TCONS_00039897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039897
Unique NameTCONS_00039897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039897 ID=TCONS_00039897|Name=TCONS_00039897|organism=Clytia hemisphaerica|type=transcript|length=289bp
CCACGTCTCAGATGCAATTAAAGTATAAGGCCCTaggaataaaaacacaa
aaaaggcaGACTAAGGAGGCAAGATGAgaagtttttgaaagtggtcGAAA
TACACTGATCTAGGTACGAAAGGATATGAGCAACAGTGGAAATAGAATAG
AGACATAAGTGTGCAGTAATGGAAACAGTATATTTCGAAACGTAAACATG
AATGCCGAAAATGTATAATAGAACTTGGGATGACATTGGGGATGCATcaa
gatatatatatataactgAGAGCCTAACCCGTTTTGACG
Run BLAST on NCBI

transcript from alignment at sc0002233:2..290

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039897 ID=TCONS_00039897|Name=TCONS_00039897|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0002233:2..290 (Clytia hemisphaerica)
CGTCAAAACGGGTTAGGCTCTcagttatatatatatatcttgATGCATCC
CCAATGTCATCCCAAGTTCTATTATACATTTTCGGCATTCATGTTTACGT
TTCGAAATATACTGTTTCCATTACTGCACACTTATGTCTCTATTCTATTT
CCACTGTTGCTCATATCCTTTCGTACCTAGATCAGTGTATTTCgaccact
ttcaaaaacttcTCATCTTGCCTCCTTAGTCtgccttttttgtgttttta
ttcctAGGGCCTTATACTTTAATTGCATCTGAGACGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024149XLOC_024149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039897-exon-sc0002233-1491911889:2..290TCONS_00039897-exon-sc0002233-1491911889:2..290Clytia hemisphaericaexon
TCONS_00039897-exon-sc0002233-1510915933:2..290TCONS_00039897-exon-sc0002233-1510915933:2..290Clytia hemisphaericaexon
TCONS_00039897-exon-sc0002233-1575043694:2..290TCONS_00039897-exon-sc0002233-1575043694:2..290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002233supercontigsc0002233:2..290 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.01679	6.09197	3.34051	4.43563	19.6281	9.46421	8.37466	15.6944	1.9885	0	4.94581	1.60999	3.58652	0	0.0949899	0	0	0	0	0.49233	0	1.88911	1.44619	3.06089	3.90896	16.0529	4.16543	0	0	2.62705
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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