TCONS_00039883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039883
Unique NameTCONS_00039883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039883 ID=TCONS_00039883|Name=TCONS_00039883|organism=Clytia hemisphaerica|type=transcript|length=587bp
CAAATTTTctcatgaaaattgaaaaactcctagtaaattgaaggaaaata
gtaaaaaaaaatcaaggttATATTGCGCAAGCTGTCTTGCAAAAATTAAT
ACAAAAGGaatcaaattgattttaaaaaatgttttatttcagCGTTCTTA
CTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTTTGTCGAGCTTC
TATTGTTACAGGAACATACCAAAATCTGCTCTAAGAACCCTGGAAATGAA
CAGAAGGAGAATGGGCAGAATGATAAAGAAACTAGTCAATCATCAACATC
AACTTCAACAAGGACAAGTTCATTTGTAAATACTCACACAAGAAATGATG
CACCAGTAGCCATGCCATTACAACCAAGGATTTCAACTGGTACCCAACCA
AGCTCAGAAATTATGGATATAACTTCAACTTTctcAATGGCTGCTGATAC
GGATGATGTCATCACCTCAGGACTCGCAGACTCAGTGTCCAAATATAACG
CTATGAAAGCAACTGTAAAGGAATGGGAAAAGTGTGATATCTGTGAGGAG
GTTATCGAAGACTCTCCCTCTCATATGATGCGTTGCA
Run BLAST on NCBI

transcript from alignment at sc0002229:11513..15228-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039883 ID=TCONS_00039883|Name=TCONS_00039883|organism=Clytia hemisphaerica|type=transcript|length=3716bp|location=Sequence derived from alignment at sc0002229:11513..15228- (Clytia hemisphaerica)
CAAATTTTCTCATGAAAATTGAAAAACTCCTAGTAAATTGAAGGAAAATA
GTAAAAAAAAATCAAGGTTATATTGCGCAAGCTGTCTTGCAAAAATTAAT
ACAAAAGGAATCAAATTGATTTTAAAAAATGTTTTATTTCAGCGTTCTTA
CTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTTTGTCGAGCTTC
TATTGTTACAGGAACATACCAAAATCTGCTCTAAGGTAACTTTTTTAAAC
TTTTGAATAAAGAGCTTTTTAATTTGATAATAAAAGTTACAGGGGTTTCA
TTAAAACATGGTACCATAGGGTACCCTGATATGGTAGACCTTCTGGTATA
CCCTGCCCTGAAAAAAGTTTGGAGTCAATGAAAAATATATAAAGTCACAA
TTAAATGGTGATGGTTTTGTGCTTGTTGAAAAAATAACTTTGACTTGAGA
AATCTCACTTGAAAAAAGGTTAAAATCCCTTATTTAATTTCTCACCAATA
GCTCCTGAAATATTTCTTTTCTCAAGTTATTCAACCTATGCCATTAAAAC
CTTGTCATCTTTGATCCACTGGGAGAGGATAATTTGACATTTTTTCCCTT
TAGGAAGTTTANTCACTTGAAAAAAGGTTAAAAATCCCTTATTTAATTTC
TCACCAATAGCTCCTGAAATATGCCATTAAAACCTTTTCATCTTTGATCC
ACTGGGAGAAGATAATTTGACATTTTTTCCCTTTAGGAAGTTTAATTTTC
TTATGTCAAACTGTTTTCATTCATTATTTTATGTTATTTTTCTTATTCGT
TAGAACCCTGGAAATGAACAGAAGGAGAATGGGCAGAATGATAAAGAGTG
AGAGTTATGAGATTTTATTTGATTTAGATAAAGTTAGATTCACTCTGTCT
CTTGGATATGCTTCTTTTATTTCTACTCTGCTTGTTGCTTTATTTTCACC
TATATCAGGTAGGTCCGTACATGTATCAACTTATTAAATGATAAGTTAAT
GTTTTCATTCTTCAGATAAGATTCTTTTTTAAGTATGAAACACAATCCAA
TTCAAATTAGACTTTATGCCGAAAGTTATTTTTATTTTCTCTTTAATTTT
AGAACTAGTCAATCATCAACTTCAACAAGGACAAGTTCATTTGTAAATAC
TCACACAAGAAATGATGCACCAGTGTAAGTTTTAAGTTTTTTTGATAGAT
GATATTATTTACTTTTAGCCAGATTGATTCCTCATTTTGTTGTTTTTATG
AACCTAAACTGTAAAGTTGGGTGAGCTGATCAAATTTTTAGGATTTGCCC
CCAATTTCTTTCATCTATTAAAATTGAGGATTTCAAACCCCCCACCTGCA
TTCAAGAGTGACCTTTTGATTAGGGAAGCACTATGATGACAAATTAGTTT
TTCTTTTTTCTCAAAAAAGGCCCTTTTTTCAAGAACAAGCAGAATCCAAT
TTAATCTAGGCTTTATGCCAAAAGTTATTTTTATTTTCTCTTTAATTTCA
GAACTAGTCAATCATCAACATCAACTTCAACAAGGACAAGTTCATTTGTA
AATACTCACACAAGAAATGATGCACCAGTGTAAGCTTTAAGTTTTTTTGA
TAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTCTCTTTAATTTTAGAACTAGTCAATCATCA
ACATCAACTTCAACAAGGACAAGTTCATTTGTAAATACTCACACAAGAAA
TGATGCACCAGTGTAAGCTTTAAGTTTTTTTGATAGATGATATTATTTAC
TTTTAGCCAGATTGATTCCTCATTTTGTTGTTTTAATGAACCTAAACTGT
AAAGTACGGTAAGCTGGTCAGCTGGCAAAAAGATATCTGAACATTTCAGG
TGTTTATTTATTAGTGAGGACCACTTTGTTCCAAAAACATCCTTCGTGTG
TACAGTTTTGTTAGATGCAAACTAATTTAGTTAGTTGTTGATTTTAATCC
ATTTTCCTTCAACTTGTTCCAACGCGATGTCATAACTTGATATTGAAAAT
TATTAGAGGATGGGGCTTAATTGGGGGAAATACGGTAAGGCCTAAATGAA
TTTTGTTTTCATAAGGATCCCATCAGCAATTGTGTTGTTGACTCAAAAAC
ATTAGGTTCATTTGAAAGAGGACCTTGTGAACAAAAAGAATATTATTACG
AAAAACTAGCCTAGTTAAAAACAATAAGTATCATGCCAAATTTGCATTCA
TTTAATTTTTAGAGCCATGCCATTACAACCAAGGATTTCAACTGGTACCC
AACCAAGCTCAGAAATTATGGATATAACTTCAACTTTGTAGGTTGATCAT
TGGTGGTTACACCCCGTTTTATTTAAATTTCTGGAATCCTTTGGTAACGT
AACTAAAAAGAAGAGAATTTGAAAATTTTGATACGGTGGTTGTCTGTACG
AGGAACAATTATGAAAGGAATGTTTAGATTGAAGCCTTCAATATAAAGTG
TCTATTTTACATAACCCACTCAACATTTTACTGAGTTGTCTAGAATTTAC
AGCTGAAGATAAGCCTTTAAAACTGTAATCGCCATTTTAGATCTGTGTTC
TCAAGAAATACAGGTCAGACTGGTTCTCAGCAACATTCTGTTTCTGCTTC
CTTGCCAGTACTAACTGCGTGGTAAGGGGAGGATGAAGGCAAATCATCAT
TCAATACCAGCGCCTAGCCCCTCCCATCAAGAAACGACTGCGCACTTACA
CTTATATAAAATTTAATTTTTCTTTTAGCTCAATGGCTGCTGATACGGAT
GATGTCATCACCTCAGGACTCGCAGACTCAGTGTCCAAATATAACGCTAT
GTAAGACTAAAATATTTCAATAATAGTGCTCTGTATTGGTAAAATATGTT
TACAATTTCAACCCCATATGAAATTACCCAACCCTAATCAACCTACTTTT
TTTCTTTTTACTTTTTTCATAATAGTGAGGTGGTGAAAACATGATTTTCG
GTGGAAATCTTTTTAGCAAATTTAGACGAAGAACTGCTTAACAATTTGGT
TTTTTTCGACTGGTTTTTTTTATCATTTTTGTAAATGGTCCTTTAAAAAT
GCCATTGTGAAAACGATTTTTTCCAAAAGAATCTTTTGGGCTCAAAAAAT
TATTTTTAGCCATAAGGAAGGATCAAAGCATAAATCATAGTAGGCTACGA
TGCATAAATCAATGTTGGGTCTTAACTGAATTATTTCTAATTTGCATGAG
ATGGATCAATTTTACTAATGAAATTGTATTTCTACAAATTATGTGAGTTG
TTTGGTTTGAAATTTTCTGATTTGCTTTGCTTTCATTTTCATTTCCCTTC
CAAATTTACCATTATATTACCTTTTTTCCATAGGAAAGCAACTGTAAAGG
AATGGGAAAAGTGTGATATCTGTGAGGAGGTTATCGAAGACTCTCCCTCT
CATATGATGCGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024137XLOC_024137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039883-exon-sc0002229-1575043694:14994..15228TCONS_00039883-exon-sc0002229-1575043694:14994..15228Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1575043694:14382..14425TCONS_00039883-exon-sc0002229-1575043694:14382..14425Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1575043694:13650..13727TCONS_00039883-exon-sc0002229-1575043694:13650..13727Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1575043694:12642..12716TCONS_00039883-exon-sc0002229-1575043694:12642..12716Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1575043694:12129..12200TCONS_00039883-exon-sc0002229-1575043694:12129..12200Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1575043694:11513..11595TCONS_00039883-exon-sc0002229-1575043694:11513..11595Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1510915933:14994..15228TCONS_00039883-exon-sc0002229-1510915933:14994..15228Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1510915933:14382..14425TCONS_00039883-exon-sc0002229-1510915933:14382..14425Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1510915933:13650..13727TCONS_00039883-exon-sc0002229-1510915933:13650..13727Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1510915933:12642..12716TCONS_00039883-exon-sc0002229-1510915933:12642..12716Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1510915933:12129..12200TCONS_00039883-exon-sc0002229-1510915933:12129..12200Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1510915933:11513..11595TCONS_00039883-exon-sc0002229-1510915933:11513..11595Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1491911889:14994..15228TCONS_00039883-exon-sc0002229-1491911889:14994..15228Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1491911889:14382..14425TCONS_00039883-exon-sc0002229-1491911889:14382..14425Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1491911889:13650..13727TCONS_00039883-exon-sc0002229-1491911889:13650..13727Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1491911889:12642..12716TCONS_00039883-exon-sc0002229-1491911889:12642..12716Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1491911889:12129..12200TCONS_00039883-exon-sc0002229-1491911889:12129..12200Clytia hemisphaericaexon
TCONS_00039883-exon-sc0002229-1491911889:11513..11595TCONS_00039883-exon-sc0002229-1491911889:11513..11595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002229supercontigsc0002229:11513..15228 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.634385	0.660248	0	0	4.11078	2.03931	3.21588	1.26986	0.220655	0.926313	0.461415	1.08685	0.160161	0.757389	0.163203	0.45094	1.12079	0.74712	1.09217	0.307316	0.626276	0.892886	0.679406	0.261706	1.54328	0.592975	0.254759	0	0	0.37865
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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