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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039788 ID=TCONS_00039788|Name=TCONS_00039788|organism=Clytia hemisphaerica|type=transcript|length=491bp
gttatacgtatatcTTGTCGATATACCTTTTTATACTCGCGGGCATCACA
CTTACTCCCGCCCATCCAGAAAGAAGCTTGCGCCTTCAGTGGTCTCCAGT
ctctttttgagtttcaaaagacgcggaaaaacaacaaaaagtctTCTTGA
ATTTTGGCGGccaacaagatggcggacgacTTCCACCGAAATAACCTTCT
GAAGTATAGCTGAATTTCTATAGCCAAGGATAACAGAATCCATCATCAAC
ATCAAAGCAAATGCTGCATGCAATAACCACTGGATATTTATTACAAGGAA
ATTTACTTTCAGaagctaTAATCAAAATGGCAAGCAGCAAGGAAAGATAA
CATAAAGGAGAGCTACCCAGGCAGATACCCGAGGTAAGGAGTTCAAATTA
TTGTTTATGTACGAGTATTTTCAAGATAGCAGGAGTAACACATAGCATGC
ACCCCCTGAGCTTAAGGGAGGGGCTAAACCATTGTTGCTAG Run BLAST on NCBI transcript from alignment at sc0002200:20127..22880- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039788 ID=TCONS_00039788|Name=TCONS_00039788|organism=Clytia hemisphaerica|type=transcript|length=2754bp|location=Sequence derived from alignment at sc0002200:20127..22880- (Clytia hemisphaerica)
GTTATACGTATATCTTGTCGATATACCTTTTTATACTCGCGGGCATCACA
CTTACTCCCGCCCATCCAGAAAGAAGCTTGCGCCTTCAGTGGTCTCCAGT
CTCTTTTTGAGTTTCAAAAGACGCGGAAAAACAACAAAAAGTCTTCTTGA
ATTTTGGCGGCCAACAAGATGGCGGACGACTTCCACCGAAATAACCTTCT
GAAGTATAGCTGAATTTCTATAGCCAAGGATAACAGAATCCATCATCAAG
TTAAGTATAAATTTTTCTTTATTATTACTTTGTAACTTTAGTTTGCTTTT
GAAGCCAGCAGGAAGTTTTGAGAGGAATTTTAAGTATAATTTGATAGTGG
CTTTTTGACTTTAGCTGTTTGTTTTTATTTTTCAAAGTGAAATTTATTCA
TATAAGGATATAACTTGACGAAATTAAACTGTTAGAGTATTTTTTACATT
TCTTTGATTGTTTTTTGTGTTTTTAAAGTTAAAATATCATGATGGCTCAG
CTTTAAACTTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTAGTGC
TTTTAGTTTTACTAATATATTCATTGTACTGGCATGATAAGAGGTAAAAA
TTTATTGATAAATCTATGAAGTAGTTCATTTTTCTCGATCGTAGTCAAAT
AAAGTTGTTTAATGTTCTCTTGGTTTGGTGTTTTTGTAAACATTAAGGTC
TTGTTCCACTCAGCTTTTTTGAGCCGCCGCTGAACAACGCGCACGGCTTA
ATTATTGCTTAAATTAAGCTGTCAAAGCTGTTCGCTTTGAACGCAATGAG
CTTTTTTGAAAGTTGAAAATTTTCAACTTTGTGCGCAAAGCTGTATATAC
AGCTCTTTTCTTTTTCTTTTTTGGCCAACCGATCAGAATGGATAATTGTT
TTTTTTTGAGTGACGTTTGCAAAAATAATAAACAAAAGTATTAAATCAAA
AAGTGCTGCACCTGTGACATTTCTTTTAAATGAGTGGAAAGATAAAAGCT
GTGCGCGATGTTCGGCGGCTCAAAAAAGCTAAGTGGAACACGACCTTTAT
GAAATTCTTCGAACAGCAAGCTTATTAAACAGAATTTTCGGAAGTCTTGT
AAGTAGCTGCTACGTTAACGATTGATATTTTGTTCTGCTTCTACACGTAC
ATATTTTTTATGCATCCATTATCTACCATTTGACTATTATATCTTTCGAT
GAATATTTGCTTCTTGATAAAAAAAATCATTTAACTTCAAGCAAGGAAAG
TTTATGAACAACTTTTCTAATATATATTTTGACAGTTAAACCAAAAATTT
GGTTTACAGTTACTGGCCCTATTTTGGTTCTTTATATTTTAAACATTGTA
ACATCTGGCATATGTGTAGTCATCTAGCATGCCAAACACATATCAGCATT
AGCCATTCAATTTGGGTGTCAAAATGTGGATGGAACTTTGTTTAAAACTA
AAGGACAAGCTTAAATTGTAATAACCGAATTGATACAAAATCTTGATAGC
ACTTTTATATCAGGTGTGCATGCTGTTAGTCATTTTACATGCCAAAACAG
CATCATCAGTCAAAACATTCTAAACCATGTTTAAACTGTACAAATCATGA
TTAATTGGACTATCATTTTTTTGTATTGTTTTGTTATTACTTTCTATAGC
TTTCAAAAATACTACTAGCTTGTGTACTCAACAAAATAGTTTACAAATTA
ATAAGATAAAAAATATGTATTGTTTGAGAAAAGTTAACTTTTCAAAACAA
AAAATAGTCGAATCCAGCTATCTTAAAGTTTAAATTTTTTTGTTGGTCTT
AGCTATTCTGTTTTAGACAGCTTTTGAAGTATGATCTCTCTCACAATGAA
GTGGTGAGGCAAGTTTTATTGTCGTACTCATTTTCAAGTTTCGTAATAAT
ATGGGTTACTTATAATAGTCGAAGTGTTTTTCCATCAACCTTAATCATGC
AACATTCCTTGTGGTACATATTACTTCATATTAAACATTATCTTTGAAGA
GTGAGATGTAAAAATTCAAAGTTTATTATTCATCAATGAGATCTCTTCAT
GTATGTCTATCTTTCTTCAGTGCAATGACTTTTTACAATGAAATTTTCAA
ATCTGTCTTGAATTTTTTTTGTCAAGCCCGATATTAGAGATGGTAAATTC
CTTTTCTTCTTTTTCTTCTAGCATCAAAGCAAATGCTGCATGCAATAACC
ACTGGATATTTATTACAAGGAAATTTACTTTCAGGTAAGTTATTCCTCTC
AGGTTTTCCCTTAAAGAGAGATGATGTTTTGCTTTATACCCTAACCGTAG
ATCCTCTGCCAATATGGAGATGTCTTTTTCTCTAGAAATTCTCAATTTTT
ATAGACCGCCACAGTGCTACGGTGGCCTCAAAAGCTCACAGTATACTTGC
AGTTCTGGCACACTTCCAGTTCACAAATTTTATAAGAACTGGAACTGTCC
TGGATCAATGATGCAGAAGCAGAAGACCCAGAAGGTTCTAATTACACACT
GCGCTACGTTTTATGGTGAATCTTACATGTTGTGTGTTAAATTTTGTTTC
AGTTTAATTTGTTTTTCATTTTCAGAAGCTATAATCAAAATGGCAAGCAG
CAAGGAAAGATAACATAAAGGAGAGCTACCCAGGCAGATACCCGAGGTAA
GGAGTTCAAATTATTGTTTATGTACGAGTATTTTCAAGATAGCAGGAGTA
ACACATAGCATGCACCCCCTGAGCTTAAGGGAGGGGCTAAACCATTGTTG
CTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039788-exon-sc0002200-1575043694:22632..22880 | TCONS_00039788-exon-sc0002200-1575043694:22632..22880 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1575043694:20647..20709 | TCONS_00039788-exon-sc0002200-1575043694:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1575043694:20127..20305 | TCONS_00039788-exon-sc0002200-1575043694:20127..20305 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1510915933:22632..22880 | TCONS_00039788-exon-sc0002200-1510915933:22632..22880 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1510915933:20647..20709 | TCONS_00039788-exon-sc0002200-1510915933:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1510915933:20127..20305 | TCONS_00039788-exon-sc0002200-1510915933:20127..20305 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1491911889:22632..22880 | TCONS_00039788-exon-sc0002200-1491911889:22632..22880 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1491911889:20647..20709 | TCONS_00039788-exon-sc0002200-1491911889:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039788-exon-sc0002200-1491911889:20127..20305 | TCONS_00039788-exon-sc0002200-1491911889:20127..20305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002200 | supercontig | sc0002200:20127..22880 - |
Blast
The following BLAST results are available for this feature:
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