TCONS_00039877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039877
Unique NameTCONS_00039877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039877 ID=TCONS_00039877|Name=TCONS_00039877|organism=Clytia hemisphaerica|type=transcript|length=364bp
CAACAAGGACAAGTTCATTTGTAAATACTCACACAAGAAATGATGCACCA
GTAACTAGTCAATCATCAACATCAACTTCAACAAGGACAAGTTCATTTGT
AAATACTCACACAAGAAATGATGCACCAGTAGCCATGCCATTACAACCAA
GGATTTCAACTGGTACCCAACCAAGCTCAGAAATTATGGATATAACTTCA
ACTTTGTAGctcAATGGCTGCTGATACGGATGATGTCATCACCTCAGGAC
TCGCAGACTCAGTGTCCAAATATAACGCTATGAAAGCAACTGTAAAGGAA
TGGGAAAAGTGTGATATCTGTGAGGAGGTTATCGAAGACTCTCCCTCTCA
TATGATGCGTTGCA
Run BLAST on NCBI

transcript from alignment at sc0002229:11513..14106-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039877 ID=TCONS_00039877|Name=TCONS_00039877|organism=Clytia hemisphaerica|type=transcript|length=2594bp|location=Sequence derived from alignment at sc0002229:11513..14106- (Clytia hemisphaerica)
CAACAAGGACAAGTTCATTTGTAAATACTCACACAAGAAATGATGCACCA
GTGTAAGTTTTAAGTTTTTTTGATAGATGATATTATTTACTTTTAGCCAG
ATTGATTCCTCATTTTGTTGTTTTTATGAACCTAAACTGTAAAGTTGGGT
GAGCTGATCAAATTTTTAGGATTTGCCCCCAATTTCTTTCATCTATTAAA
ATTGAGGATTTCAAACCCCCCACCTGCATTCAAGAGTGACCTTTTGATTA
GGGAAGCACTATGATGACAAATTAGTTTTTCTTTTTTCTCAAAAAAGGCC
CTTTTTTCAAGAACAAGCAGAATCCAATTTAATCTAGGCTTTATGCCAAA
AGTTATTTTTATTTTCTCTTTAATTTCAGAACTAGTCAATCATCAACATC
AACTTCAACAAGGACAAGTTCATTTGTAAATACTCACACAAGAAATGATG
CACCAGTGTAAGCTTTAAGTTTTTTTGATAGATANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCT
CTTTAATTTTAGAACTAGTCAATCATCAACATCAACTTCAACAAGGACAA
GTTCATTTGTAAATACTCACACAAGAAATGATGCACCAGTGTAAGCTTTA
AGTTTTTTTGATAGATGATATTATTTACTTTTAGCCAGATTGATTCCTCA
TTTTGTTGTTTTAATGAACCTAAACTGTAAAGTACGGTAAGCTGGTCAGC
TGGCAAAAAGATATCTGAACATTTCAGGTGTTTATTTATTAGTGAGGACC
ACTTTGTTCCAAAAACATCCTTCGTGTGTACAGTTTTGTTAGATGCAAAC
TAATTTAGTTAGTTGTTGATTTTAATCCATTTTCCTTCAACTTGTTCCAA
CGCGATGTCATAACTTGATATTGAAAATTATTAGAGGATGGGGCTTAATT
GGGGGAAATACGGTAAGGCCTAAATGAATTTTGTTTTCATAAGGATCCCA
TCAGCAATTGTGTTGTTGACTCAAAAACATTAGGTTCATTTGAAAGAGGA
CCTTGTGAACAAAAAGAATATTATTACGAAAAACTAGCCTAGTTAAAAAC
AATAAGTATCATGCCAAATTTGCATTCATTTAATTTTTAGAGCCATGCCA
TTACAACCAAGGATTTCAACTGGTACCCAACCAAGCTCAGAAATTATGGA
TATAACTTCAACTTTGTAGGTTGATCATTGGTGGTTACACCCCGTTTTAT
TTAAATTTCTGGAATCCTTTGGTAACGTAACTAAAAAGAAGAGAATTTGA
AAATTTTGATACGGTGGTTGTCTGTACGAGGAACAATTATGAAAGGAATG
TTTAGATTGAAGCCTTCAATATAAAGTGTCTATTTTACATAACCCACTCA
ACATTTTACTGAGTTGTCTAGAATTTACAGCTGAAGATAAGCCTTTAAAA
CTGTAATCGCCATTTTAGATCTGTGTTCTCAAGAAATACAGGTCAGACTG
GTTCTCAGCAACATTCTGTTTCTGCTTCCTTGCCAGTACTAACTGCGTGG
TAAGGGGAGGATGAAGGCAAATCATCATTCAATACCAGCGCCTAGCCCCT
CCCATCAAGAAACGACTGCGCACTTACACTTATATAAAATTTAATTTTTC
TTTTAGCTCAATGGCTGCTGATACGGATGATGTCATCACCTCAGGACTCG
CAGACTCAGTGTCCAAATATAACGCTATGTAAGACTAAAATATTTCAATA
ATAGTGCTCTGTATTGGTAAAATATGTTTACAATTTCAACCCCATATGAA
ATTACCCAACCCTAATCAACCTACTTTTTTTCTTTTTACTTTTTTCATAA
TAGTGAGGTGGTGAAAACATGATTTTCGGTGGAAATCTTTTTAGCAAATT
TAGACGAAGAACTGCTTAACAATTTGGTTTTTTTCGACTGGTTTTTTTTA
TCATTTTTGTAAATGGTCCTTTAAAAATGCCATTGTGAAAACGATTTTTT
CCAAAAGAATCTTTTGGGCTCAAAAAATTATTTTTAGCCATAAGGAAGGA
TCAAAGCATAAATCATAGTAGGCTACGATGCATAAATCAATGTTGGGTCT
TAACTGAATTATTTCTAATTTGCATGAGATGGATCAATTTTACTAATGAA
ATTGTATTTCTACAAATTATGTGAGTTGTTTGGTTTGAAATTTTCTGATT
TGCTTTGCTTTCATTTTCATTTCCCTTCCAAATTTACCATTATATTACCT
TTTTTCCATAGGAAAGCAACTGTAAAGGAATGGGAAAAGTGTGATATCTG
TGAGGAGGTTATCGAAGACTCTCCCTCTCATATGATGCGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024137XLOC_024137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039877-exon-sc0002229-1575043694:14055..14106TCONS_00039877-exon-sc0002229-1575043694:14055..14106Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1575043694:13710..13727TCONS_00039877-exon-sc0002229-1575043694:13710..13727Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1575043694:13217..13276TCONS_00039877-exon-sc0002229-1575043694:13217..13276Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1575043694:12638..12716TCONS_00039877-exon-sc0002229-1575043694:12638..12716Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1575043694:12129..12200TCONS_00039877-exon-sc0002229-1575043694:12129..12200Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1575043694:11513..11595TCONS_00039877-exon-sc0002229-1575043694:11513..11595Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1510915933:14055..14106TCONS_00039877-exon-sc0002229-1510915933:14055..14106Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1510915933:13710..13727TCONS_00039877-exon-sc0002229-1510915933:13710..13727Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1510915933:13217..13276TCONS_00039877-exon-sc0002229-1510915933:13217..13276Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1510915933:12638..12716TCONS_00039877-exon-sc0002229-1510915933:12638..12716Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1510915933:12129..12200TCONS_00039877-exon-sc0002229-1510915933:12129..12200Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1510915933:11513..11595TCONS_00039877-exon-sc0002229-1510915933:11513..11595Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1491911889:14055..14106TCONS_00039877-exon-sc0002229-1491911889:14055..14106Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1491911889:13710..13727TCONS_00039877-exon-sc0002229-1491911889:13710..13727Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1491911889:13217..13276TCONS_00039877-exon-sc0002229-1491911889:13217..13276Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1491911889:12638..12716TCONS_00039877-exon-sc0002229-1491911889:12638..12716Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1491911889:12129..12200TCONS_00039877-exon-sc0002229-1491911889:12129..12200Clytia hemisphaericaexon
TCONS_00039877-exon-sc0002229-1491911889:11513..11595TCONS_00039877-exon-sc0002229-1491911889:11513..11595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002229supercontigsc0002229:11513..14106 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52516	1.81532	0.268817	0	0	0	0	0	0	0	0	0.640897	0.824272	0	0	0	0.958653	1.17412	0	0	0	1.2766	0	0	0	0	0	0.334951	1.03513	0.047144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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