TCONS_00039867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039867
Unique NameTCONS_00039867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039867 ID=TCONS_00039867|Name=TCONS_00039867|organism=Clytia hemisphaerica|type=transcript|length=281bp
TTATTGTCAAAAAACTTGTTAGTCGCCAatgaatatattttctttttctg
accATTGTATGTGTCTTTCATCCTTTTAGCAAAGGCTTGTGAAGGTGTTG
CAGCAAGGTCATTATTGTGGTATGATGCAAAAGCTTCAACCAACAATGAA
CACAATGGTTGTAGTTCAGCAGTAATCTTCCATACCAGACCATGCAATTG
TTTCCCATCCATGTCATTTGTTCATAAGTTTCATTGTCTTTATTATAGAT
AATATGCTTGTGTACTGTTTGTTATTGCTAC
Run BLAST on NCBI

transcript from alignment at sc0002223:6842..7122

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039867 ID=TCONS_00039867|Name=TCONS_00039867|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at sc0002223:6842..7122 (Clytia hemisphaerica)
GTAGCAATAACAAACAGTACACAAGCATATTATCTATAATAAAGACAATG
AAACTTATGAACAAATGACATGGATGGGAAACAATTGCATGGTCTGGTAT
GGAAGATTACTGCTGAACTACAACCATTGTGTTCATTGTTGGTTGAAGCT
TTTGCATCATACCACAATAATGACCTTGCTGCAACACCTTCACAAGCCTT
TGCTAAAAGGATGAAAGACACATACAATggtcagaaaaagaaaatatatt
catTGGCGACTAACAAGTTTTTTGACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024128XLOC_024128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039867-exon-sc0002223-1491911889:6842..7122TCONS_00039867-exon-sc0002223-1491911889:6842..7122Clytia hemisphaericaexon
TCONS_00039867-exon-sc0002223-1510915933:6842..7122TCONS_00039867-exon-sc0002223-1510915933:6842..7122Clytia hemisphaericaexon
TCONS_00039867-exon-sc0002223-1575043694:6842..7122TCONS_00039867-exon-sc0002223-1575043694:6842..7122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002223supercontigsc0002223:6842..7122 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.487968	0	0.552502	0	0.658052	4.68002	1.88208	1.17465	0.822403	1.01868	1.97751	2.92486	0.324532	0.67406	2.21668	0.892062	0	0.375462	0	1.62841	0	0	0.559495	2.03465	4.19128	2.33788	2.0073	2.14225	0	1.10362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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