TCONS_00039882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039882
Unique NameTCONS_00039882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039882 ID=TCONS_00039882|Name=TCONS_00039882|organism=Clytia hemisphaerica|type=transcript|length=525bp
tatttcagCGTTCTTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGG
GACTTTGTCGAGCTTCTATTGTTACAGGAACATACCAAAATCTGCTCTAA
GAACCCTGGAAATGAACAGAAGGAGAATGGGCAGAATGATAAAGAAACTA
GTCAATCATCAACTTCAACAAGGACAAGTTCATTTGTAAATACTCACACA
AGAAATGATGCACCAGTAACTAGTCAATCATCAACATCAACTTCAACAAG
GACAAGTTCATTTGTAAATACTCACACAAGAAATGATGCACCAGTAGCCA
TGCCATTACAACCAAGGATTTCAACTGGTACCCAACCAAGCTCAGAAATT
ATGGATATAACTTCAACTTTctcAATGGCTGCTGATACGGATGATGTCAT
CACCTCAGGACTCGCAGACTCAGTGTCCAAATATAACGCTATGAAAGCAA
CTGTAAAGGAATGGGAAAAGTGTGATATCTGTGAGGAGGTTATCGAAGAC
TCTCCCTCTCATATGATGCGTTGCA
Run BLAST on NCBI

transcript from alignment at sc0002229:11513..15094-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039882 ID=TCONS_00039882|Name=TCONS_00039882|organism=Clytia hemisphaerica|type=transcript|length=3582bp|location=Sequence derived from alignment at sc0002229:11513..15094- (Clytia hemisphaerica)
TATTTCAGCGTTCTTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGG
GACTTTGTCGAGCTTCTATTGTTACAGGAACATACCAAAATCTGCTCTAA
GGTAACTTTTTTAAACTTTTGAATAAAGAGCTTTTTAATTTGATAATAAA
AGTTACAGGGGTTTCATTAAAACATGGTACCATAGGGTACCCTGATATGG
TAGACCTTCTGGTATACCCTGCCCTGAAAAAAGTTTGGAGTCAATGAAAA
ATATATAAAGTCACAATTAAATGGTGATGGTTTTGTGCTTGTTGAAAAAA
TAACTTTGACTTGAGAAATCTCACTTGAAAAAAGGTTAAAATCCCTTATT
TAATTTCTCACCAATAGCTCCTGAAATATTTCTTTTCTCAAGTTATTCAA
CCTATGCCATTAAAACCTTGTCATCTTTGATCCACTGGGAGAGGATAATT
TGACATTTTTTCCCTTTAGGAAGTTTANTCACTTGAAAAAAGGTTAAAAA
TCCCTTATTTAATTTCTCACCAATAGCTCCTGAAATATGCCATTAAAACC
TTTTCATCTTTGATCCACTGGGAGAAGATAATTTGACATTTTTTCCCTTT
AGGAAGTTTAATTTTCTTATGTCAAACTGTTTTCATTCATTATTTTATGT
TATTTTTCTTATTCGTTAGAACCCTGGAAATGAACAGAAGGAGAATGGGC
AGAATGATAAAGAGTGAGAGTTATGAGATTTTATTTGATTTAGATAAAGT
TAGATTCACTCTGTCTCTTGGATATGCTTCTTTTATTTCTACTCTGCTTG
TTGCTTTATTTTCACCTATATCAGGTAGGTCCGTACATGTATCAACTTAT
TAAATGATAAGTTAATGTTTTCATTCTTCAGATAAGATTCTTTTTTAAGT
ATGAAACACAATCCAATTCAAATTAGACTTTATGCCGAAAGTTATTTTTA
TTTTCTCTTTAATTTTAGAACTAGTCAATCATCAACTTCAACAAGGACAA
GTTCATTTGTAAATACTCACACAAGAAATGATGCACCAGTGTAAGTTTTA
AGTTTTTTTGATAGATGATATTATTTACTTTTAGCCAGATTGATTCCTCA
TTTTGTTGTTTTTATGAACCTAAACTGTAAAGTTGGGTGAGCTGATCAAA
TTTTTAGGATTTGCCCCCAATTTCTTTCATCTATTAAAATTGAGGATTTC
AAACCCCCCACCTGCATTCAAGAGTGACCTTTTGATTAGGGAAGCACTAT
GATGACAAATTAGTTTTTCTTTTTTCTCAAAAAAGGCCCTTTTTTCAAGA
ACAAGCAGAATCCAATTTAATCTAGGCTTTATGCCAAAAGTTATTTTTAT
TTTCTCTTTAATTTCAGAACTAGTCAATCATCAACATCAACTTCAACAAG
GACAAGTTCATTTGTAAATACTCACACAAGAAATGATGCACCAGTGTAAG
CTTTAAGTTTTTTTGATAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTTTAATTTTAG
AACTAGTCAATCATCAACATCAACTTCAACAAGGACAAGTTCATTTGTAA
ATACTCACACAAGAAATGATGCACCAGTGTAAGCTTTAAGTTTTTTTGAT
AGATGATATTATTTACTTTTAGCCAGATTGATTCCTCATTTTGTTGTTTT
AATGAACCTAAACTGTAAAGTACGGTAAGCTGGTCAGCTGGCAAAAAGAT
ATCTGAACATTTCAGGTGTTTATTTATTAGTGAGGACCACTTTGTTCCAA
AAACATCCTTCGTGTGTACAGTTTTGTTAGATGCAAACTAATTTAGTTAG
TTGTTGATTTTAATCCATTTTCCTTCAACTTGTTCCAACGCGATGTCATA
ACTTGATATTGAAAATTATTAGAGGATGGGGCTTAATTGGGGGAAATACG
GTAAGGCCTAAATGAATTTTGTTTTCATAAGGATCCCATCAGCAATTGTG
TTGTTGACTCAAAAACATTAGGTTCATTTGAAAGAGGACCTTGTGAACAA
AAAGAATATTATTACGAAAAACTAGCCTAGTTAAAAACAATAAGTATCAT
GCCAAATTTGCATTCATTTAATTTTTAGAGCCATGCCATTACAACCAAGG
ATTTCAACTGGTACCCAACCAAGCTCAGAAATTATGGATATAACTTCAAC
TTTGTAGGTTGATCATTGGTGGTTACACCCCGTTTTATTTAAATTTCTGG
AATCCTTTGGTAACGTAACTAAAAAGAAGAGAATTTGAAAATTTTGATAC
GGTGGTTGTCTGTACGAGGAACAATTATGAAAGGAATGTTTAGATTGAAG
CCTTCAATATAAAGTGTCTATTTTACATAACCCACTCAACATTTTACTGA
GTTGTCTAGAATTTACAGCTGAAGATAAGCCTTTAAAACTGTAATCGCCA
TTTTAGATCTGTGTTCTCAAGAAATACAGGTCAGACTGGTTCTCAGCAAC
ATTCTGTTTCTGCTTCCTTGCCAGTACTAACTGCGTGGTAAGGGGAGGAT
GAAGGCAAATCATCATTCAATACCAGCGCCTAGCCCCTCCCATCAAGAAA
CGACTGCGCACTTACACTTATATAAAATTTAATTTTTCTTTTAGCTCAAT
GGCTGCTGATACGGATGATGTCATCACCTCAGGACTCGCAGACTCAGTGT
CCAAATATAACGCTATGTAAGACTAAAATATTTCAATAATAGTGCTCTGT
ATTGGTAAAATATGTTTACAATTTCAACCCCATATGAAATTACCCAACCC
TAATCAACCTACTTTTTTTCTTTTTACTTTTTTCATAATAGTGAGGTGGT
GAAAACATGATTTTCGGTGGAAATCTTTTTAGCAAATTTAGACGAAGAAC
TGCTTAACAATTTGGTTTTTTTCGACTGGTTTTTTTTATCATTTTTGTAA
ATGGTCCTTTAAAAATGCCATTGTGAAAACGATTTTTTCCAAAAGAATCT
TTTGGGCTCAAAAAATTATTTTTAGCCATAAGGAAGGATCAAAGCATAAA
TCATAGTAGGCTACGATGCATAAATCAATGTTGGGTCTTAACTGAATTAT
TTCTAATTTGCATGAGATGGATCAATTTTACTAATGAAATTGTATTTCTA
CAAATTATGTGAGTTGTTTGGTTTGAAATTTTCTGATTTGCTTTGCTTTC
ATTTTCATTTCCCTTCCAAATTTACCATTATATTACCTTTTTTCCATAGG
AAAGCAACTGTAAAGGAATGGGAAAAGTGTGATATCTGTGAGGAGGTTAT
CGAAGACTCTCCCTCTCATATGATGCGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024137XLOC_024137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039882-exon-sc0002229-1575043694:14994..15094TCONS_00039882-exon-sc0002229-1575043694:14994..15094Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1575043694:14382..14425TCONS_00039882-exon-sc0002229-1575043694:14382..14425Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1575043694:14055..14126TCONS_00039882-exon-sc0002229-1575043694:14055..14126Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1575043694:13650..13727TCONS_00039882-exon-sc0002229-1575043694:13650..13727Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1575043694:12642..12716TCONS_00039882-exon-sc0002229-1575043694:12642..12716Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1575043694:12129..12200TCONS_00039882-exon-sc0002229-1575043694:12129..12200Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1575043694:11513..11595TCONS_00039882-exon-sc0002229-1575043694:11513..11595Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1510915933:14994..15094TCONS_00039882-exon-sc0002229-1510915933:14994..15094Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1510915933:14382..14425TCONS_00039882-exon-sc0002229-1510915933:14382..14425Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1510915933:14055..14126TCONS_00039882-exon-sc0002229-1510915933:14055..14126Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1510915933:13650..13727TCONS_00039882-exon-sc0002229-1510915933:13650..13727Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1510915933:12642..12716TCONS_00039882-exon-sc0002229-1510915933:12642..12716Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1510915933:12129..12200TCONS_00039882-exon-sc0002229-1510915933:12129..12200Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1510915933:11513..11595TCONS_00039882-exon-sc0002229-1510915933:11513..11595Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1491911889:14994..15094TCONS_00039882-exon-sc0002229-1491911889:14994..15094Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1491911889:14382..14425TCONS_00039882-exon-sc0002229-1491911889:14382..14425Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1491911889:14055..14126TCONS_00039882-exon-sc0002229-1491911889:14055..14126Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1491911889:13650..13727TCONS_00039882-exon-sc0002229-1491911889:13650..13727Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1491911889:12642..12716TCONS_00039882-exon-sc0002229-1491911889:12642..12716Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1491911889:12129..12200TCONS_00039882-exon-sc0002229-1491911889:12129..12200Clytia hemisphaericaexon
TCONS_00039882-exon-sc0002229-1491911889:11513..11595TCONS_00039882-exon-sc0002229-1491911889:11513..11595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002229supercontigsc0002229:11513..15094 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144695	0	0.124751	0	5.62561	3.26884	1.23321	3.40693	0.691599	1.60209	2.20012	1.46871	0.504939	0	3.05308	1.3346	0.767207	0	0	1.0007	0.436731	0	0.345846	0.711512	1.35369	2.20461	0.11319	0	0	1.04746
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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