGGCGATTCCTTTTTTTCA
GCTTTTTTCTGTCCTCTACAAGGGAGATTCTGGGGAGAAGCTATCCTCAC
CTGCGGACAGGCCCCGTAACAGATGAGTGTTGTTTCCCCCTAGGGACCGC
TTTTGTCCCTGTGATCTATACTGGTCACTCCACTTGTACATATTCGAAAA
ACGAAAACTTAGATATATTAGGGCTCTTTATTATTTTTTTAAATGTAAAT
ACTACTTAGAGACTATTTTATGATTATATACTTTTATGATTATATACCAT
AATGTTTGGTGATAAAAGAGACGATAAAAAAACAATAGTTTCATGCGTCT
CAAACAAAACTTTTTTGGGAATACGTTGATGAAGTGAAGTGTAAAAGGAT
AGATAAAAAACTTTTTGAAAAAATCAATTCACACTTCTCTGATTGATATT
TAAACTGAATCGCTTTATCTCCCATTGATTGTTTGATTGATTATATTGTA
TTTAAAAAAATTACTAATTGAATAAGAAAAGAATTACGANTTGATTGATT
ATATTGTATTTAAAAAAATTACTAATTGAATAAGAAAAGAATTACGAATC
TCTAGTTCATTTCTCCACCCCCATCGATGTGTTTACCCTCTCCAGACTCC
CCTCCCTACATTTAATCGATTACACGTTTTTTTTTTTTAAGAAACACACT
TTTAAGAAACATGAGGCTCAGAATGCCTAAAAACTAAGAAACATCTAAGA
AACATGCTGAGGCTGAGAATGAGAAAATAACTATTTTAATTCGGTTTTTC
TTAAGAACCTTCCAATTCAGCCTGCAATGAGGCTGATTATGTCAAAAAGT
TTAAAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCGATTTCTTAAGA
AACATTGAGGCTGCTTGGTAAAACNCCCGGTGGCCCCCCCCCCCCACCCC
GCTGAATAAATAGGCCAAAAAATCGTCCCCGTTAGAAAACACATCCTACA
ATTTCAACCCCACTACGAAATTGCTCTATGATTTTATCCCCATTGAAAAC
TGAATGTAAAAAATTGCACTCCAAAATCATCCCCACTGGAATTTTTGAAC
TGGAAAAAATAGATTTAATTTCTATCCCCATTGGCATTTTAATAGAAATT
TTCATCCCCACTGAGGGAAAAAGTTCTACCGGGGCACTGAGACAGGGGTG
TGGTAGTGTAATCTAAAAAGAAAGTAAAAACGAAAAAAAGTTCTTAGCAA
ACCTCCCTAAATGGGTTTTCCCTCTGAAAAATATTGAAATTGGCGAGGGT
GGGAAGGGGAGTAACGCTTAGCATCAAAGATGTATCCAAAATTGGTAACC
TGATAACAGATGTTCATAATTTTCTTACGCGCACGGTAAACCTCTAAAGG
CGCTTGAAAATTATACATCTGAGGAAAATAGTCCTCCCGCGGAAAATTCT
ACAACAAGAATCTTGTTGTGCGCCGGAAAAATAAAAACTTATACGGCGCC
CTATTCATTAAGACAATCGCGCAATTTTGTTGTCATTCCCAGTCCTTTTA
GACGAACGCGGTCCTTACGATTTCGAGATTGCATATTCGTCAGATTGTTT
GTTTTCACACATCCCTTTAGAGCTTCAGCGTGGTGTGCAGAAAACATTCA
CAATCTGATCTCAGGTTAAAAATTGGTGAATTACAAAATGCATAATGCAT
AAAAGAAGCATAAGGGAGTGAATTAGCATTGGTTTTATTTTGTATTTTAG
AAATGTAAAACGTGCTTGGTCGAGGTCGAGGCCACCAGGAACAGACAACT
TCGTTGCCCGAACGGGCACGAATTTGAAAAAAAAACCAAGCCAGTCGAGG
CAGCTACTGGGATGAAGACCATCACCCAAACAAATCGTGATTGGGAGAAG
AGTGTAAATATTTTTTTCTTGTGGATTTTACATTAATTGACTCACCTAAT
AGTGAAAGTTCGATTCACTTTTTTATGGATGAAATTCATTTGAATTAGCT
AATTTACTTAGCTCATTTTGTTAAAAGAACACCTGAAGAAAGGCTCCCTG
CATGGAAACTGTTAAAAAATAAAAGCTTCAAGCTACATTCTACCTTCATT
TAATTTATTTCATTAGATCAAAACTCTCAACGAACAACACCACTGGCACA
TCGTCACCATCAAGGCCAAGAGGCATCAAAACAGTGTCGAGTTCCAGTAT
CTTGGTACCCCTGGCGTTGCCAAAAACTTCATCAACGATGAAAAGATTGG
TGCTGCTATCAAGGGCGCTTTTGAGCCTCGTTTTAAAAGAGGTAGGGAAT
TGTTCATTTGCATTACTACATAAGGTAGGCTCAATTAACTCGTTGTTGCA
GATTTATCGTTAGACAATTATGAATCGTAGAATTTAAAATGAACTTTTCA
TAATTTAAATTCGGTATTTTCGATGTTAGGCCGAAACTTGTGAGTGCCAC
AGCTCGTCACAATGTCTGCTATTCTACCCACACCCTTGTATCAGAATAAT
ATTAGCCAATCCCTCTCACATGCCATGCGTTGACCTAGGCAAAGGTACAT
TTACTTGCAAAGAACATGATAACCACTATACTACTAATCGCTATGTAAAA
CTTCTTGTAGTGGAAGTTCAATATTATTTTTTTCTCATCAGCTTGTTATA
TTGCTTCTGTTACATGTCGTTATTATATTTTAGAAGTCAAAGAATTCAAG
CCATCGTTAGGGCAAAAGCCACCCCGTGACGAATCTTCAACAACCCAGTC
TTCAACAACCCAGTCTTCAACAGCCCAGTCTTCAACAACCCN

Coding sequence (CDS) from alignment at sc0002251:2701..7942-

>TCONS_00039945 ID=TCONS_00039945|Name=TCONS_00039945|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0002251:2701..7942- (Clytia hemisphaerica)
AAGTCAAAGAATTCAAGCCATCGTTAGGGCAAAAGCCACCCCGTGACGAA
TCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAACAGCCCAGTCTTC
AACAACCATCAAAACTCTCAACGAACAACACCACTGGCACATCGTCACCA
TCAAGGCCAAGAGGCATCAAAACAGTGTCGAGTTCCAGTATCTTGGTACC
CCTGGCGTTGCCAAAAACTTCATCAACGATGAAAAGATTGGTGCTGCTAT
CAAGGGCGCTTTTGAGCCTCGTTTTAAAAGAGAAATGTAAAACGTGCTTG
GTCGAGGTCGAGGCCACCAGGAACAGACAACTTCGTTGCCCGAACGGGCA
CGAATTTGAAAAAAAAACCAAGCCAGTCGAGGCAGCTACTGGGATGAAGA
CCATCACCCAAACAAATCGTGATTGGGAGAAGAGTATGAAGAATATCGAT
TATGGAAAAAAAAGAGTCAAGAAGTCAAAGAATTCAAGCCATCGTTAGGG
CAAAAGCCACCCCGTGACGAATCTTCAACAACCCAGTCTTCAACAACCCA
GTCTTCAACAGCCCAGTCTTCAACAACCATCAAAACTCTCAACGAACAAC
ACCACTGGCACATCGTCACCATCAAGGCCAAGAGGCATCAAAACAGTGTC
GAGTTCCAGTATCTTGGTACCCCTGGCGTTGCCAAAAACTTCATCAACGA
TGAAAAGATTGGTGCTGCTATCAAGGGCGCTTTTGAGCCTCGTTTTAAAA
GAGAAATGTAAAACGTGCTTGGTCGAGGTCGAGGCCACCAGGAACAGACA
ACTTCGTTGCCCGAACGGGCACGAATTTGAAAAAAAAACCAAGCCAGTCG
AGGCAGCTACTGGGATGAAGACCATCACCCAAACAAATCGTGATTGGGAG
AAGAGTATGAAGAATATCGATTATGGAAAAAAAAGAGTCAAGAAGTCAAA
GAATTCAAGCCATCGTTAGGGCAAAAGCCACCCCGTGACGAATCTTCAAC
AACCCAGTCTTCAACAACCCAGTCTTCAACAGCCCAGTCTTCAACAACCA
TCAAAACTCTCAACGAACAACACCACTGGCACATCGTCACCATCAAGGCC
AAGAGGCATCAAAACAGTGTCGAGTTCCAGTATCTTGGTACCCCTGGCGT
TGCCAAAAACTTCATCAACGATGAAAAGATTGGTGCTGCTATCAAGGGCG
CTTTTGAGCCTCGTTTTAAAAGAGAAATGTAAAACGTGCTTGGTCGAGGT
CGAGGCCACCAGGAACAGACAACTTCGTTGCCCGAACGGGCACGAATTTG
AAAAAAAAACCAAGCCAGTCGAGGCAGCTACTGGGATGAAGACCATCACC
CAAACAAATCGTGATTGGGAGAAGAGTATGAAGAATATCGATTATGGAAA
AAAAAGAGTCAAGAAGTCAAAGAATTCAAGCCATCGTTAGGGCAAAAGCC
ACCCCGTGACGAATCTTCAACAACCCAGTCTTCAACAACCCAGTCTTCAA
CAGCCCAGTCTTCAACAACCATCAAAACTCTCAACGAACAACACCACTGG
CACATCGTCACCATCAAGGCCAAGAGGCATCAAAACAGTGTCGAGTTCCA
GTATCTTGGTACCCCTGGCGTTGCCAAAAACTTCATCAACGATGAAAAGA
TTGGTGCTGCTATCAAGGGCGCTTTTGAGCCTCGTTTTAAAAGAGAAATG
TAAAACGTGCTTGGTCGAGGTCGAGGCCACCAGGAACAGACAACTTCGTT
GCCCGAACGGGCACGAATTTGAAAAAAAAACCAAGCCAGTCGAGGCAGCT
ACTGGGATGAAGACCATCACCCAAACAAATCGTGATTGGGAGAAGAGTAT
GAAGAATATCGATTATGGAAAAAAAAGAGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024189XLOC_024189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039945-exon-sc0002251-1575043694:7918..7942TCONS_00039945-exon-sc0002251-1575043694:7918..7942Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1575043694:7444..7601TCONS_00039945-exon-sc0002251-1575043694:7444..7601Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1575043694:7071..7135TCONS_00039945-exon-sc0002251-1575043694:7071..7135Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1575043694:3590..3742TCONS_00039945-exon-sc0002251-1575043694:3590..3742Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1575043694:3202..3376TCONS_00039945-exon-sc0002251-1575043694:3202..3376Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1575043694:2701..2809TCONS_00039945-exon-sc0002251-1575043694:2701..2809Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1510915933:7918..7942TCONS_00039945-exon-sc0002251-1510915933:7918..7942Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1510915933:7444..7601TCONS_00039945-exon-sc0002251-1510915933:7444..7601Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1510915933:7071..7135TCONS_00039945-exon-sc0002251-1510915933:7071..7135Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1510915933:3590..3742TCONS_00039945-exon-sc0002251-1510915933:3590..3742Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1510915933:3202..3376TCONS_00039945-exon-sc0002251-1510915933:3202..3376Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1510915933:2701..2809TCONS_00039945-exon-sc0002251-1510915933:2701..2809Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1491911889:7918..7942TCONS_00039945-exon-sc0002251-1491911889:7918..7942Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1491911889:7444..7601TCONS_00039945-exon-sc0002251-1491911889:7444..7601Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1491911889:7071..7135TCONS_00039945-exon-sc0002251-1491911889:7071..7135Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1491911889:3590..3742TCONS_00039945-exon-sc0002251-1491911889:3590..3742Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1491911889:3202..3376TCONS_00039945-exon-sc0002251-1491911889:3202..3376Clytia hemisphaericaexon
TCONS_00039945-exon-sc0002251-1491911889:2701..2809TCONS_00039945-exon-sc0002251-1491911889:2701..2809Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039945-proteinTCONS_00039945-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002251supercontigsc0002251:2701..7942 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149066	0	0	0	4.71236	3.96385	3.5584	3.04475	1.22757	0.686962	0	1.66599	1.95071	1.50961	0.108642	0	0	0.516138	0	0	0	0	0	0	1.3056	2.2724	0	0	0.0827259	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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