TCONS_00039928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039928
Unique NameTCONS_00039928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039928 ID=TCONS_00039928|Name=TCONS_00039928|organism=Clytia hemisphaerica|type=transcript|length=819bp
tataacttaagtttctagcggagggagggactatattaatGTTTAGTAGA
TTTTGTATTATATGTTCGTAATGTACCCTGTGtttatgtttcaataaaga
aaaaaaactaacaaaaaaaaaaaatgttttgaaacatAATTGTATTTTCT
CCCTTCAGATTATCACGTCACCAATCGAATGGTGAAATCCCTCCTTATCA
ACCATTTCGAGGACCAATTGGCGTTCATGTATCCGACAGATAATNAAAAG
AATGTTTTGAAACATAATTGTATTTTCTCCCTTCAGATTATCACGTCACC
AATCGAATGGTGAAATCCCTCCTTATCAACCATTTCGAGGACCAATTGGC
GTTCATGTATCCGACAGATAATAGAAAATCATCAATTTATCAACCGTCCA
AACTTCGGATGTTATTGAGGCTATTCTTACAACGGCTCCCGTCAAAGTGT
GCGTAGAAAAAATAAAGTCTGAATGCCAGTCTTATGATTTTCAACTAAAC
GAAAGCTTCCGTAATGCATCGGACTTAGAAATTGCAATGGAGAGACTGAA
AACCTACCAACAACTTGAAACTTGGGACAAATTTTTCAATGATCTTTTTC
CGACGCGATCTTCTTCCAAACCGATTAAAAGAAAATGTGACGTTATTTTG
TAAATTGTTTTTAACATGGTCAACATAGGACGAAAAAAGACCCCATTACA
CACTGCTATCGCCGAAAGTATACACGATACTTGCAAATCAAAGACTGCAT
TTTTGTCAAGTAATTGATTAACTGATgtcgaggggcaaatcactcgaaaa
atggtgtacgagatttatg
Run BLAST on NCBI

transcript from alignment at sc0002246:13516..14334

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039928 ID=TCONS_00039928|Name=TCONS_00039928|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at sc0002246:13516..14334 (Clytia hemisphaerica)
cataaatctcgtacaccatttttcgagtgatttgcccctcgacATCAGTT
AATCAATTACTTGACAAAAATGCAGTCTTTGATTTGCAAGTATCGTGTAT
ACTTTCGGCGATAGCAGTGTGTAATGGGGTCTTTTTTCGTCCTATGTTGA
CCATGTTAAAAACAATTTACAAAATAACGTCACATTTTCTTTTAATCGGT
TTGGAAGAAGATCGCGTCGGAAAAAGATCATTGAAAAATTTGTCCCAAGT
TTCAAGTTGTTGGTAGGTTTTCAGTCTCTCCATTGCAATTTCTAAGTCCG
ATGCATTACGGAAGCTTTCGTTTAGTTGAAAATCATAAGACTGGCATTCA
GACTTTATTTTTTCTACGCACACTTTGACGGGAGCCGTTGTAAGAATAGC
CTCAATAACATCCGAAGTTTGGACGGTTGATAAATTGATGATTTTCTATT
ATCTGTCGGATACATGAACGCCAATTGGTCCTCGAAATGGTTGATAAGGA
GGGATTTCACCATTCGATTGGTGACGTGATAATCTGAAGGGAGAAAATAC
AATTATGTTTCAAAACATTCTTTTNATTATCTGTCGGATACATGAACGCC
AATTGGTCCTCGAAATGGTTGATAAGGAGGGATTTCACCATTCGATTGGT
GACGTGATAATCTGAAGGGAGAAAATACAATTatgtttcaaaacattttt
tttttttgttagttttttttctttattgaaacataaaCACAGGGTACATT
ACGAACATATAATACAAAATCTACTAAACattaatatagtccctccctcc
gctagaaacttaagttata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024178XLOC_024178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039928-exon-sc0002246-1491911889:13516..14334TCONS_00039928-exon-sc0002246-1491911889:13516..14334Clytia hemisphaericaexon
TCONS_00039928-exon-sc0002246-1510915933:13516..14334TCONS_00039928-exon-sc0002246-1510915933:13516..14334Clytia hemisphaericaexon
TCONS_00039928-exon-sc0002246-1575043694:13516..14334TCONS_00039928-exon-sc0002246-1575043694:13516..14334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002246supercontigsc0002246:13516..14334 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.348961	0.170146	0.460964	0.386555	1.33335	0.853045	2.00379	2.31009	0.392084	0.728489	0.117848	0.464813	0.497955	0.562961	0.396304	0.389853	0.656484	0.358006	0.866457	1.09983	0.640293	0.285901	0	0.183396	0.31222	0.724488	0.614776	0.479461	0.652384	0.460387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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