TCONS_00039892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039892
Unique NameTCONS_00039892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039892 ID=TCONS_00039892|Name=TCONS_00039892|organism=Clytia hemisphaerica|type=transcript|length=597bp
CCAACCCCCTGATTTGCTGATTTCAGCGGACAATGTGCGGTCTGAAAGTT
CAAGCAACCTAAAACACTTAGCAGGCAACGCGAAGAACCCAATACTtgtC
GAAGACGCAGTATCAACAGCAAATATTCGAAATATCAACGTACAACAAAT
GATCAAAGATTTTGGAGTTTGCACTGATGTACCTAGATGTTTTGATTCCC
CTGATTTTTGTTTCACCAACTCAACGCCAAATGAAATGCTTAAAAAGATT
TGGAATACTGACGAAGCCGTTGGGATCATCATCTGTTGTATTGACAGGTT
TTACATAACAGATGGGGACTTGAAAACGTTAAAATCTGGAAAGCAATTGA
ATGACCAAGTTATTGATGCATATATTTGCCAATTGACAAAGAACTTGccA
TTTGAAGACGGAATTCAACACATTCAGTCCCACAAACttacaaaactttt
caaaaaaggcacgATCACATTCGGTGTGAAAGAAAAGAAAAGCTTACAAA
GTTCCAAGATGATAGTGGGTGCATTTAATATCAATAGTCATTGGATGTTT
TTGGTATGTtctattttctcaattttaattTCTCCTTTACAGCCTGC
Run BLAST on NCBI

protein sequence of TCONS_00039892-protein

>TCONS_00039892-protein ID=TCONS_00039892-protein|Name=TCONS_00039892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
QPPDLLISADNVRSESSSNLKHLAGNAKNPILVEDAVSTANIRNINVQQM
IKDFGVCTDVPRCFDSPDFCFTNSTPNEMLKKIWNTDEAVGIIICCIDRF
YITDGDLKTLKSGKQLNDQVIDAYICQLTKNLPFEDGIQHIQSHKLTKLF
KKGTITFGVKEKKSLQSSKMIVGAFNINSHWMFLVCSIFSILISPLQP
Run BLAST on NCBI

transcript from alignment at sc0002232:18244..20194-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039892 ID=TCONS_00039892|Name=TCONS_00039892|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at sc0002232:18244..20194- (Clytia hemisphaerica)
CCAACCCCCTGATTTGCTGATTTCAGCGGACAATGTGCGGGTAAGTAGTT
TATACATAATTTCCTTTTTTAATTTTTCTCGATGTTGTCCAATGTTGTTA
CTTTTTATCGTTTCCTATGTTTAATGATTGATTCCCTCCCTATATAGTAT
ATAGTGTAATAGAAGGTAAGATTAACTATTCAATATTAGAGAATAACTGT
ATAACCTATTTTCAAATCCACAGTCTGAAAGTTCAAGCAACCTAAAACAC
TTAGCAGGCAACGCGAAGAACCCAATACTTGTGTAAGATTTTTTTTTGTG
TATTGATTTTTCCTTTTAGATGCTATCACATCCGATTATTGAATTCAATA
TCTTGTGCAGCTCGCGCAAATTTTGAATAACATCGGTTAGATTTTGAAAA
AAGACTGCTTCCAAAAACTAATAAATTGCAAATTTATTTGGTGATACTTC
GGTTTATTGTGATAAATCAAATTTTTTTCGTTTTCTTCTAAGCGAAGACG
CAGTATCAACAGCAAATATTCGAAATATCAACGTACAACAAATGATCAAA
GGTAATTTCTTATTTTTATTATAAAGGGTATAAGAGTACCTTCTTCTAAC
ATTGTCGTGATATATTTGTCCTACCTTCTTCTTTTTATTATAAAGGGTAT
AAGGGTACCTTACCTAGGAGTAATAACTGCAATGTTTTTCTCTATAATCT
ATAATGATATTTCACTTTCATCATATTTCAATTATGCAACAGTCTCTTTT
CTAGAAATGAATGAAACAAAAATGTATGAAAAATAACAAGGAATAAAAGA
AAGTAAAGTTACAAGTAAAATCTAAACCTTAAATTGAAAATAAATATTTA
TTCTAGATTTTGGAGTTTGCACTGATGTACCTAGATGTTTTGGTAGGTCC
TTTTCGTCTAAAAAAGTTGATTTTGTTCTATACTAAATCCCTATTCCAAT
AAGGTAAATGCGTGTGATCACGATTTTGGGTACTGCTAATGCAGATCTGT
ATTGCAATATTCTCTTGTTTTTTAGATTCCCCTGATTTTTGTTTCACCAA
CTCAACGCCAAATGAAAGTAAGATGATTTTGTTTTGAAGTATTTTTGAAC
TATATCTGTTGTAGAATTTTTTTGGGGGGGAGTTGGTAAGGGTGATTATT
GGTGGAATTTTTTCAAATAAACTCAATTTGGAAACTCTTCTTGCTAAACT
ATTGTATCGTTTTTAGTGCTTAAAAAGATTTGGAATACTGACGAAGCCGT
TGGGATCATCATCTGTTGTATTGACAGGTTTTACATAACAGATGGGGACT
TGAAAACGTTAAAATCTGGAAAGCAATTGAATGACCAAGTTATTGATGCA
TATATTTGCCAATTGACAAAGAACTTGGTATTATTTAAATACTGATAATT
GTTTCTCCTCTTGACCTTTTCGATTGTCTTCGTTGTTCATTAGCTCATTG
TAGATTTATCAATGGACAGTTGTGATTTGTTTATGCTTTAACTTGCTTTT
ATTTTTGTTTCAGCCATTTGAAGACGGAATTCAACACATTCAGTCCCACA
AACTTACAAAACTTTTCAAAAAAGGCACGATCACATTCGGTGTGAAAGAA
AAGGTTTCTATATTTCAAGCTATTTCAAAATACTGAAAGCAACAAAATTA
TCATTATTGTTCACTTTTTGGCAAATATGCCACACTGATACCATTAATTT
TTGTTTTCTGAAAACCAACTACCCATTATTACCATTTTGCCATTAATTAA
TATTTTAGTCTGATCGATTTTATCACCCTTGTACCTTTTATGTTTTCTCT
ACGTGCGTAATAATGGTTTATTGTCTTCAACCTTTGTACAGAAAAGCTTA
CAAAGTTCCAAGATGATAGTGGGTGCATTTAATATCAATAGTCATTGGAT
GTTTTTGGTATGTTCTATTTTCTCAATTTTAATTTCTCCTTTACAGCCTG
C

Coding sequence (CDS) from alignment at sc0002232:18244..20194-

>TCONS_00039892 ID=TCONS_00039892|Name=TCONS_00039892|organism=Clytia hemisphaerica|type=CDS|length=4752bp|location=Sequence derived from alignment at sc0002232:18244..20194- (Clytia hemisphaerica)
AAAAGCTTACAAAGTTCCAAGATGATAGTGGGTGCATTTAATATCAATAG
TCATTGGATGTTTTTGGTATGTTCTATTTTCTCAATTTTAATTTCTCCTT
TACAGCCTCCATTTGAAGACGGAATTCAACACATTCAGTCCCACAAACTT
ACAAAACTTTTCAAAAAAGGCACGATCACATTCGGTGTGAAAGAAAAGTG
CTTAAAAAGATTTGGAATACTGACGAAGCCGTTGGGATCATCATCTGTTG
TATTGACAGGTTTTACATAACAGATGGGGACTTGAAAACGTTAAAATCTG
GAAAGCAATTGAATGACCAAGTTATTGATGCATATATTTGCCAATTGACA
AAGAACTTGATTCCCCTGATTTTTGTTTCACCAACTCAACGCCAAATGAA
AATTTTGGAGTTTGCACTGATGTACCTAGATGTTTTGCGAAGACGCAGTA
TCAACAGCAAATATTCGAAATATCAACGTACAACAAATGATCAAAGTCTG
AAAGTTCAAGCAACCTAAAACACTTAGCAGGCAACGCGAAGAACCCAATA
CTTGTCAACCCCCTGATTTGCTGATTTCAGCGGACAATGTGCGGAAAAGC
TTACAAAGTTCCAAGATGATAGTGGGTGCATTTAATATCAATAGTCATTG
GATGTTTTTGGTATGTTCTATTTTCTCAATTTTAATTTCTCCTTTACAGC
CTCCATTTGAAGACGGAATTCAACACATTCAGTCCCACAAACTTACAAAA
CTTTTCAAAAAAGGCACGATCACATTCGGTGTGAAAGAAAAGTGCTTAAA
AAGATTTGGAATACTGACGAAGCCGTTGGGATCATCATCTGTTGTATTGA
CAGGTTTTACATAACAGATGGGGACTTGAAAACGTTAAAATCTGGAAAGC
AATTGAATGACCAAGTTATTGATGCATATATTTGCCAATTGACAAAGAAC
TTGATTCCCCTGATTTTTGTTTCACCAACTCAACGCCAAATGAAAATTTT
GGAGTTTGCACTGATGTACCTAGATGTTTTGCGAAGACGCAGTATCAACA
GCAAATATTCGAAATATCAACGTACAACAAATGATCAAAGTCTGAAAGTT
CAAGCAACCTAAAACACTTAGCAGGCAACGCGAAGAACCCAATACTTGTC
AACCCCCTGATTTGCTGATTTCAGCGGACAATGTGCGGAAAAGCTTACAA
AGTTCCAAGATGATAGTGGGTGCATTTAATATCAATAGTCATTGGATGTT
TTTGGTATGTTCTATTTTCTCAATTTTAATTTCTCCTTTACAGCCTCCAT
TTGAAGACGGAATTCAACACATTCAGTCCCACAAACTTACAAAACTTTTC
AAAAAAGGCACGATCACATTCGGTGTGAAAGAAAAGTGCTTAAAAAGATT
TGGAATACTGACGAAGCCGTTGGGATCATCATCTGTTGTATTGACAGGTT
TTACATAACAGATGGGGACTTGAAAACGTTAAAATCTGGAAAGCAATTGA
ATGACCAAGTTATTGATGCATATATTTGCCAATTGACAAAGAACTTGATT
CCCCTGATTTTTGTTTCACCAACTCAACGCCAAATGAAAATTTTGGAGTT
TGCACTGATGTACCTAGATGTTTTGCGAAGACGCAGTATCAACAGCAAAT
ATTCGAAATATCAACGTACAACAAATGATCAAAGTCTGAAAGTTCAAGCA
ACCTAAAACACTTAGCAGGCAACGCGAAGAACCCAATACTTGTCAACCCC
CTGATTTGCTGATTTCAGCGGACAATGTGCGGAAAAGCTTACAAAGTTCC
AAGATGATAGTGGGTGCATTTAATATCAATAGTCATTGGATGTTTTTGGT
ATGTTCTATTTTCTCAATTTTAATTTCTCCTTTACAGCCTCCATTTGAAG
ACGGAATTCAACACATTCAGTCCCACAAACTTACAAAACTTTTCAAAAAA
GGCACGATCACATTCGGTGTGAAAGAAAAGTGCTTAAAAAGATTTGGAAT
ACTGACGAAGCCGTTGGGATCATCATCTGTTGTATTGACAGGTTTTACAT
AACAGATGGGGACTTGAAAACGTTAAAATCTGGAAAGCAATTGAATGACC
AAGTTATTGATGCATATATTTGCCAATTGACAAAGAACTTGATTCCCCTG
ATTTTTGTTTCACCAACTCAACGCCAAATGAAAATTTTGGAGTTTGCACT
GATGTACCTAGATGTTTTGCGAAGACGCAGTATCAACAGCAAATATTCGA
AATATCAACGTACAACAAATGATCAAAGTCTGAAAGTTCAAGCAACCTAA
AACACTTAGCAGGCAACGCGAAGAACCCAATACTTGTCAACCCCCTGATT
TGCTGATTTCAGCGGACAATGTGCGGAAAAGCTTACAAAGTTCCAAGATG
ATAGTGGGTGCATTTAATATCAATAGTCATTGGATGTTTTTGGTATGTTC
TATTTTCTCAATTTTAATTTCTCCTTTACAGCCTCCATTTGAAGACGGAA
TTCAACACATTCAGTCCCACAAACTTACAAAACTTTTCAAAAAAGGCACG
ATCACATTCGGTGTGAAAGAAAAGTGCTTAAAAAGATTTGGAATACTGAC
GAAGCCGTTGGGATCATCATCTGTTGTATTGACAGGTTTTACATAACAGA
TGGGGACTTGAAAACGTTAAAATCTGGAAAGCAATTGAATGACCAAGTTA
TTGATGCATATATTTGCCAATTGACAAAGAACTTGATTCCCCTGATTTTT
GTTTCACCAACTCAACGCCAAATGAAAATTTTGGAGTTTGCACTGATGTA
CCTAGATGTTTTGCGAAGACGCAGTATCAACAGCAAATATTCGAAATATC
AACGTACAACAAATGATCAAAGTCTGAAAGTTCAAGCAACCTAAAACACT
TAGCAGGCAACGCGAAGAACCCAATACTTGTCAACCCCCTGATTTGCTGA
TTTCAGCGGACAATGTGCGGAAAAGCTTACAAAGTTCCAAGATGATAGTG
GGTGCATTTAATATCAATAGTCATTGGATGTTTTTGGTATGTTCTATTTT
CTCAATTTTAATTTCTCCTTTACAGCCTCCATTTGAAGACGGAATTCAAC
ACATTCAGTCCCACAAACTTACAAAACTTTTCAAAAAAGGCACGATCACA
TTCGGTGTGAAAGAAAAGTGCTTAAAAAGATTTGGAATACTGACGAAGCC
GTTGGGATCATCATCTGTTGTATTGACAGGTTTTACATAACAGATGGGGA
CTTGAAAACGTTAAAATCTGGAAAGCAATTGAATGACCAAGTTATTGATG
CATATATTTGCCAATTGACAAAGAACTTGATTCCCCTGATTTTTGTTTCA
CCAACTCAACGCCAAATGAAAATTTTGGAGTTTGCACTGATGTACCTAGA
TGTTTTGCGAAGACGCAGTATCAACAGCAAATATTCGAAATATCAACGTA
CAACAAATGATCAAAGTCTGAAAGTTCAAGCAACCTAAAACACTTAGCAG
GCAACGCGAAGAACCCAATACTTGTCAACCCCCTGATTTGCTGATTTCAG
CGGACAATGTGCGGAAAAGCTTACAAAGTTCCAAGATGATAGTGGGTGCA
TTTAATATCAATAGTCATTGGATGTTTTTGGTATGTTCTATTTTCTCAAT
TTTAATTTCTCCTTTACAGCCTCCATTTGAAGACGGAATTCAACACATTC
AGTCCCACAAACTTACAAAACTTTTCAAAAAAGGCACGATCACATTCGGT
GTGAAAGAAAAGTGCTTAAAAAGATTTGGAATACTGACGAAGCCGTTGGG
ATCATCATCTGTTGTATTGACAGGTTTTACATAACAGATGGGGACTTGAA
AACGTTAAAATCTGGAAAGCAATTGAATGACCAAGTTATTGATGCATATA
TTTGCCAATTGACAAAGAACTTGATTCCCCTGATTTTTGTTTCACCAACT
CAACGCCAAATGAAAATTTTGGAGTTTGCACTGATGTACCTAGATGTTTT
GCGAAGACGCAGTATCAACAGCAAATATTCGAAATATCAACGTACAACAA
ATGATCAAAGTCTGAAAGTTCAAGCAACCTAAAACACTTAGCAGGCAACG
CGAAGAACCCAATACTTGTCAACCCCCTGATTTGCTGATTTCAGCGGACA
ATGTGCGGAAAAGCTTACAAAGTTCCAAGATGATAGTGGGTGCATTTAAT
ATCAATAGTCATTGGATGTTTTTGGTATGTTCTATTTTCTCAATTTTAAT
TTCTCCTTTACAGCCTCCATTTGAAGACGGAATTCAACACATTCAGTCCC
ACAAACTTACAAAACTTTTCAAAAAAGGCACGATCACATTCGGTGTGAAA
GAAAAGTGCTTAAAAAGATTTGGAATACTGACGAAGCCGTTGGGATCATC
ATCTGTTGTATTGACAGGTTTTACATAACAGATGGGGACTTGAAAACGTT
AAAATCTGGAAAGCAATTGAATGACCAAGTTATTGATGCATATATTTGCC
AATTGACAAAGAACTTGATTCCCCTGATTTTTGTTTCACCAACTCAACGC
CAAATGAAAATTTTGGAGTTTGCACTGATGTACCTAGATGTTTTGCGAAG
ACGCAGTATCAACAGCAAATATTCGAAATATCAACGTACAACAAATGATC
AAAGTCTGAAAGTTCAAGCAACCTAAAACACTTAGCAGGCAACGCGAAGA
ACCCAATACTTGTCAACCCCCTGATTTGCTGATTTCAGCGGACAATGTGC
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024144XLOC_024144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039892-exon-sc0002232-1575043694:20155..20194TCONS_00039892-exon-sc0002232-1575043694:20155..20194Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1575043694:19913..19971TCONS_00039892-exon-sc0002232-1575043694:19913..19971Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1575043694:19644..19702TCONS_00039892-exon-sc0002232-1575043694:19644..19702Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1575043694:19303..19338TCONS_00039892-exon-sc0002232-1575043694:19303..19338Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1575043694:19128..19169TCONS_00039892-exon-sc0002232-1575043694:19128..19169Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1575043694:18818..18978TCONS_00039892-exon-sc0002232-1575043694:18818..18978Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1575043694:18592..18681TCONS_00039892-exon-sc0002232-1575043694:18592..18681Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1575043694:18244..18353TCONS_00039892-exon-sc0002232-1575043694:18244..18353Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:20155..20194TCONS_00039892-exon-sc0002232-1510915933:20155..20194Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:19913..19971TCONS_00039892-exon-sc0002232-1510915933:19913..19971Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:19644..19702TCONS_00039892-exon-sc0002232-1510915933:19644..19702Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:19303..19338TCONS_00039892-exon-sc0002232-1510915933:19303..19338Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:19128..19169TCONS_00039892-exon-sc0002232-1510915933:19128..19169Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:18818..18978TCONS_00039892-exon-sc0002232-1510915933:18818..18978Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:18592..18681TCONS_00039892-exon-sc0002232-1510915933:18592..18681Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1510915933:18244..18353TCONS_00039892-exon-sc0002232-1510915933:18244..18353Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:20155..20194TCONS_00039892-exon-sc0002232-1491911889:20155..20194Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:19913..19971TCONS_00039892-exon-sc0002232-1491911889:19913..19971Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:19644..19702TCONS_00039892-exon-sc0002232-1491911889:19644..19702Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:19303..19338TCONS_00039892-exon-sc0002232-1491911889:19303..19338Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:19128..19169TCONS_00039892-exon-sc0002232-1491911889:19128..19169Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:18818..18978TCONS_00039892-exon-sc0002232-1491911889:18818..18978Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:18592..18681TCONS_00039892-exon-sc0002232-1491911889:18592..18681Clytia hemisphaericaexon
TCONS_00039892-exon-sc0002232-1491911889:18244..18353TCONS_00039892-exon-sc0002232-1491911889:18244..18353Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039892-proteinTCONS_00039892-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002232supercontigsc0002232:18244..20194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.78543	4.26964	3.07715	5.28888	2.95471	3.10511	1.72287	2.55991	2.33702	2.3138	0	0	0.460036	0.215118	0	0	0.411232	0	0	0.250975	2.59702	3.3792	0	0	0.411084	0.333325
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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