TCONS_00039832 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039832
Unique NameTCONS_00039832
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1088

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039832 ID=TCONS_00039832|Name=TCONS_00039832|organism=Clytia hemisphaerica|type=transcript|length=1088bp
ATAAGATTGCCATGAAAAAAGCAAATGAGAATTGGGGACAACTCTCAGAT
ATTGAGAAAAAGTCATACGAAGAAGAAGCTGCATCAATCGTTGTTGCGGG
ATTTGATGACTTGCCAGTAGAAGAGCAAAAAGCAAGAATCAACGAGATca
ggaaaaaaatgaatataatgTGCCAAGAGCTTGAAAGTTATGGAGTGGAG
ATACTCGTTATGAATTATGACCTCAATGATGAAAGGGCTATGAAAGAGGG
AGTTAATTCATTCGGAAGTAACAGATCTGCCGACTTCCTTGAGGCTAATG
ACCGATTGGAATGGAGATTTGCTCAATTTATGGACGAAGTAACATCTAAA
GCTGTTCAGATAATGCAAGAACCTTTCCCAAAAGAAAGGAAACTAGTTGC
AGACATGTTAAACAGTAAAATTCGCCTATTGAAAATAGGAAGAACGACGG
TGCCTTACAAAGCTATCGCTGATGGGATTGTGGAAGTGCATGGGCTACCT
GAAGGCTTCCAATTTAGAAACCCAACTTTGTTATCGAAGTCGGAATTGAC
GACAATAAAGGACAATATTGATAACATATCTTTCGTGTTTCCCAAACCGA
GCTGTCAAACTGAAGACTTGACCGAAAGCAACGCTGTAAATGAGACACTA
NGtcgaaaaaacaaaatagttGGCATCCTTAtaacatttttcgaaaaata
tatatcACGCATTCGATATCACAGGTCGTTCGTTTGTGCGTAGTCTTGTT
CGCGCCTAGTCTTTTTCATTTATCTGTGAATACCATTGGAAAATGACTGG
ATCTTGAAagattttataaagtttttttctgaaatcgtAATATATAAGTG
TCGATTTTAATATGATATTTCAttcttgtatatttttatatgaCGAGTAT
AATCAGGGATCTGAGTTTGTTTGAGGGCGTAAAGTCAGTTAGCGTCATCA
TTTTTCGTGTAGCTCTATTATTACTATCATATGTCCTAACATTGTATGTA
TATATTTTAAAGAAATGTAGCTTTTGTATTTTcctatatatattttcttc
ttGTTTAAAAAGATGAAGAACAAAATACAATATCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00039832-protein

>TCONS_00039832-protein ID=TCONS_00039832-protein|Name=TCONS_00039832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
KIAMKKANENWGQLSDIEKKSYEEEAASIVVAGFDDLPVEEQKARINEIR
KKMNIMCQELESYGVEILVMNYDLNDERAMKEGVNSFGSNRSADFLEAND
RLEWRFAQFMDEVTSKAVQIMQEPFPKERKLVADMLNSKIRLLKIGRTTV
PYKAIADGIVEVHGLPEGFQFRNPTLLSKSELTTIKDNIDNISFVFPKPS
CQTEDLTESNAVNETLXRKNKIVGILITFFEKYISRIRYHRSFVCA
Run BLAST on NCBI

transcript from alignment at sc0002214:6811..8774-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039832 ID=TCONS_00039832|Name=TCONS_00039832|organism=Clytia hemisphaerica|type=transcript|length=1964bp|location=Sequence derived from alignment at sc0002214:6811..8774- (Clytia hemisphaerica)
ATAAGATTGCCATGAAAAAAGCAAATGAGAATTGGGGACAACTCTCAGAT
ATTGAGAAAAAGTCATACGAAGAAGAAGCTGCATCAATCGTTGTTGCGGG
ATTTGATGACTTGCCAGTAGAAGAGCAAAAAGCAAGAATCAACGAGATCA
GGAAAAAAATGAATATAATGGTATGTAAAAATAAATTTCAAAATATTTTT
CTTATAAAATTCGTTCAATGCTCCGTGGAGGAAGAAATAAGTAATAAACA
GTAATAAACACATCAGATTCATGGTCAAAACCATGGAGTGGGTTAGCTCA
TATAAGCTTTTTAAATCCGATCATTGTTTTCCATAGTATATTTATCATTC
TTCTAATTTAGTACGATGGTATTATTTCAGCCGAGTTGTAGGAATTTATC
TCCTTTCATTATGTAGTACGAGTCCATATTTACAAATATAACAATTTTCT
GATTTTATCTACGGTTAAATTTTATATAAAACCATCTTTTTTCGCAACTC
AGTGCCAAGAGCTTGAAAGTTATGGAGTGGAGATACTCGTTATGAATTAT
GACCTCAATGATGAAAGGGCTATGAAAGAGGGAGTTAATTCATTCGGAAG
TAACAGATCTGCCGACTTCCTTGAGGCTAATGACCGATTGGAATGGAGAT
TTGCTCAATTTATGGACGGTGAGTGTGGGCACTTATTTATAAGAACTATT
AAAAATCTTGTTACTATAAAACAATCTCTTTGAACAACAAAATTTGGTAT
GTATCTCTATAACGCTGCAATGTGAATATGCTCATTCTTTTATTGCAGAA
GTAACATCTAAAGCTGTTCAGATAATGCAAGAACCTTTCCCAAAAGAAAG
GAAACTAGTTGCAGACATGTTAAACAGTAAAATTCGTATGTCGTTTTATT
TTGTCCGTTAATTTTGAAAATAAAACGACGGAACAAGATATAGTATTTTT
ACTTTGAAAGCCCTTATAACTCATGGAATGCTTAGAATTAAAATTTTCTT
ATTTTTTTTTTCATGAGTAAGTATAAACTTTTCAAATTCATTTGTATGAC
TCGTACTTCTTTTTCTATTTAAACTGGTTTAGGCCTATTGAAAATAGGAA
GAACGACGGTGCCTTACAAAGCTATCGCTGATGGGATTGTGGAAGTGCAT
GGGCTACCTGAAGGCTTCCAATTTAGAAACCCAACTTTGTTATCGAAGTC
GGAATTGACGACAATAAAGGACAATATTGATAACATATCTTTCGTGTGTA
CGTTAAAATTTTAAATTTTTGTTTCTTTTACCACATTTCCAGAGCTTTTT
GTGGATTTAATTAAAATCGTTTTTAGTAATCAAAATTCCAAGAGATTCGA
GATGACCATTAGAACCTCATTTTGCTTCTTGCCGACCTTTGCATGTACCC
TTATTCTTAAAATCAGCAACCATTTTTTAAGGATCTTTTTTATTGTGTTC
TTAACTTTTTCCAGTTCCCAAACCGAGCTGTCAAACTGAAGACTTGACCG
AAAGCAACGCTGTAAATGAGACACTANGTCGAAAAAACAAAATAGTTGGC
ATCCTTATAACATTTTTCGAAAAATATATATCACGCATTCGATATCACAG
GTCGTTCGTTTGTGCGTAGTCTTGTTCGCGCCTAGTCTTTTTCATTTATC
TGTGAATACCATTGGAAAATGACTGGATCTTGAAAGATTTTATAAAGTTT
TTTTCTGAAATCGTAATATATAAGTGTCGATTTTAATATGATATTTCATT
CTTGTATATTTTTATATGACGAGTATAATCAGGGATCTGAGTTTGTTTGA
GGGCGTAAAGTCAGTTAGCGTCATCATTTTTCGTGTAGCTCTATTATTAC
TATCATATGTCCTAACATTGTATGTATATATTTTAAAGAAATGTAGCTTT
TGTATTTTCCTATATATATTTTCTTCTTGTTTAAAAAGATGAAGAACAAA
ATACAATATCAAAA

Coding sequence (CDS) from alignment at sc0002214:6811..8774-

>TCONS_00039832 ID=TCONS_00039832|Name=TCONS_00039832|organism=Clytia hemisphaerica|type=CDS|length=3705bp|location=Sequence derived from alignment at sc0002214:6811..8774- (Clytia hemisphaerica)
TTCCCAAACCGAGCTGTCAAACTGAAGACTTGACCGAAAGCAACGCTGTA
AATGAGACACTANGTCGAAAAAACAAAATAGTTGGCATCCTTATAACATT
TTTCGAAAAATATATATCACGCATTCGATATCACAGGTCGTTCGTTTGTG
CGTAGGCCTATTGAAAATAGGAAGAACGACGGTGCCTTACAAAGCTATCG
CTGATGGGATTGTGGAAGTGCATGGGCTACCTGAAGGCTTCCAATTTAGA
AACCCAACTTTGTTATCGAAGTCGGAATTGACGACAATAAAGGACAATAT
TGATAACATATCTTTCGTGTAAGTAACATCTAAAGCTGTTCAGATAATGC
AAGAACCTTTCCCAAAAGAAAGGAAACTAGTTGCAGACATGTTAAACAGT
AAAATTCTGCCAAGAGCTTGAAAGTTATGGAGTGGAGATACTCGTTATGA
ATTATGACCTCAATGATGAAAGGGCTATGAAAGAGGGAGTTAATTCATTC
GGAAGTAACAGATCTGCCGACTTCCTTGAGGCTAATGACCGATTGGAATG
GAGATTTGCTCAATTTATGGACGAAGATTGCCATGAAAAAAGCAAATGAG
AATTGGGGACAACTCTCAGATATTGAGAAAAAGTCATACGAAGAAGAAGC
TGCATCAATCGTTGTTGCGGGATTTGATGACTTGCCAGTAGAAGAGCAAA
AAGCAAGAATCAACGAGATCAGGAAAAAAATGAATATAATGTTCCCAAAC
CGAGCTGTCAAACTGAAGACTTGACCGAAAGCAACGCTGTAAATGAGACA
CTANGTCGAAAAAACAAAATAGTTGGCATCCTTATAACATTTTTCGAAAA
ATATATATCACGCATTCGATATCACAGGTCGTTCGTTTGTGCGTAGGCCT
ATTGAAAATAGGAAGAACGACGGTGCCTTACAAAGCTATCGCTGATGGGA
TTGTGGAAGTGCATGGGCTACCTGAAGGCTTCCAATTTAGAAACCCAACT
TTGTTATCGAAGTCGGAATTGACGACAATAAAGGACAATATTGATAACAT
ATCTTTCGTGTAAGTAACATCTAAAGCTGTTCAGATAATGCAAGAACCTT
TCCCAAAAGAAAGGAAACTAGTTGCAGACATGTTAAACAGTAAAATTCTG
CCAAGAGCTTGAAAGTTATGGAGTGGAGATACTCGTTATGAATTATGACC
TCAATGATGAAAGGGCTATGAAAGAGGGAGTTAATTCATTCGGAAGTAAC
AGATCTGCCGACTTCCTTGAGGCTAATGACCGATTGGAATGGAGATTTGC
TCAATTTATGGACGAAGATTGCCATGAAAAAAGCAAATGAGAATTGGGGA
CAACTCTCAGATATTGAGAAAAAGTCATACGAAGAAGAAGCTGCATCAAT
CGTTGTTGCGGGATTTGATGACTTGCCAGTAGAAGAGCAAAAAGCAAGAA
TCAACGAGATCAGGAAAAAAATGAATATAATGTTCCCAAACCGAGCTGTC
AAACTGAAGACTTGACCGAAAGCAACGCTGTAAATGAGACACTANGTCGA
AAAAACAAAATAGTTGGCATCCTTATAACATTTTTCGAAAAATATATATC
ACGCATTCGATATCACAGGTCGTTCGTTTGTGCGTAGGCCTATTGAAAAT
AGGAAGAACGACGGTGCCTTACAAAGCTATCGCTGATGGGATTGTGGAAG
TGCATGGGCTACCTGAAGGCTTCCAATTTAGAAACCCAACTTTGTTATCG
AAGTCGGAATTGACGACAATAAAGGACAATATTGATAACATATCTTTCGT
GTAAGTAACATCTAAAGCTGTTCAGATAATGCAAGAACCTTTCCCAAAAG
AAAGGAAACTAGTTGCAGACATGTTAAACAGTAAAATTCTGCCAAGAGCT
TGAAAGTTATGGAGTGGAGATACTCGTTATGAATTATGACCTCAATGATG
AAAGGGCTATGAAAGAGGGAGTTAATTCATTCGGAAGTAACAGATCTGCC
GACTTCCTTGAGGCTAATGACCGATTGGAATGGAGATTTGCTCAATTTAT
GGACGAAGATTGCCATGAAAAAAGCAAATGAGAATTGGGGACAACTCTCA
GATATTGAGAAAAAGTCATACGAAGAAGAAGCTGCATCAATCGTTGTTGC
GGGATTTGATGACTTGCCAGTAGAAGAGCAAAAAGCAAGAATCAACGAGA
TCAGGAAAAAAATGAATATAATGTTCCCAAACCGAGCTGTCAAACTGAAG
ACTTGACCGAAAGCAACGCTGTAAATGAGACACTANGTCGAAAAAACAAA
ATAGTTGGCATCCTTATAACATTTTTCGAAAAATATATATCACGCATTCG
ATATCACAGGTCGTTCGTTTGTGCGTAGGCCTATTGAAAATAGGAAGAAC
GACGGTGCCTTACAAAGCTATCGCTGATGGGATTGTGGAAGTGCATGGGC
TACCTGAAGGCTTCCAATTTAGAAACCCAACTTTGTTATCGAAGTCGGAA
TTGACGACAATAAAGGACAATATTGATAACATATCTTTCGTGTAAGTAAC
ATCTAAAGCTGTTCAGATAATGCAAGAACCTTTCCCAAAAGAAAGGAAAC
TAGTTGCAGACATGTTAAACAGTAAAATTCTGCCAAGAGCTTGAAAGTTA
TGGAGTGGAGATACTCGTTATGAATTATGACCTCAATGATGAAAGGGCTA
TGAAAGAGGGAGTTAATTCATTCGGAAGTAACAGATCTGCCGACTTCCTT
GAGGCTAATGACCGATTGGAATGGAGATTTGCTCAATTTATGGACGAAGA
TTGCCATGAAAAAAGCAAATGAGAATTGGGGACAACTCTCAGATATTGAG
AAAAAGTCATACGAAGAAGAAGCTGCATCAATCGTTGTTGCGGGATTTGA
TGACTTGCCAGTAGAAGAGCAAAAAGCAAGAATCAACGAGATCAGGAAAA
AAATGAATATAATGTTCCCAAACCGAGCTGTCAAACTGAAGACTTGACCG
AAAGCAACGCTGTAAATGAGACACTANGTCGAAAAAACAAAATAGTTGGC
ATCCTTATAACATTTTTCGAAAAATATATATCACGCATTCGATATCACAG
GTCGTTCGTTTGTGCGTAGGCCTATTGAAAATAGGAAGAACGACGGTGCC
TTACAAAGCTATCGCTGATGGGATTGTGGAAGTGCATGGGCTACCTGAAG
GCTTCCAATTTAGAAACCCAACTTTGTTATCGAAGTCGGAATTGACGACA
ATAAAGGACAATATTGATAACATATCTTTCGTGTAAGTAACATCTAAAGC
TGTTCAGATAATGCAAGAACCTTTCCCAAAAGAAAGGAAACTAGTTGCAG
ACATGTTAAACAGTAAAATTCTGCCAAGAGCTTGAAAGTTATGGAGTGGA
GATACTCGTTATGAATTATGACCTCAATGATGAAAGGGCTATGAAAGAGG
GAGTTAATTCATTCGGAAGTAACAGATCTGCCGACTTCCTTGAGGCTAAT
GACCGATTGGAATGGAGATTTGCTCAATTTATGGACGAAGATTGCCATGA
AAAAAGCAAATGAGAATTGGGGACAACTCTCAGATATTGAGAAAAAGTCA
TACGAAGAAGAAGCTGCATCAATCGTTGTTGCGGGATTTGATGACTTGCC
AGTAGAAGAGCAAAAAGCAAGAATCAACGAGATCAGGAAAAAAATGAATA
TAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024108XLOC_024108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039832-exon-sc0002214-1575043694:8605..8774TCONS_00039832-exon-sc0002214-1575043694:8605..8774Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1575043694:8107..8272TCONS_00039832-exon-sc0002214-1575043694:8107..8272Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1575043694:7890..7976TCONS_00039832-exon-sc0002214-1575043694:7890..7976Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1575043694:7528..7692TCONS_00039832-exon-sc0002214-1575043694:7528..7692Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1575043694:6811..7310TCONS_00039832-exon-sc0002214-1575043694:6811..7310Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1510915933:8605..8774TCONS_00039832-exon-sc0002214-1510915933:8605..8774Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1510915933:8107..8272TCONS_00039832-exon-sc0002214-1510915933:8107..8272Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1510915933:7890..7976TCONS_00039832-exon-sc0002214-1510915933:7890..7976Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1510915933:7528..7692TCONS_00039832-exon-sc0002214-1510915933:7528..7692Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1510915933:6811..7310TCONS_00039832-exon-sc0002214-1510915933:6811..7310Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1491911889:8605..8774TCONS_00039832-exon-sc0002214-1491911889:8605..8774Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1491911889:8107..8272TCONS_00039832-exon-sc0002214-1491911889:8107..8272Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1491911889:7890..7976TCONS_00039832-exon-sc0002214-1491911889:7890..7976Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1491911889:7528..7692TCONS_00039832-exon-sc0002214-1491911889:7528..7692Clytia hemisphaericaexon
TCONS_00039832-exon-sc0002214-1491911889:6811..7310TCONS_00039832-exon-sc0002214-1491911889:6811..7310Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039832-proteinTCONS_00039832-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002214supercontigsc0002214:6811..8774 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.28253	0	0	0	2.49859	2.72464	1.51996	1.79917	1.23783	1.46847	0.38238	0.269384	0.775213	0.763428	0.791862	1.25218	2.00437	2.86719	0.858103	0.54672	0.827535	1.39193	0.694165	0.786857	0.78539	1.17989	0.517522	0.413449	0.806366	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004212GTF2I
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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