TCONS_00039895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039895
Unique NameTCONS_00039895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039895 ID=TCONS_00039895|Name=TCONS_00039895|organism=Clytia hemisphaerica|type=transcript|length=274bp
NTCCTGTTGATGAATGTACACTGGTAGATCCTGTTGATGAATGTGCACTG
GTAGATCCTGTTGATGAATGTGCACTGGTAGATCCTGTTGACGAATGTAT
CACTAAAAGCAAATAAATAGAGAAATTGTATATATCAAAGGCTAAAGAAT
ACCGAATACCAAAGTGCTTATGTTTGAATCTTTCTATGAAACTGGGTTGA
GATTCTCTTTTGAGTGACCACGCTCACGGTTTACTCAAAAGAGGTGTCTC
CTTTAAGCTAGAACCCAAAAACGG
Run BLAST on NCBI

transcript from alignment at sc0002232:10867..11140

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039895 ID=TCONS_00039895|Name=TCONS_00039895|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0002232:10867..11140 (Clytia hemisphaerica)
CCGTTTTTGGGTTCTAGCTTAAAGGAGACACCTCTTTTGAGTAAACCGTG
AGCGTGGTCACTCAAAAGAGAATCTCAACCCAGTTTCATAGAAAGATTCA
AACATAAGCACTTTGGTATTCGGTATTCTTTAGCCTTTGATATATACAAT
TTCTCTATTTATTTGCTTTTAGTGATACATTCGTCAACAGGATCTACCAG
TGCACATTCATCAACAGGATCTACCAGTGCACATTCATCAACAGGATCTA
CCAGTGTACATTCATCAACAGGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024147XLOC_024147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039895-exon-sc0002232-1491911889:10867..11140TCONS_00039895-exon-sc0002232-1491911889:10867..11140Clytia hemisphaericaexon
TCONS_00039895-exon-sc0002232-1510915933:10867..11140TCONS_00039895-exon-sc0002232-1510915933:10867..11140Clytia hemisphaericaexon
TCONS_00039895-exon-sc0002232-1575043694:10867..11140TCONS_00039895-exon-sc0002232-1575043694:10867..11140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002232supercontigsc0002232:10867..11140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	66.2776	53.9665	48.633	66.4502	13.8786	16.7803	11.7756	8.92224	17.1069	16.469	0	0	0.402279	0	0	0	1.55434	0	0	1.1172	16.685	51.7063	0	0	2.97389	1.66161
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top