TCONS_00039899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039899
Unique NameTCONS_00039899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039899 ID=TCONS_00039899|Name=TCONS_00039899|organism=Clytia hemisphaerica|type=transcript|length=397bp
TCGGacaaatcacaaattttgacattccAAATTGCTTATCCCTTTCAAGC
AACACCTTGTCACttgttatccctgcttatcaaactaatcacaaattttg
acattcgaaATTGCTTATCCCTTTCAAGTCACACCGTATCACTCTTTATC
CCTTCTTGTCGGGTAAATcacaatttttgacatttcaaaCTGCTTATCCC
TTTTAAACCACACCTTGTCACTTTTTCCTTCcttatcaaactaatcacaa
attttgacattcaAAATTGCTTATCTCTTTCAAGTCACACCCTATCACTC
TTTATCCCTTCTTGTCGGacaaatcacaaattttgacatttcaaattgCT
TATCTCTTTCAAGTCACACACTATCACTCTTTATCCCTTCTTGTCGG
Run BLAST on NCBI

transcript from alignment at sc0002236:5839..6472+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039899 ID=TCONS_00039899|Name=TCONS_00039899|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0002236:5839..6472+ (Clytia hemisphaerica)
TCGGacaaatcacaaattttgacatttcaaattaaTTATCCCTTTCAAAC
CACACCTTGTCACTTGTTATCCATGCTTATCAAACTAGtcacaaattttg
aaattcgaaattGCTTCTCCCTTTTAAGCCACACCTTGTCACTTGTTATC
CCTACTTATCAAATGAttcacaaattttgacattcgaaATTCCCTATCCC
TTTTAAGCCACACCTTGTCACttgttatccctgcttatcaaactagtcac
aaattttgacattccAAATTGCTTATCCCTTTCAAGCAACACCTTGTCAC
ttgttatccctgcttatcaaactaatcacaaattttgacattcgaaATTG
CTTATCCCTTTCAAGTCACACCGTATCACTCTTTATCCCTTCTTGTCGGG
TAAATcacaatttttgacatttcaaaCTGCTTATCCCTTTTAAACCACAC
CTTGTCACTTTTTCCTTCcttatcaaactaatcacaaattttgacattca
AAATTGCTTATCTCTTTCAAGTCACACCCTATCACTCTTTATCCCTTCTT
GTCGGacaaatcacaaattttgacatttcaaattgCTTATCTCTTTCAAG
TCACACACTATCACTCTTTATCCCTTCTTGTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024150XLOC_024150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039899-exon-sc0002236-1491911889:5839..5861TCONS_00039899-exon-sc0002236-1491911889:5839..5861Clytia hemisphaericaexon
TCONS_00039899-exon-sc0002236-1510915933:5839..5861TCONS_00039899-exon-sc0002236-1510915933:5839..5861Clytia hemisphaericaexon
TCONS_00039899-exon-sc0002236-1575043694:5839..5861TCONS_00039899-exon-sc0002236-1575043694:5839..5861Clytia hemisphaericaexon
TCONS_00039899-exon-sc0002236-1491911889:6099..6472TCONS_00039899-exon-sc0002236-1491911889:6099..6472Clytia hemisphaericaexon
TCONS_00039899-exon-sc0002236-1510915933:6099..6472TCONS_00039899-exon-sc0002236-1510915933:6099..6472Clytia hemisphaericaexon
TCONS_00039899-exon-sc0002236-1575043694:6099..6472TCONS_00039899-exon-sc0002236-1575043694:6099..6472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002236supercontigsc0002236:5839..6472 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.515214	0.0449505	0.82775	0.646542	1.42633	1.85123	0.77885	0.408757	2.62317	1.10777	0	0	0	0	0	0	0	0	0	0	0	0	0	2.65689	0	0	0	0.171523
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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