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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039787 ID=TCONS_00039787|Name=TCONS_00039787|organism=Clytia hemisphaerica|type=transcript|length=349bp
TGAATTTTGGCGGccaacaagatggcggacgacTTCCACCGAAATAACCT
TCTGAAGTATAGCTGAATTTCTATAGCCAAGGATAACAGAATCCATCATC
AAGTTAACATCAAAGCAAATGCTGCATGCAATAACCACTGGATATTTATT
ACAAGGAAATTTACTTTCAGaagctaTAATCAAAATGGCAAGCAGCAAGG
AAAGATAACATAAAGGAGAGCTACCCAGGCAGATACCCGAGGTAAGGAGT
TCAAATTATTGTTTATGTACGAGTATTTTCAAGATAGCAGGAGTAACACA
TAGCATGCACCCCCTGAGCTTAAGGGAGGGGCTAAACCATTGTTGCTAG Run BLAST on NCBI transcript from alignment at sc0002200:20127..22733- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039787 ID=TCONS_00039787|Name=TCONS_00039787|organism=Clytia hemisphaerica|type=transcript|length=2607bp|location=Sequence derived from alignment at sc0002200:20127..22733- (Clytia hemisphaerica)
TGAATTTTGGCGGCCAACAAGATGGCGGACGACTTCCACCGAAATAACCT
TCTGAAGTATAGCTGAATTTCTATAGCCAAGGATAACAGAATCCATCATC
AAGTTAAGTATAAATTTTTCTTTATTATTACTTTGTAACTTTAGTTTGCT
TTTGAAGCCAGCAGGAAGTTTTGAGAGGAATTTTAAGTATAATTTGATAG
TGGCTTTTTGACTTTAGCTGTTTGTTTTTATTTTTCAAAGTGAAATTTAT
TCATATAAGGATATAACTTGACGAAATTAAACTGTTAGAGTATTTTTTAC
ATTTCTTTGATTGTTTTTTGTGTTTTTAAAGTTAAAATATCATGATGGCT
CAGCTTTAAACTTGCAACCTTTTGCATCATCAGTTAGTGTGTTATCTTAG
TGCTTTTAGTTTTACTAATATATTCATTGTACTGGCATGATAAGAGGTAA
AAATTTATTGATAAATCTATGAAGTAGTTCATTTTTCTCGATCGTAGTCA
AATAAAGTTGTTTAATGTTCTCTTGGTTTGGTGTTTTTGTAAACATTAAG
GTCTTGTTCCACTCAGCTTTTTTGAGCCGCCGCTGAACAACGCGCACGGC
TTAATTATTGCTTAAATTAAGCTGTCAAAGCTGTTCGCTTTGAACGCAAT
GAGCTTTTTTGAAAGTTGAAAATTTTCAACTTTGTGCGCAAAGCTGTATA
TACAGCTCTTTTCTTTTTCTTTTTTGGCCAACCGATCAGAATGGATAATT
GTTTTTTTTTGAGTGACGTTTGCAAAAATAATAAACAAAAGTATTAAATC
AAAAAGTGCTGCACCTGTGACATTTCTTTTAAATGAGTGGAAAGATAAAA
GCTGTGCGCGATGTTCGGCGGCTCAAAAAAGCTAAGTGGAACACGACCTT
TATGAAATTCTTCGAACAGCAAGCTTATTAAACAGAATTTTCGGAAGTCT
TGTAAGTAGCTGCTACGTTAACGATTGATATTTTGTTCTGCTTCTACACG
TACATATTTTTTATGCATCCATTATCTACCATTTGACTATTATATCTTTC
GATGAATATTTGCTTCTTGATAAAAAAAATCATTTAACTTCAAGCAAGGA
AAGTTTATGAACAACTTTTCTAATATATATTTTGACAGTTAAACCAAAAA
TTTGGTTTACAGTTACTGGCCCTATTTTGGTTCTTTATATTTTAAACATT
GTAACATCTGGCATATGTGTAGTCATCTAGCATGCCAAACACATATCAGC
ATTAGCCATTCAATTTGGGTGTCAAAATGTGGATGGAACTTTGTTTAAAA
CTAAAGGACAAGCTTAAATTGTAATAACCGAATTGATACAAAATCTTGAT
AGCACTTTTATATCAGGTGTGCATGCTGTTAGTCATTTTACATGCCAAAA
CAGCATCATCAGTCAAAACATTCTAAACCATGTTTAAACTGTACAAATCA
TGATTAATTGGACTATCATTTTTTTGTATTGTTTTGTTATTACTTTCTAT
AGCTTTCAAAAATACTACTAGCTTGTGTACTCAACAAAATAGTTTACAAA
TTAATAAGATAAAAAATATGTATTGTTTGAGAAAAGTTAACTTTTCAAAA
CAAAAAATAGTCGAATCCAGCTATCTTAAAGTTTAAATTTTTTTGTTGGT
CTTAGCTATTCTGTTTTAGACAGCTTTTGAAGTATGATCTCTCTCACAAT
GAAGTGGTGAGGCAAGTTTTATTGTCGTACTCATTTTCAAGTTTCGTAAT
AATATGGGTTACTTATAATAGTCGAAGTGTTTTTCCATCAACCTTAATCA
TGCAACATTCCTTGTGGTACATATTACTTCATATTAAACATTATCTTTGA
AGAGTGAGATGTAAAAATTCAAAGTTTATTATTCATCAATGAGATCTCTT
CATGTATGTCTATCTTTCTTCAGTGCAATGACTTTTTACAATGAAATTTT
CAAATCTGTCTTGAATTTTTTTTGTCAAGCCCGATATTAGAGATGGTAAA
TTCCTTTTCTTCTTTTTCTTCTAGCATCAAAGCAAATGCTGCATGCAATA
ACCACTGGATATTTATTACAAGGAAATTTACTTTCAGGTAAGTTATTCCT
CTCAGGTTTTCCCTTAAAGAGAGATGATGTTTTGCTTTATACCCTAACCG
TAGATCCTCTGCCAATATGGAGATGTCTTTTTCTCTAGAAATTCTCAATT
TTTATAGACCGCCACAGTGCTACGGTGGCCTCAAAAGCTCACAGTATACT
TGCAGTTCTGGCACACTTCCAGTTCACAAATTTTATAAGAACTGGAACTG
TCCTGGATCAATGATGCAGAAGCAGAAGACCCAGAAGGTTCTAATTACAC
ACTGCGCTACGTTTTATGGTGAATCTTACATGTTGTGTGTTAAATTTTGT
TTCAGTTTAATTTGTTTTTCATTTTCAGAAGCTATAATCAAAATGGCAAG
CAGCAAGGAAAGATAACATAAAGGAGAGCTACCCAGGCAGATACCCGAGG
TAAGGAGTTCAAATTATTGTTTATGTACGAGTATTTTCAAGATAGCAGGA
GTAACACATAGCATGCACCCCCTGAGCTTAAGGGAGGGGCTAAACCATTG
TTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039787-exon-sc0002200-1575043694:22627..22733 | TCONS_00039787-exon-sc0002200-1575043694:22627..22733 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1575043694:20647..20709 | TCONS_00039787-exon-sc0002200-1575043694:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1575043694:20127..20305 | TCONS_00039787-exon-sc0002200-1575043694:20127..20305 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1510915933:22627..22733 | TCONS_00039787-exon-sc0002200-1510915933:22627..22733 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1510915933:20647..20709 | TCONS_00039787-exon-sc0002200-1510915933:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1510915933:20127..20305 | TCONS_00039787-exon-sc0002200-1510915933:20127..20305 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1491911889:22627..22733 | TCONS_00039787-exon-sc0002200-1491911889:22627..22733 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1491911889:20647..20709 | TCONS_00039787-exon-sc0002200-1491911889:20647..20709 | Clytia hemisphaerica | exon |
| TCONS_00039787-exon-sc0002200-1491911889:20127..20305 | TCONS_00039787-exon-sc0002200-1491911889:20127..20305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002200 | supercontig | sc0002200:20127..22733 - |
Blast
The following BLAST results are available for this feature:
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