TCONS_00039879 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039879
Unique Name	TCONS_00039879
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	463

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002229:11513..14392-

transcript sequence

>TCONS_00039879 ID=TCONS_00039879|Name=TCONS_00039879|organism=Clytia hemisphaerica|type=transcript|length=463bp
AATGATAAAGAAACTAGTCAATCATCAACTTCAACAAGGACAAGTTCATT
TGTAAATACTCACACAAGAAATGATGCACCAGTTCAATCATCAACATCAA
CTTCAACAAGGACAAGTTCATTTGTAAATACTCACACAAGAAATGATGCA
CCAGTAACTAGTCAATCATCAACATCAACTTCAACAAGGACAAGTTCATT
TGTAAATACTCACACAAGAAATGATGCACCAGTAGCCATGCCATTACAAC
CAAGGATTTCAACTGGTACCCAACCAAGCTCAGAAATTATGGATATAACT
TCAACTTTctcAATGGCTGCTGATACGGATGATGTCATCACCTCAGGACT
CGCAGACTCAGTGTCCAAATATAACGCTATGAAAGCAACTGTAAAGGAAT
GGGAAAAGTGTGATATCTGTGAGGAGGTTATCGAAGACTCTCCCTCTCAT
ATGATGCGTTGCA

Run BLAST on NCBI

transcript from alignment at sc0002229:11513..14392-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039879 ID=TCONS_00039879|Name=TCONS_00039879|organism=Clytia hemisphaerica|type=transcript|length=2880bp|location=Sequence derived from alignment at sc0002229:11513..14392- (Clytia hemisphaerica)
AATGATAAAGAGTGAGAGTTATGAGATTTTATTTGATTTAGATAAAGTTA
GATTCACTCTGTCTCTTGGATATGCTTCTTTTATTTCTACTCTGCTTGTT
GCTTTATTTTCACCTATATCAGGTAGGTCCGTACATGTATCAACTTATTA
AATGATAAGTTAATGTTTTCATTCTTCAGATAAGATTCTTTTTTAAGTAT
GAAACACAATCCAATTCAAATTAGACTTTATGCCGAAAGTTATTTTTATT
TTCTCTTTAATTTTAGAACTAGTCAATCATCAACTTCAACAAGGACAAGT
TCATTTGTAAATACTCACACAAGAAATGATGCACCAGTGTAAGTTTTAAG
TTTTTTTGATAGATGATATTATTTACTTTTAGCCAGATTGATTCCTCATT
TTGTTGTTTTTATGAACCTAAACTGTAAAGTTGGGTGAGCTGATCAAATT
TTTAGGATTTGCCCCCAATTTCTTTCATCTATTAAAATTGAGGATTTCAA
ACCCCCCACCTGCATTCAAGAGTGACCTTTTGATTAGGGAAGCACTATGA
TGACAAATTAGTTTTTCTTTTTTCTCAAAAAAGGCCCTTTTTTCAAGAAC
AAGCAGAATCCAATTTAATCTAGGCTTTATGCCAAAAGTTATTTTTATTT
TCTCTTTAATTTCAGAACTAGTCAATCATCAACATCAACTTCAACAAGGA
CAAGTTCATTTGTAAATACTCACACAAGAAATGATGCACCAGTGTAAGCT
TTAAGTTTTTTTGATAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTTTAATTTTAGAA
CTAGTCAATCATCAACATCAACTTCAACAAGGACAAGTTCATTTGTAAAT
ACTCACACAAGAAATGATGCACCAGTGTAAGCTTTAAGTTTTTTTGATAG
ATGATATTATTTACTTTTAGCCAGATTGATTCCTCATTTTGTTGTTTTAA
TGAACCTAAACTGTAAAGTACGGTAAGCTGGTCAGCTGGCAAAAAGATAT
CTGAACATTTCAGGTGTTTATTTATTAGTGAGGACCACTTTGTTCCAAAA
ACATCCTTCGTGTGTACAGTTTTGTTAGATGCAAACTAATTTAGTTAGTT
GTTGATTTTAATCCATTTTCCTTCAACTTGTTCCAACGCGATGTCATAAC
TTGATATTGAAAATTATTAGAGGATGGGGCTTAATTGGGGGAAATACGGT
AAGGCCTAAATGAATTTTGTTTTCATAAGGATCCCATCAGCAATTGTGTT
GTTGACTCAAAAACATTAGGTTCATTTGAAAGAGGACCTTGTGAACAAAA
AGAATATTATTACGAAAAACTAGCCTAGTTAAAAACAATAAGTATCATGC
CAAATTTGCATTCATTTAATTTTTAGAGCCATGCCATTACAACCAAGGAT
TTCAACTGGTACCCAACCAAGCTCAGAAATTATGGATATAACTTCAACTT
TGTAGGTTGATCATTGGTGGTTACACCCCGTTTTATTTAAATTTCTGGAA
TCCTTTGGTAACGTAACTAAAAAGAAGAGAATTTGAAAATTTTGATACGG
TGGTTGTCTGTACGAGGAACAATTATGAAAGGAATGTTTAGATTGAAGCC
TTCAATATAAAGTGTCTATTTTACATAACCCACTCAACATTTTACTGAGT
TGTCTAGAATTTACAGCTGAAGATAAGCCTTTAAAACTGTAATCGCCATT
TTAGATCTGTGTTCTCAAGAAATACAGGTCAGACTGGTTCTCAGCAACAT
TCTGTTTCTGCTTCCTTGCCAGTACTAACTGCGTGGTAAGGGGAGGATGA
AGGCAAATCATCATTCAATACCAGCGCCTAGCCCCTCCCATCAAGAAACG
ACTGCGCACTTACACTTATATAAAATTTAATTTTTCTTTTAGCTCAATGG
CTGCTGATACGGATGATGTCATCACCTCAGGACTCGCAGACTCAGTGTCC
AAATATAACGCTATGTAAGACTAAAATATTTCAATAATAGTGCTCTGTAT
TGGTAAAATATGTTTACAATTTCAACCCCATATGAAATTACCCAACCCTA
ATCAACCTACTTTTTTTCTTTTTACTTTTTTCATAATAGTGAGGTGGTGA
AAACATGATTTTCGGTGGAAATCTTTTTAGCAAATTTAGACGAAGAACTG
CTTAACAATTTGGTTTTTTTCGACTGGTTTTTTTTATCATTTTTGTAAAT
GGTCCTTTAAAAATGCCATTGTGAAAACGATTTTTTCCAAAAGAATCTTT
TGGGCTCAAAAAATTATTTTTAGCCATAAGGAAGGATCAAAGCATAAATC
ATAGTAGGCTACGATGCATAAATCAATGTTGGGTCTTAACTGAATTATTT
CTAATTTGCATGAGATGGATCAATTTTACTAATGAAATTGTATTTCTACA
AATTATGTGAGTTGTTTGGTTTGAAATTTTCTGATTTGCTTTGCTTTCAT
TTTCATTTCCCTTCCAAATTTACCATTATATTACCTTTTTTCCATAGGAA
AGCAACTGTAAAGGAATGGGAAAAGTGTGATATCTGTGAGGAGGTTATCG
AAGACTCTCCCTCTCATATGATGCGTTGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024137	XLOC_024137	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002229	supercontig	sc0002229:11513..14392 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.722115	0.822779	0	0	0	0	0	0	0	0.41904	0.367497	0.231728	0	0	0.410914	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00039879 vs. Swiss-Prot (Human)

BLAST of TCONS_00039879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00039879 (transcript) - C. hemisphaerica