TCONS_00039937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039937
Unique NameTCONS_00039937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039937 ID=TCONS_00039937|Name=TCONS_00039937|organism=Clytia hemisphaerica|type=transcript|length=1698bp
TGATGTACCTAGATGTTTTGATTACCCTGATTTTTGTTTCACCAACTCAA
CGCCAAATGAAATGCTTAAAAAGATTTGGAATACTGACGAAGCAGCCGTT
GGGATCATCATCTGTTGTATTGACAGGTTTTACATAACAGATGGGGACTT
GAAAACGTTAAAATCTGGAAAGCAATTGAATGACCAAGTTATTGATGCAT
ATATTTGCCAATTGACAAAGAACTTGCCAGTTGAAGACGGAATTCAACAC
ATTCAGTCCCACAAACTTACAAAACTTTTCAATAAAGGCACGATCACATT
CGGTGTGAAAGAAAAGAAAAGCTTACAAAGTTCCAAGATGATAGTGGGTG
CATTTAATATCAATAGTCATTGGATGTTTTTGGTGATTTACCCGGCTTTA
AAAGAAGTCAAACTGTACAATTCGTTGGGTTTGGGACATTCCGCTGGTGT
TGAAACGGATATTCTACAAAAATGGAGGGTTGCTTGCAAAATACTTGACT
TGGACGGGAGCTGGAAGATTTCTTCTCAAATCAGTGCTATGCAAGAAGAC
ACAGTATCTCGTGGTGCATTCTGCCTTAGCTTTGCAGAAAGTGTTGTCCT
TGGGGAGCCTGTCAAGAAAGCGTTGTCGAAGAGAAATGTGGCAGACTTTA
GATTAAAAATCGGACATGCTATCATCGAGAAATCAGGAGGTGGGTTATGG
TGTCACAAGACATGTAGGATATGCAGAGCAGACAAGCAAGAAAACTTGGT
TCGATGCTTGAAGTGCATTCCTGAAAGGTATTATCATAAGAAGTGTCTTA
TCAAGACAAGAGAAAGACTTGCTAAAGCCAGAGAAAGACTCGTTACCGCA
CAGGAGATGCAATCATTAAAGGAAGGGGAAGTTTTGTTGCGGAAACGCAT
AGACTTGAAGGTGAAGGTGTGTCATGGGTGCAACGGATCCATTGCTAGTG
GGTGGTCCACCGCACGATATTTGCATCGCACGTAAAGAGAAGAGGAAGAA
GTCTGGCTTAACCAACTCTAATTCCTTCGTTCTGACAAATGTTCATTATC
ACCCTAGACGCTCCTGTATAAATGTCAATCCATCTTTCTTGAAAATATCG
AAGGCTATAAAACTTGACCAGACCTATACAacttttttgaaggaaaatgg
taTCTTTGGCtagtagtagggggaaattttttttttttaagtcgcTCGAT
TATGTTTTGGTCAAAgaacttgttatacattttttgaaagctaacgggta
ggggaatcaaaatagcttagattccaattttttttttcggacactttggt
atgattttcggacaaatacgacggtctcaggcaaaaatcatagggtcaaa
aattaatgaaaattctAGCTtaagaaaacggagacctgttgtatattttt
gaaaatctctcaaaaaattaagatcagaggtatattgcgagtataggtga
ttttaGTACCTAGCTCGAGAGAtcgagcttcaaaaagcgcaaaaactgga
caagacaactgtttctggctgaaagacactgtttttaagggtttCTTTTC
TGACTAATACAATCGAGCGACTTTACAAAATACCCTCTACTATAGTGTTg
ttattaagggctctgaccatagtgaatttttaatatttgccacttacaaa
atataaagttctacttgatgtagcccacaaaactgtggcatgttatAC
Run BLAST on NCBI

transcript from alignment at sc0002248:687..4467+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039937 ID=TCONS_00039937|Name=TCONS_00039937|organism=Clytia hemisphaerica|type=transcript|length=3781bp|location=Sequence derived from alignment at sc0002248:687..4467+ (Clytia hemisphaerica)
TGATGTACCTAGATGTTTTGGTAGGTCTTTTTCGtctaaaaaagttgatt
ttgttcTATACTAAATCCCTATTCCAATAAGGTAAATGCGTGTGATCACG
ATTTTGGGTACTGCTAATGCAGATCTGTATTTCAATATTCTCTTGTTTTT
TAGATTACCCTGATTTTTGTTTCACCAACTCAACGCCAAATGAAAGTAAg
atgattttgttttgaagtaTTTTTGAACTATATCTGTTGTAgaatttttt
tggggggagtTGGTAAGGGTGATTATTGGTGGgcttttttcaaataaact
cAATTTGGAAACTCTTCTTGCTAAACTATTGTATCGTTTTTAGTGCTTAA
AAAGATTTGGAATACTGACGAAGCAGCCGTTGGGATCATCATCTGTTGTA
TTGACAGGTTTTACATAACAGATGGGGACTTGAAAACGTTAAAATCTGGA
AAGCAATTGAATGACCAAGTTATTGATGCATATATTTGCCAATTGACAAA
GAACTTGGTATTATTTAAATACTGATAATTGTTTCTCCTCTTGACCTTTT
CGATTGTCTTCGTTGTTCATTAGCTCATTGTAGATTTATAAATGGACAGT
TGTGATTTGTTTATGCTTTAACTTGCTTTTATTTTTGTTTCAGCCAGTTG
AAGACGGAATTCAACACATTCAGTCCCACAAACTTACAAAACTTTTCAAT
AAAGGCACGATCACATTCGGTGTGAAAGAAAAGGTTTCTATATTTCAAGC
TATTTCAAAATACTGAAAGCAACAAAATTATCATTATTGTTCACTTTTTG
GCAAATATGCCACACTGATACCATTAATTTTTGTTTTCTGAAAACCAACT
ACCCATTATTACCATTTTGCCATTAATTAATATTTTAGTCTGATCGATTT
TATCACCCTTGTACCTTTTATGTTTTCTCTACGTGCGTAATAATGGTTTA
TTGTCTTCAACCTTTGTACAGAAAAGCTTACAAAGTTCCAAGATGATAGT
GGGTGCATTTAATATCAATAGTCATTGGATGTTTTTGGTATGTTCTATTT
TCTCAATTTTAATTTCTCCTTTACAGCCTGCCAAATTGTACTACCGAGAG
GAACGAATTTGTTATTTTTAAATTGCTTCGTTTTTAAACTTGTAGTCTCT
ACTGAGTTCGGTCCAGTGAGAACCAAAACAAAAAAAGTTCACAAGCGAAA
AATGACTCTGCGAATTTCTTTGTAAGTTATAATATCCAGAAAAAAACAAT
TCATGATAAACGAAAATCAAAATCCGCTCTTTGAACTTTTTATACGATTT
ACATAGGTGATTTACCCGGCTTTAAAAGAAGTCAAACTGTACAATTCGTT
GGGTTTGGGACATTCCGCTGGTGTTGAAACGGATATTCTACAAAAATGGA
GGTAACCTTTTTTTTACTAAGTAAATATCTTTCTCTTTAGATGCTCAAAA
TACGCACTATAACTCGTGAAGTAATCAATTTGTAATCATATTTTCAATAT
TTTTTATTCTGTACTGGCTTTAACCTTTTTCATTGAAATTTTAGGGTTGC
TTGCAAAATACTTGACTTGGACGGGAGCTGGAAGATTTCTTCTCAAATCA
GTGCTATGCAAGAAGACACAGTATCTCGTGGTGCATTCTGCCTTAGCGTA
TGTTATAGATTTTTTAAAGTTTTTTTTCTATATGGAAGACCATTGTGAAT
AATAAATTAGGCGAAAAGTTGAATTTACAGTTTTGAAGAAATAGTATTGC
AATATTTCTACCTATCGGTAGTATCCCTTTGAGTGTTATATATTCACACG
CTTTTGATAAGAATATACTTTATGAGAATATTCATGATGAAATTGGCTAA
AAAGTTGAGAATGTCCAAAGAAAAAATTAAGAATATTTATGATGAAATGT
AACCACATTCTTATAAAAAAGTGCATTCAGCGTGTCCGAAAAAAAGTGGA
ACAGAATTTGTGTAAAGAAAAATTCTAATGATTTTTAACCCTACAGTAAt
aaactttccttttttttttacttatcgAAAAAGAACTTAATTACCCGGTA
AaaccattttgagaattttcttcCATTAGAccatgagcatttttatttac
aCCATTATTTTTAGTTTGCAGAAAGTGTTGTCCTTGGGGAGCCTGTCAAG
AAAGCGTTGTCGAAGAGAAATGTGGCAGACTTTAGATTAAAAATCGGACA
TGCTATCATCGAGAAATCAGGTAAGAATAAGTGTCAAACTTCTTCATACA
TTTTACGGATATACtttttgatttatcaaaaatgatagtacttttttatt
tataaaaaatactGTATTACTTTATCTTTTTAGGAGGTGGGTTATGGTGT
CACAAGACATGTAGGATATGCAGAGCAGACAAGCAAGAAAACTTGGTATc
ctggatttcatttttctatACTTTCCAAATTTCTAAACCTATAACTAACA
AATCAAATCTTGGCCTGTAAGAGGTGAAACCCTactgataaaaatatttt
tcataggTAAAGAAATTCTGTTTTTCGTCATTTTTATAGATCCCATCCTG
AACAAAATATTTATGTACTGCACACAAATCAACGTAAAATTCGTAAGCTT
TTCCCCCACTTAGGTTCGATGCTTGAAGTGCATTCCTGAAAGGTATTATC
ATAAGAAGTGTCTTATCAAGACAAGAGAAAGACTTGCTAAAGCCAGAGAA
AGACTCGTTGTAAGTGTGCTTGATCTCCTAATTTCTAGTACCTTATAGTC
TGGAATAAGCGGGATGGGTGGAAAATGTTTCAAAATGTTATAGTAGAGAG
GTTTTGGGGGATTATGGCAGAGGGGAGTTGGATGGGTTTCTAAAGATGTA
TGAGTACTAAAATAACTTCAGTGTGCTTGGTTTCAAAATACATTTATATC
AAATTACCATTATATTCCTTCTTTCAGACCGCACAGGAGATGCAATCATT
AAAGGAAGGGGAAGTTTTGTTGCGGAAACGCATAGACTTGAAGGTGAAGG
TGTGTCATGGGTGCAACGGATCCATTGCTAGTGGGTGGTCCACCGCACGA
TATTTGCATCGCACGTAAAGAGAAGAGGAAGAAGTCTGGCTTAACCAACT
CTAATTCCTTCGTTCTGACAAATGTTCATTATCACCCTAGACGCTCCTGT
ATAAATGTCAATCCATCTTTCTTGAAAATATCGAAGGCTATAAAACTTGA
CCAGACCTATACAacttttttgaaggaaaatggtaTCTTTGGCtagtagt
agggggaaattttttttttttaagtcgcTCGATTATGTTTTGGTCAAAga
acttgttatacattttttgaaagctaacgggtaggggaatcaaaatagct
tagattccaattttttttttcggacactttggtatgattttcggacaaat
acgacggtctcaggcaaaaatcatagggtcaaaaattaatgaaaattctA
GCTtaagaaaacggagacctgttgtatatttttgaaaatctctcaaaaaa
ttaagatcagaggtatattgcgagtataggtgattttaGTACCTAGCTCG
AGAGAtcgagcttcaaaaagcgcaaaaactggacaagacaactgtttctg
gctgaaagacactgtttttaagggtttCTTTTCTGACTAATACAATCGAG
CGACTTTACAAAATACCCTCTACTATAGTGTTgttattaagggctctgac
catagtgaatttttaatatttgccacttacaaaatataaagttctacttg
atgtagcccacaaaactgtggcatgttatAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024186XLOC_024186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039937-exon-sc0002248-1491911889:687..706TCONS_00039937-exon-sc0002248-1491911889:687..706Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:687..706TCONS_00039937-exon-sc0002248-1510915933:687..706Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:687..706TCONS_00039937-exon-sc0002248-1575043694:687..706Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:840..881TCONS_00039937-exon-sc0002248-1491911889:840..881Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:840..881TCONS_00039937-exon-sc0002248-1510915933:840..881Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:840..881TCONS_00039937-exon-sc0002248-1575043694:840..881Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:1030..1193TCONS_00039937-exon-sc0002248-1491911889:1030..1193Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:1030..1193TCONS_00039937-exon-sc0002248-1510915933:1030..1193Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:1030..1193TCONS_00039937-exon-sc0002248-1575043694:1030..1193Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:1330..1419TCONS_00039937-exon-sc0002248-1491911889:1330..1419Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:1330..1419TCONS_00039937-exon-sc0002248-1510915933:1330..1419Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:1330..1419TCONS_00039937-exon-sc0002248-1575043694:1330..1419Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:1658..1723TCONS_00039937-exon-sc0002248-1491911889:1658..1723Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:1658..1723TCONS_00039937-exon-sc0002248-1510915933:1658..1723Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:1658..1723TCONS_00039937-exon-sc0002248-1575043694:1658..1723Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:1993..2087TCONS_00039937-exon-sc0002248-1491911889:1993..2087Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:1993..2087TCONS_00039937-exon-sc0002248-1510915933:1993..2087Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:1993..2087TCONS_00039937-exon-sc0002248-1575043694:1993..2087Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:2231..2333TCONS_00039937-exon-sc0002248-1491911889:2231..2333Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:2231..2333TCONS_00039937-exon-sc0002248-1510915933:2231..2333Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:2231..2333TCONS_00039937-exon-sc0002248-1575043694:2231..2333Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:2801..2906TCONS_00039937-exon-sc0002248-1491911889:2801..2906Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:2801..2906TCONS_00039937-exon-sc0002248-1510915933:2801..2906Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:2801..2906TCONS_00039937-exon-sc0002248-1575043694:2801..2906Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:3020..3081TCONS_00039937-exon-sc0002248-1491911889:3020..3081Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:3020..3081TCONS_00039937-exon-sc0002248-1510915933:3020..3081Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:3020..3081TCONS_00039937-exon-sc0002248-1575043694:3020..3081Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:3300..3395TCONS_00039937-exon-sc0002248-1491911889:3300..3395Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:3300..3395TCONS_00039937-exon-sc0002248-1510915933:3300..3395Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:3300..3395TCONS_00039937-exon-sc0002248-1575043694:3300..3395Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1491911889:3614..4467TCONS_00039937-exon-sc0002248-1491911889:3614..4467Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1510915933:3614..4467TCONS_00039937-exon-sc0002248-1510915933:3614..4467Clytia hemisphaericaexon
TCONS_00039937-exon-sc0002248-1575043694:3614..4467TCONS_00039937-exon-sc0002248-1575043694:3614..4467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002248supercontigsc0002248:687..4467 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0970028	0.139908	0.461255	0.186566	6.72749	3.94505	6.20706	5.52459	2.9856	4.18012	3.25064	2.14968	2.97193	4.61941	0	0.221122	0.850645	0.402116	0.234686	0.245874	0.851025	0.31149	0.496108	0.253905	0.817546	2.97893	0.361955	0	0	1.15725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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