TCONS_00039898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039898
Unique NameTCONS_00039898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039898 ID=TCONS_00039898|Name=TCONS_00039898|organism=Clytia hemisphaerica|type=transcript|length=1355bp
NAAAGTTACAACAGCCAATGAGAATCGTGAAAAAGAAGCAGAAACCGCTC
ACCccgaaaatgaaaaagaaagtcTGCAAGAACGTGAAGAAATAAAACAA
TTGTCGACCAAACCTATTGAAAAGAATACCAAGTCATCCGAAAAAAGGAC
AAGAAACAAGAAGCACGCCTTTACTACTGAGGAGGACAATTTTCTGTTAA
AAGGTATAAAGAAGTACGGACAAGGAAAATGGTCTAACATCTTGAAAGAC
CCAGAGTATAAATTTCATCCTTCAAGGAAAAATTCTACACTGCTTATGCG
TGCTAAAGCGAAAAAGTTCATTGACTGACAGAATTGGATATAGTtgattt
atgaaaataaaaatggtaaaaCGAAATAATCGAACAAAGATTTGtaggaa
atatttttaaaattaattttttcgttaaaaaattGCTCATCACCTTCAAA
TCACCCCTTCTCACCCGTTGTCACTCATTATCCCTTCTTTTCAAACtaat
cacaaattttgacattcaAAATTGCTTATCCCCATCATGTCACAAcgtgt
cactcgttatcccttcTTGTCGGacaaatcacaaattttgacatttcaaa
ttaaTTATCCCTTTCAAACCACACCTTGTCACTTGTTATCCATGCTTATC
AAACTAGtcacaaattttgaaattcgaaattGCTTCTCCCTTTTAAGCCA
CACCTTGTCACTTGTTATCCCTACTTATCAAATGAttcacaaattttgac
attcgaaATTCCCTATCCCTTTTAAGCCACACCTTGTCACttgttatccc
tgcttatcaaactagtcacaaattttgacattccAAATTGCTTATCCCTT
TCAAGCAACACCTTGTCACttgttatccctgcttatcaaactaatcacaa
attttgacattcgaaATTGCTTATCCCTTTCAAGTCACACCGTATCACTC
TTTATCCCTTCTTGTCGGGTAAATcacaatttttgacatttcaaaCTGCT
TATCCCTTTTAAACCACACCTTGTCACTTTTTCCTTCcttatcaaactaa
tcacaaattttgacattcaAAATTGCTTATCTCTTTCAAGTCACACCCTA
TCACTCTTTATCCCTTCTTGTCGGacaaatcacaaattttgacatttcaa
attgCTTATCTCTTTCAAGTCACACACTATCACTCTTTATCCCTTCTTGT
CGGacaaatcacaaattttgacatttcaaattgCTTATCTCTTTTCAAGT
CACACCCTATCACTCTTTATCCGTTCTTGTCGGacaaatcacaaattttg
acatttcaaattgCTTATCTCTTTCAAGTCACACCCTATCACTCTTTATC
CCTTC
Run BLAST on NCBI

protein sequence of TCONS_00039898-protein

>TCONS_00039898-protein ID=TCONS_00039898-protein|Name=TCONS_00039898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
KVTTANENREKEAETAHPENEKESLQEREEIKQLSTKPIEKNTKSSEKRT
RNKKHAFTTEEDNFLLKGIKKYGQGKWSNILKDPEYKFHPSRKNSTLLMR
AKAKKFID
Run BLAST on NCBI

transcript from alignment at sc0002236:5270..6624+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039898 ID=TCONS_00039898|Name=TCONS_00039898|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at sc0002236:5270..6624+ (Clytia hemisphaerica)
NAAAGTTACAACAGCCAATGAGAATCGTGAAAAAGAAGCAGAAACCGCTC
ACCccgaaaatgaaaaagaaagtcTGCAAGAACGTGAAGAAATAAAACAA
TTGTCGACCAAACCTATTGAAAAGAATACCAAGTCATCCGAAAAAAGGAC
AAGAAACAAGAAGCACGCCTTTACTACTGAGGAGGACAATTTTCTGTTAA
AAGGTATAAAGAAGTACGGACAAGGAAAATGGTCTAACATCTTGAAAGAC
CCAGAGTATAAATTTCATCCTTCAAGGAAAAATTCTACACTGCTTATGCG
TGCTAAAGCGAAAAAGTTCATTGACTGACAGAATTGGATATAGTtgattt
atgaaaataaaaatggtaaaaCGAAATAATCGAACAAAGATTTGtaggaa
atatttttaaaattaattttttcgttaaaaaattGCTCATCACCTTCAAA
TCACCCCTTCTCACCCGTTGTCACTCATTATCCCTTCTTTTCAAACtaat
cacaaattttgacattcaAAATTGCTTATCCCCATCATGTCACAAcgtgt
cactcgttatcccttcTTGTCGGacaaatcacaaattttgacatttcaaa
ttaaTTATCCCTTTCAAACCACACCTTGTCACTTGTTATCCATGCTTATC
AAACTAGtcacaaattttgaaattcgaaattGCTTCTCCCTTTTAAGCCA
CACCTTGTCACTTGTTATCCCTACTTATCAAATGAttcacaaattttgac
attcgaaATTCCCTATCCCTTTTAAGCCACACCTTGTCACttgttatccc
tgcttatcaaactagtcacaaattttgacattccAAATTGCTTATCCCTT
TCAAGCAACACCTTGTCACttgttatccctgcttatcaaactaatcacaa
attttgacattcgaaATTGCTTATCCCTTTCAAGTCACACCGTATCACTC
TTTATCCCTTCTTGTCGGGTAAATcacaatttttgacatttcaaaCTGCT
TATCCCTTTTAAACCACACCTTGTCACTTTTTCCTTCcttatcaaactaa
tcacaaattttgacattcaAAATTGCTTATCTCTTTCAAGTCACACCCTA
TCACTCTTTATCCCTTCTTGTCGGacaaatcacaaattttgacatttcaa
attgCTTATCTCTTTCAAGTCACACACTATCACTCTTTATCCCTTCTTGT
CGGacaaatcacaaattttgacatttcaaattgCTTATCTCTTTTCAAGT
CACACCCTATCACTCTTTATCCGTTCTTGTCGGacaaatcacaaattttg
acatttcaaattgCTTATCTCTTTCAAGTCACACCCTATCACTCTTTATC
CCTTC

Coding sequence (CDS) from alignment at sc0002236:5270..6624+

>TCONS_00039898 ID=TCONS_00039898|Name=TCONS_00039898|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0002236:5270..6624+ (Clytia hemisphaerica)
AAAGTTACAACAGCCAATGAGAATCGTGAAAAAGAAGCAGAAACCGCTCA
CCccgaaaatgaaaaagaaagtcTGCAAGAACGTGAAGAAATAAAACAAT
TGTCGACCAAACCTATTGAAAAGAATACCAAGTCATCCGAAAAAAGGACA
AGAAACAAGAAGCACGCCTTTACTACTGAGGAGGACAATTTTCTGTTAAA
AGGTATAAAGAAGTACGGACAAGGAAAATGGTCTAACATCTTGAAAGACC
CAGAGTATAAATTTCATCCTTCAAGGAAAAATTCTACACTGCTTATGCGT
GCTAAAGCGAAAAAGTTCATTGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024150XLOC_024150Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039898-proteinTCONS_00039898-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039898-exon-sc0002236-1491911889:5270..6624TCONS_00039898-exon-sc0002236-1491911889:5270..6624Clytia hemisphaericaexon
TCONS_00039898-exon-sc0002236-1510915933:5270..6624TCONS_00039898-exon-sc0002236-1510915933:5270..6624Clytia hemisphaericaexon
TCONS_00039898-exon-sc0002236-1575043694:5270..6624TCONS_00039898-exon-sc0002236-1575043694:5270..6624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002236supercontigsc0002236:5270..6624 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.804905	1.50944	0.125792	0.164091	0.699178	0.157857	0.999851	1.78295	0.811385	0.773101	1.20062	1.40584	0.22648	0.363494	0	0	0	0	0.131636	0	0	0	0.141983	0.0968123	2.12724	2.76788	0	0	0	0.0418784
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015195SLIDE
IPR009057Homeobox-like
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006338chromatin remodeling
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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