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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039796 ID=TCONS_00039796|Name=TCONS_00039796|organism=Clytia hemisphaerica|type=transcript|length=1845bp
TGAGTGATCAATTGGGCAAAGGATCGGCTAACTTTGAGAATGAAAAGTAC
AGCCAAATCAGATAGTCGTTGACGAATGAAAGTATAACGTGCTATACAAG
TATAGAGAGCAGTTGCTAACAGCAGAAGAAAATACAACAGCAAAATGTAC
GCTGCAAAAATCAATCAACGATTCAGAAGCTTAAATGCAAATGCCAGAGC
GGCAGTGAGAGAAGAGCTGCAGGAACGTGTGCGAAGTAATCACCAATTCG
TAATCAGGCAGAACTCGTCCCTCTCATGGTTCACACCACGTTGGTACCTA
TGGTTCATGTACCACACAATGCAGGGTGAATTGAACTTGATGGGATACGG
ATCACGCCCCTTACCATTTGGAGGATTCGTGAACAATCCACACTATCAGG
AACTATTTGCGAGAGCTGGCAGCATAGTGGAGAGGGAGCATCAAAGAATT
TTAAGACGGGTCCGAAGGAGAGGAACAGTACGTGTGGACCTCACACGATT
CATATCCTGGACGGACGAACAATTCATCATGCGACCACTGGCCAGACGCA
CCGGTAATGGAGCTGATGGATTGTCACGTAATCGAGTTATAAGGGATTGG
ACGCGCGGGACAAACGTTTCTCTTCGCAACACAAACGACGAACGCGCGAC
GAACGAACCGTGTTGCGCAGTTTGCATGGACCAGATTGGCAACAGCGACA
TGCAAACCAGTTGCTGTGGACAGCCAGCATTCTGCAGGAATTGTTTGGGC
ATTTATATGGATTTGTCATCGGACAGCACTTATCCTGTGGCAAAGCGTTG
CCCACTGTGCAACCGGGAGTGGCCTGACGGTCCAATAATGGTGCCAAGAC
AAGAACAACaataaaccaaaaacattgtagtattttatattagaaaatta
ttatttatttagttttagAATTTATCTTTGACGAAATCTTGTAACGAGGA
CgtcacatttttttttgttgggGGTTGTCAGGCTGccatattttatttta
atttttctctcaTTTTGCGTATAATATTTCTCAtcccttttttttttaca
ttgaattctATTTTAGCATCTTAGCCTTTTGCTGATTTCGAAAGTTTTTC
CTTTACATCTTTCTGGGATTCCTCTTTCACATACGTTACATAATCTTTGG
TGCCTCTATTTGTTTGATACTTCATTTCCATTTGATGCCTTCCCAAAGCG
TGTTTACGTTTAAATGTGTAATCTTGCTTGACTACCATTTCAATGTGTGC
TTACGTTAAGTAAATACACCGTTGTCTTTTTCATCAGGAACATATTCATC
TGTGTATTGCTACTCGCCTTCCTTCGGCTATATTACtcatatttcatatt
tcacCATAAATATCTGTAAGTCACAACATTCGTATTTTCTCATAAATACC
CACAAATCACAAAAATTCGTACACACGTACCTCTTGTATTTGTCATTATA
CGTTAATTAACTTCGTCGTAACCCTGACAAAGGGGAGCTTTGGGGTACTG
TCCTTGCTCAAGGGAGCCCCAGAACATTTTATAGTCCTGCTCACGACAAC
AAATGATTTCACCAAATCATATCCATACCATAACAATATCAATCAATAAG
TCAATTCCAAGAAACTTTTTAATTCAAGAAACTTCGAATGGCCATTTCAA
CTCAATGTATCATTTGACCATTCCAACCATGAAACATCTCAAATGTTCAT
GCTAAAATATTTTATGCAAATGTTCAACActgttttttttcatctttata
gCTCTCAAGCTAACTCACTCTCGTATCGCATCCCCAGAACAACACAACAA
CTTCCGAATCGTTTcgatctcggtagaacctccaAATGTCAGCCG Run BLAST on NCBI protein sequence of TCONS_00039796-protein >TCONS_00039796-protein ID=TCONS_00039796-protein|Name=TCONS_00039796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MYAAKINQRFRSLNANARAAVREELQERVRSNHQFVIRQNSSLSWFTPRW
YLWFMYHTMQGELNLMGYGSRPLPFGGFVNNPHYQELFARAGSIVEREHQ
RILRRVRRRGTVRVDLTRFISWTDEQFIMRPLARRTGNGADGLSRNRVIR
DWTRGTNVSLRNTNDERATNEPCCAVCMDQIGNSDMQTSCCGQPAFCRNC
LGIYMDLSSDSTYPVAKRCPLCNREWPDGPIMVPRQEQQ Run BLAST on NCBI transcript from alignment at sc0002202:7418..9262 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039796 ID=TCONS_00039796|Name=TCONS_00039796|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at sc0002202:7418..9262 (Clytia hemisphaerica)
CGGCTGACATTtggaggttctaccgagatcgAAACGATTCGGAAGTTGTT
GTGTTGTTCTGGGGATGCGATACGAGAGTGAGTTAGCTTGAGAGctataa
agatgaaaaaaaacagTGTTGAACATTTGCATAAAATATTTTAGCATGAA
CATTTGAGATGTTTCATGGTTGGAATGGTCAAATGATACATTGAGTTGAA
ATGGCCATTCGAAGTTTCTTGAATTAAAAAGTTTCTTGGAATTGACTTAT
TGATTGATATTGTTATGGTATGGATATGATTTGGTGAAATCATTTGTTGT
CGTGAGCAGGACTATAAAATGTTCTGGGGCTCCCTTGAGCAAGGACAGTA
CCCCAAAGCTCCCCTTTGTCAGGGTTACGACGAAGTTAATTAACGTATAA
TGACAAATACAAGAGGTACGTGTGTACGAATTTTTGTGATTTGTGGGTAT
TTATGAGAAAATACGAATGTTGTGACTTACAGATATTTATGgtgaaatat
gaaatatgaGTAATATAGCCGAAGGAAGGCGAGTAGCAATACACAGATGA
ATATGTTCCTGATGAAAAAGACAACGGTGTATTTACTTAACGTAAGCACA
CATTGAAATGGTAGTCAAGCAAGATTACACATTTAAACGTAAACACGCTT
TGGGAAGGCATCAAATGGAAATGAAGTATCAAACAAATAGAGGCACCAAA
GATTATGTAACGTATGTGAAAGAGGAATCCCAGAAAGATGTAAAGGAAAA
ACTTTCGAAATCAGCAAAAGGCTAAGATGCTAAAATagaattcaatgtaa
aaaaaaaagggaTGAGAAATATTATACGCAAAAtgagagaaaaattaaaa
taaaatatggCAGCCTGACAACCcccaacaaaaaaaaatgtgacGTCCTC
GTTACAAGATTTCGTCAAAGATAAATTctaaaactaaataaataataatt
ttctaatataaaatactacaatgtttttggtttattGTTGTTCTTGTCTT
GGCACCATTATTGGACCGTCAGGCCACTCCCGGTTGCACAGTGGGCAACG
CTTTGCCACAGGATAAGTGCTGTCCGATGACAAATCCATATAAATGCCCA
AACAATTCCTGCAGAATGCTGGCTGTCCACAGCAACTGGTTTGCATGTCG
CTGTTGCCAATCTGGTCCATGCAAACTGCGCAACACGGTTCGTTCGTCGC
GCGTTCGTCGTTTGTGTTGCGAAGAGAAACGTTTGTCCCGCGCGTCCAAT
CCCTTATAACTCGATTACGTGACAATCCATCAGCTCCATTACCGGTGCGT
CTGGCCAGTGGTCGCATGATGAATTGTTCGTCCGTCCAGGATATGAATCG
TGTGAGGTCCACACGTACTGTTCCTCTCCTTCGGACCCGTCTTAAAATTC
TTTGATGCTCCCTCTCCACTATGCTGCCAGCTCTCGCAAATAGTTCCTGA
TAGTGTGGATTGTTCACGAATCCTCCAAATGGTAAGGGGCGTGATCCGTA
TCCCATCAAGTTCAATTCACCCTGCATTGTGTGGTACATGAACCATAGGT
ACCAACGTGGTGTGAACCATGAGAGGGACGAGTTCTGCCTGATTACGAAT
TGGTGATTACTTCGCACACGTTCCTGCAGCTCTTCTCTCACTGCCGCTCT
GGCATTTGCATTTAAGCTTCTGAATCGTTGATTGATTTTTGCAGCGTACA
TTTTGCTGTTGTATTTTCTTCTGCTGTTAGCAACTGCTCTCTATACTTGT
ATAGCACGTTATACTTTCATTCGTCAACGACTATCTGATTTGGCTGTACT
TTTCATTCTCAAAGTTAGCCGATCCTTTGCCCAATTGATCACTCA Coding sequence (CDS) from alignment at sc0002202:7418..9262 >TCONS_00039796 ID=TCONS_00039796|Name=TCONS_00039796|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0002202:7418..9262 (Clytia hemisphaerica)
ttattGTTGTTCTTGTCTTGGCACCATTATTGGACCGTCAGGCCACTCCC
GGTTGCACAGTGGGCAACGCTTTGCCACAGGATAAGTGCTGTCCGATGAC
AAATCCATATAAATGCCCAAACAATTCCTGCAGAATGCTGGCTGTCCACA
GCAACTGGTTTGCATGTCGCTGTTGCCAATCTGGTCCATGCAAACTGCGC
AACACGGTTCGTTCGTCGCGCGTTCGTCGTTTGTGTTGCGAAGAGAAACG
TTTGTCCCGCGCGTCCAATCCCTTATAACTCGATTACGTGACAATCCATC
AGCTCCATTACCGGTGCGTCTGGCCAGTGGTCGCATGATGAATTGTTCGT
CCGTCCAGGATATGAATCGTGTGAGGTCCACACGTACTGTTCCTCTCCTT
CGGACCCGTCTTAAAATTCTTTGATGCTCCCTCTCCACTATGCTGCCAGC
TCTCGCAAATAGTTCCTGATAGTGTGGATTGTTCACGAATCCTCCAAATG
GTAAGGGGCGTGATCCGTATCCCATCAAGTTCAATTCACCCTGCATTGTG
TGGTACATGAACCATAGGTACCAACGTGGTGTGAACCATGAGAGGGACGA
GTTCTGCCTGATTACGAATTGGTGATTACTTCGCACACGTTCCTGCAGCT
CTTCTCTCACTGCCGCTCTGGCATTTGCATTTAAGCTTCTGAATCGTTGA
TTGATTTTTGCAGCGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039796-exon-sc0002202-1491911889:7418..9262 | TCONS_00039796-exon-sc0002202-1491911889:7418..9262 | Clytia hemisphaerica | exon |
| TCONS_00039796-exon-sc0002202-1510915933:7418..9262 | TCONS_00039796-exon-sc0002202-1510915933:7418..9262 | Clytia hemisphaerica | exon |
| TCONS_00039796-exon-sc0002202-1575043694:7418..9262 | TCONS_00039796-exon-sc0002202-1575043694:7418..9262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002202 | supercontig | sc0002202:7418..9262 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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