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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039930 ID=TCONS_00039930|Name=TCONS_00039930|organism=Clytia hemisphaerica|type=transcript|length=567bp
GGTCAAGCAAACCGAGTAGCTAATCAGCAATAAAATGAAGGTTTCTCCTG
ACATGGCATTGTTAACATATCTCGCATTCCTGCTACCGTTTGCCAAATGT
GGCAGCCATTACTTTTTCACAGATAACTTCGCTGTTGCCAGCTGGATTAA
AACAGACGGCGTCATATTTAAAGGAAGCAGACTATTGACAGGAGGTGGTA
TGATGGAGAACGTCGAAGACTGCCGATGGTTATGTTTAAAGAACACCGCC
TGCAATTCCTTCAACATCTTACCAGTTGAtgacatttcaatattttgtga
ACTGACAGAATATTTTTATGACGACACCGACCAGCAGAAGGAAGCAAAGA
TTGGAGCATACAATTTCAGTCTGGCTggAAGAAGaccatcaaaataaaga
agaaaataaaaatgaaaagtgaaaatctaGTCAACTTGGAATTATTATGC
CCGCACTTAACTTATAATCCAAACTTTTAATAAATATCTGCACAAAATGT
TTATCTAAAATGTTAAACCATTTTAAAACTTTGCAAATAGTAGAATTATC
ATGCACATAAATCGATG Run BLAST on NCBI protein sequence of TCONS_00039930-protein >TCONS_00039930-protein ID=TCONS_00039930-protein|Name=TCONS_00039930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MKVSPDMALLTYLAFLLPFAKCGSHYFFTDNFAVASWIKTDGVIFKGSRL
LTGGGMMENVEDCRWLCLKNTACNSFNILPVDDISIFCELTEYFYDDTDQ
QKEAKIGAYNFSLAGRRPSK Run BLAST on NCBI transcript from alignment at sc0002247:23701..25509- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039930 ID=TCONS_00039930|Name=TCONS_00039930|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at sc0002247:23701..25509- (Clytia hemisphaerica)
GGTCAAGCAAACCGAGTAGCTAATCAGCAATAAAATGAAGGTTTCTCCTG
ACATGGCATTGTTAACATATCTCGCATTCCTGCTACCGTTTGCCAAATGT
GGCAGCCATTACTTTTTCACAGATAACTTCGCTGTTGCCAGCTGGATTAA
AACAGACGGCGTCATATTTAAAGGTAAAATAATCTTTTATTTTCTCACTG
GAACATTTGACAATACAGTGTCAAAAGAATCACCTGGCGTTACGAGATTG
TGTAAATCCGAGCGCCACGGACACTCTTTGGGAAATCTTGAAATTTTCCC
AACTTTGAGTTTCCACAAGTGCTATGTCATTACCCGTAGCGTACTAGCGG
CCCTCCAAGCTATGGCTCACAAGGAGTGGCTCAGTTTCCCATCGGAGAGG
AATAATAGCCGGTATTTGATATAGCGCATTCTGAAAACATTTTCGTTGGA
CGCGAAAATCCCCGAAAACGAAGGCTAAGGTTTAGGCCTCTCGCACGCGG
TCTGGCGAAATTGCGTTATCTAAACCTTCCAGATGTTGAAAATATTCTCA
ACCCTCACAACTTTAACGTGTCAGAAGAAAATTACATCGTGTGCCGTTAC
AGGCATCATGAAAATTGCATGTTTTAATTTTTTTTTAAACCAATAGGAAG
CAGACTATTGACAGGAGGTGGTATGATGGAGAACGTCGAAGACTGCCGAT
GGTTATGTTTAAAGAACACCGCCTGCAATTCCTTCAACATCTTACCAGTT
GATGACATTTCAATATTTTGTGAACTGACAGAATATTTTTATGACGACAC
CGACCAGCAGAAGGAAGCAAAGATTGGAGCATACAATTTCAGTCTGGCTG
TAAGTTCAACATTAAGCGAAATCTATAATTCAGCACAATTGTATTCATGT
AATAGTCTCGACCAAAACCTTTTACACGTTTTTTTTATAAGAACATCCAA
AAGTTTTGAAGCCTTTGCTTATTTTTACCATTTTGTGAATATTTTTTACC
GATTCCCTAAGAAAAAGGGTGTTTTTGAGTTCACAAAGCCTTATGTTCTT
ATATATAGTTTGTTCTTAAAAAAAACGTGTATTTGTTCACTATGAAATAA
AAGCTACATCAGTTTGCAGTTGTACCAGATGGACAGGGCTTTTTCCGAAC
AAAGGTGATAAAAAGTCGTGGTTGGCTAGGATATTGATAACAGACAACTC
TCATTCGACCTTCAAGCGTACAAAAATTATCTCTAAAGAATTTCAGAGAA
CATGAATGCATGAGACCACACATGTTTTAATCTGATATTACGATGGTGGA
TTGGCGGCCGCCCACGCTGAAGCTTGCTATAAGCGCGGGTCAATTTCCCA
CTGGAGAGAAAATGAAGAATGATAGTCGGCCTTTGATGTGCCACATCCCT
AGTTGGGCTTGGATTCAGGCCTCTCACTGCAAAATCCATGACGCGATTTG
GCAAAATTCCGTAATTTAAACCTTCCAGACGTTGGAAGTTTCCCCGCCTT
TCAAAGCTTTAACACACCGGAAGAAAATTTTACATTGAGTGTCAGATAAC
CAATGTCATTATATTTTGATATCAAGAATTCCTCTCATCCAACCATTATT
TTTCTTTTGTTTTTTTAGGGAAGAAGACCATCAAAATAAAGAAGAAAATA
AAAATGAAAAGTGAAAATCTAGTCAACTTGGAATTATTATGCCCGCACTT
AACTTATAATCCAAACTTTTAATAAATATCTGCACAAAATGTTTATCTAA
AATGTTAAACCATTTTAAAACTTTGCAAATAGTAGAATTATCATGCACAT
AAATCGATG Coding sequence (CDS) from alignment at sc0002247:23701..25509- >TCONS_00039930 ID=TCONS_00039930|Name=TCONS_00039930|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at sc0002247:23701..25509- (Clytia hemisphaerica)
GGAAGAAGACCATCAAAATAAGAAGCAGACTATTGACAGGAGGTGGTATG
ATGGAGAACGTCGAAGACTGCCGATGGTTATGTTTAAAGAACACCGCCTG
CAATTCCTTCAACATCTTACCAGTTGATGACATTTCAATATTTTGTGAAC
TGACAGAATATTTTTATGACGACACCGACCAGCAGAAGGAAGCAAAGATT
GGAGCATACAATTTCAGTCTGGCTATGAAGGTTTCTCCTGACATGGCATT
GTTAACATATCTCGCATTCCTGCTACCGTTTGCCAAATGTGGCAGCCATT
ACTTTTTCACAGATAACTTCGCTGTTGCCAGCTGGATTAAAACAGACGGC
GTCATATTTAAAGGGAAGAAGACCATCAAAATAAGAAGCAGACTATTGAC
AGGAGGTGGTATGATGGAGAACGTCGAAGACTGCCGATGGTTATGTTTAA
AGAACACCGCCTGCAATTCCTTCAACATCTTACCAGTTGATGACATTTCA
ATATTTTGTGAACTGACAGAATATTTTTATGACGACACCGACCAGCAGAA
GGAAGCAAAGATTGGAGCATACAATTTCAGTCTGGCTATGAAGGTTTCTC
CTGACATGGCATTGTTAACATATCTCGCATTCCTGCTACCGTTTGCCAAA
TGTGGCAGCCATTACTTTTTCACAGATAACTTCGCTGTTGCCAGCTGGAT
TAAAACAGACGGCGTCATATTTAAAGGGAAGAAGACCATCAAAATAAGAA
GCAGACTATTGACAGGAGGTGGTATGATGGAGAACGTCGAAGACTGCCGA
TGGTTATGTTTAAAGAACACCGCCTGCAATTCCTTCAACATCTTACCAGT
TGATGACATTTCAATATTTTGTGAACTGACAGAATATTTTTATGACGACA
CCGACCAGCAGAAGGAAGCAAAGATTGGAGCATACAATTTCAGTCTGGCT
ATGAAGGTTTCTCCTGACATGGCATTGTTAACATATCTCGCATTCCTGCT
ACCGTTTGCCAAATGTGGCAGCCATTACTTTTTCACAGATAACTTCGCTG
TTGCCAGCTGGATTAAAACAGACGGCGTCATATTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039930-exon-sc0002247-1575043694:25337..25509 | TCONS_00039930-exon-sc0002247-1575043694:25337..25509 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1575043694:24661..24863 | TCONS_00039930-exon-sc0002247-1575043694:24661..24863 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1575043694:23701..23891 | TCONS_00039930-exon-sc0002247-1575043694:23701..23891 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1510915933:25337..25509 | TCONS_00039930-exon-sc0002247-1510915933:25337..25509 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1510915933:24661..24863 | TCONS_00039930-exon-sc0002247-1510915933:24661..24863 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1510915933:23701..23891 | TCONS_00039930-exon-sc0002247-1510915933:23701..23891 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1491911889:25337..25509 | TCONS_00039930-exon-sc0002247-1491911889:25337..25509 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1491911889:24661..24863 | TCONS_00039930-exon-sc0002247-1491911889:24661..24863 | Clytia hemisphaerica | exon |
| TCONS_00039930-exon-sc0002247-1491911889:23701..23891 | TCONS_00039930-exon-sc0002247-1491911889:23701..23891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002247 | supercontig | sc0002247:23701..25509 - |
Blast
The following BLAST results are available for this feature:
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