TCONS_00039872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039872
Unique NameTCONS_00039872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039872 ID=TCONS_00039872|Name=TCONS_00039872|organism=Clytia hemisphaerica|type=transcript|length=390bp
TTCTATATAGCTGTTGTTAGacgcacgtcaggtcgaattataaatatatc
aaaaatctGAAATGTGACCAGTGCTCGTGGCACGATGGAGAGAGCGTTGG
TCTAGTGGTTATGTCATTTTTTCACGAGTGGGTTCGAACCCCCGAAaagt
caaaagttttgaaaaaagatgaagaaaGACCTAGCTAGCTTGTACTCACA
TGGCGAGATGCGAGATGGATAGGACTGGATAGGTCAAAGAGGAGCTAAAA
ACACACAGCACAGTATGATTCAGGGATGAGTATGATTTGGCTTGTTGTAA
CTTGATAAAGATTGATATTTGGATAACACACTGATGCCACAACTTTTCAT
GGATTTGTCAAACTCAACAAGGCATTTGTTAGGTAAGGTT
Run BLAST on NCBI

transcript from alignment at sc0002227:18080..18469

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039872 ID=TCONS_00039872|Name=TCONS_00039872|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0002227:18080..18469 (Clytia hemisphaerica)
AACCTTACCTAACAAATGCCTTGTTGAGTTTGACAAATCCATGAAAAGTT
GTGGCATCAGTGTGTTATCCAAATATCAATCTTTATCAAGTTACAACAAG
CCAAATCATACTCATCCCTGAATCATACTGTGCTGTGTGTTTTTAGCTCC
TCTTTGACCTATCCAGTCCTATCCATCTCGCATCTCGCCATGTGAGTACA
AGCTAGCTAGGTCtttcttcatcttttttcaaaacttttgacttTTCGGG
GGTTCGAACCCACTCGTGAAAAAATGACATAACCACTAGACCAACGCTCT
CTCCATCGTGCCACGAGCACTGGTCACATTTCagatttttgatatattta
taattcgacctgacgtgcgtCTAACAACAGCTATATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024133XLOC_024133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039872-exon-sc0002227-1491911889:18080..18469TCONS_00039872-exon-sc0002227-1491911889:18080..18469Clytia hemisphaericaexon
TCONS_00039872-exon-sc0002227-1510915933:18080..18469TCONS_00039872-exon-sc0002227-1510915933:18080..18469Clytia hemisphaericaexon
TCONS_00039872-exon-sc0002227-1575043694:18080..18469TCONS_00039872-exon-sc0002227-1575043694:18080..18469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002227supercontigsc0002227:18080..18469 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.262265	0.431351	1.49433	0.559486	2.34793	1.79715	1.22342	1.34025	0.852342	1.82092	0.962251	0.268419	0	0	0	0	0	0	0	0	0	0	0.299457	2.09415	0	0	0.435111	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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