TCONS_00039777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039777
Unique NameTCONS_00039777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039777 ID=TCONS_00039777|Name=TCONS_00039777|organism=Clytia hemisphaerica|type=transcript|length=278bp
ACTGTATGTAATTTATGTTAGGATCAAGCAACCTTCAAGCattctctgag
cctgtttttggatttttatatgcctataaaaagacaaatttatTCTATGC
AACATTTCAAGTTAAAGCTTTTGATTTATAATTGCGATTCAAAATAGTGA
TTTAGGTGTACTTTTTTGCTTAACGTGTTGATATGTTTAGTTGAAGAAAC
ACAGTATGCAGTAAGATAAAAATTAAACGCTAAAAAGTTGCCACTATCAA
GCTATTGTGCTGCTATTTTTTGGAGTCA
Run BLAST on NCBI

transcript from alignment at sc0002197:7891..8168

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039777 ID=TCONS_00039777|Name=TCONS_00039777|organism=Clytia hemisphaerica|type=transcript|length=278bp|location=Sequence derived from alignment at sc0002197:7891..8168 (Clytia hemisphaerica)
TGACTCCAAAAAATAGCAGCACAATAGCTTGATAGTGGCAACTTTTTAGC
GTTTAATTTTTATCTTACTGCATACTGTGTTTCTTCAACTAAACATATCA
ACACGTTAAGCAAAAAAGTACACCTAAATCACTATTTTGAATCGCAATTA
TAAATCAAAAGCTTTAACTTGAAATGTTGCATAGAataaatttgtctttt
tataggcatataaaaatccaaaaacaggctcagagaatGCTTGAAGGTTG
CTTGATCCTAACATAAATTACATACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024064XLOC_024064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039777-exon-sc0002197-1491911889:7891..8168TCONS_00039777-exon-sc0002197-1491911889:7891..8168Clytia hemisphaericaexon
TCONS_00039777-exon-sc0002197-1510915933:7891..8168TCONS_00039777-exon-sc0002197-1510915933:7891..8168Clytia hemisphaericaexon
TCONS_00039777-exon-sc0002197-1575043694:7891..8168TCONS_00039777-exon-sc0002197-1575043694:7891..8168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002197supercontigsc0002197:7891..8168 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.562287	4.07217	3.79023	1.58584	5.11674	1.49931	2.6377	0	0.58608	0.654029	0	0.322577	0.368494	0.381055	0.783114	1.52214	0	0.940505	1.28797	0.163966	0.267808	0	0	6.03105	5.69643	1.68258	2.83313
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top