TCONS_00039752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039752
Unique NameTCONS_00039752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039752 ID=TCONS_00039752|Name=TCONS_00039752|organism=Clytia hemisphaerica|type=transcript|length=2155bp
GTGGTCTTGTCCTCGAACCAAAGAAAGGATTTTACGAcaaatttattttg
ttgttgGATTTCAACAGTTTGTATCCTTCCATCATTCAAGAGTATAATAT
CTGTTTCACCACAATTGCCAGAGAAATGAAGAAGTCTGTCATCGAGGGCG
AAGAGCTGTTACCCGATGTACCCGAATCAGGATTGGAATTTGGTATTTTG
CCGACGGAGATTAAACGATTAGTCGAACGACGACGACAGGTCAAGAAATT
ATTGAAGACAGTAACTGAAGGTTCTGAATTGTATTTACAGTATGATATTC
GtcaaaaagctttaaagttGACCGCAAACAGTATGTATGGTTGTCTTGGT
TTCAGTCATTCCAGATTTTACGCTAAACCTCTTGCAGCTTTGGTTACCGG
AAAAGGGCGTGAAattttgatgaaaacaaAAGACTTGGCATCAAACCTTG
GCCTTGATGTCATTTATGGAGATACAGATTCTATCATGATCAACACTAAC
TGTGATGATTGGAACGAAGTCAGAAAGATTGGTACCAAGGTTAAACAAGA
AGTCAACAAATTgtacaaaatgattgagattGACATTGATGGCATCTTCA
AGTCCATgcttttgttgaaaaagaaaaaATACGCAGCTGGGATGATCCTT
GATCGAAAACCTGACGGTACTTTTGTGGAGAAAAGAGAAATGAAAGGGTT
GGATATTGTGCGACGTGATTGGTCAGATCTTGCCAAAGATGCCGGAAATT
ACGTCCTTGGTGAAATTTTGTCAGCAAAGTCACGTGATGTTATTGTGGAG
AATATCCACGATTATCTCCGTAATCtaAAAGACCAAATTGACAATGATCA
AgttgaccaatcaaaatatgaaattcaCAAGAGTCTGACGAAGAACCCAG
AAGAGTATCCAGACAAAAAGAGTCTTCCACATGTTACTGTTGCTTTGAGA
TTGAAAACCCAGGGTCGACGAGTTGCCGTGGGTGATACGATCAGTTACGT
CATCTGCGATGATTCTTCAAAACTTGCTGCCACACAGAGAGCCTACCATC
TTgaagaattaacaaaaagtaCAAGCTTGAAAATTGACAAACAATATTAC
TTATCGAGTCAAATTCATCCATTGGTGTCTCGATTATGCGATCCAATCGA
GGGAACTGATGCAACTTTCATTGCTGAGTCACTTGGCCTGGACCCGACAC
AGTACAAATCAGCAACCAATCATCATGGTGGTGACGATCCAAATGTATCT
GTCTTGATGACCGATGAAGAACGCTTCAAGGAGGATCCATTGAATTGTAG
CCAATGTAAACAAGATTATAAAATGAACCATGTGCGAAATGCATTGCGAT
TGTTCATCAGGGAAAAACAACATAAATATTATAACTGTTGGCTAAAAACT
TCAAGAACGCGCACGTATGTCAACAATGTCATCGTGGCAACTTGAGAATC
GAATATACTGACAGTGCATTGTACAATCAGTTCTTATACTTGTCGATTAT
TTTCGACATCAGCAAGTCAAACGATCATCGACAATCGAGAGCTTCTGGTA
AAGGTGAAGAATGGATCACTTTACACAAAGAGGTTGAAAAAGTTCTCCAT
AACAATGCTTACCGTAATGTAAATATGTCTAATCTGTTCTAAAAAATGCT
GACCAAGcatgcatttttttttttaaattccttTTAAACTTTATATACAA
ATTTTActctaaaaatataatttcttttaACATCTGTGTATGTAATTTAG
CagtattttaaactttttttttgatttttgtaataTATCATTTTAACCTT
GGGCTAATACCGGTTAACTTTGGCGGAAGTTTTAAACAAATTGGGTGTTG
CCATTAATCTTGGATTCCTTTAAAAGATTACTGTTTGTGACAATCGTAAC
TAGAACAGGACgatgtttcaacgttcatccgATGTTACCTTTAATGAATG
TTGATCTAAAACAGTTTCGTTCCTAAAAATACCCACAATTCAACGTAGGT
GCgattttattgttatttttgtttattttaattttcttttattagtttat
ttaaaattttattattacataattagaaaatcttttaaaaatctttacca
tACTTCTTTTACTTATATAATAATTGTTACtgttgttaaaaatatttttg
tttca
Run BLAST on NCBI

transcript from alignment at sc0002189:2884..16561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039752 ID=TCONS_00039752|Name=TCONS_00039752|organism=Clytia hemisphaerica|type=transcript|length=13678bp|location=Sequence derived from alignment at sc0002189:2884..16561- (Clytia hemisphaerica)
GTGGTCTTGTCCTCGAACCAAAGAAAGGTTAGTCTGAATCGCTGACCTCT ACTAAACGCGAGGTAGTTATATAAAGAGCACGAATCCGTTAGTGGATGCC AGCAGCCTAAATAAAGGTATGACACGGTGACTTTATTATCGCCAGGGTTA AGCGCGAGTTTTCTTTCGAAGGCGAAATGACACGAAGTTTATGATCCTTC CTGAGGAAACTATCTGTAACTAAGCCTTATGCTCTTATAACGTTTGCTCT TATAAAAAACCGTGTATTTCTTGACTGATTAGGAGTTTTTCTAATTTCAA TAATCATCTCTTCTTCTTCATAGGATTTTACGACAAATTTATTTTGTTGT TGGATTTCAACAGTTTGTATCCTTCCATCATTCAAGAGTATAATATCTGT TTCACCACAATTGCCAGAGAAATGAAGAAGTCTGTCATCGAGGTAAAGCC AACCCTCTCTCTCTCAAATTCGAATTCATGATATTCATGATGTAATGTTT TATTTTGAATTTAAACAATGAAACTATTTGCAAACGCCAGGGCTACAATA TAAAATATTACGTCATGAATATCATGAATCTTTCTGTAAATCGATTTTCA GTTCCCGTCGTTCGTTCCTGTTTTTTCTTACTCACTAAATGTTTTAGGGC GAAGAGCTGTTACCCGATGTACCCGAATCAGGATTGGAATTTGGTATTTT GCCGACGGAGATTAAACGATTAGTCGAACGACGACGACAGGTTGGTTTTT TTTTCTGATATGTTACTGTAGCCAATCAACGTTGATTCGAGAATTTAGAA TCAGTGTTGAAACTTTTCCGTCTGTAGACGGAAATCTACACCTGTTACCA GTTGAATTATTTAACGGATTTCAGGTCTAAAAAACAATCCTTCAAAACAA AATTTAGTGAAATTGGAGTCAAATTTTAGACTTTTCGCTGGTTGCAACAC TGACTGTAGACTGACGTTTCTTTTCTTTGAGCTTTTTATAAACTCCCCTG TCCAGCAGACATGTGCATAACAGATATTCACATGTGCTTAACACAAAATG ATGAGCCACGTTTCCGAGTTTTCCACACAACCTGCTTTTGTAATCTCTTC GGTAATTCAGTAGGAATTGACTTAAATTGTTCGGTTAATTGAGTTTCTGT CTTCGTTTTTTTTCAGGTCAAGAAATTATTGAAGACAGTAACTGAAGGTT CTGAATTGTATTTACAGGTATTTTTCATAAGTATTTCTTTCCGTCTGCGG CTGAATAAAATAAATACTGGTGTTAATTTTCGCTACGACGGGCAGGATTC CTGCAGCCTTCATTCGCACAACGGTACTTTTCTACAGACTAGCCCGAAAG CAAAGCATACACGGTCAATAAAAACATATCAACTTTGCTTTAGAACGAAA GTTTGAATACCTGAGTTATTACTAACTTTATTTAGCACTATTGTGACAAT GTGACTTGCCGTGGCACTCATAAGGTTCGACCTCGCGAGGTTCGCCCTCG CGTGAGCATCGCTCTCCCAGTGTCGTTCGAGTGTCATGGTATACGCCATG GCTTGGCAGCTCGCGTCTGTCAGCGCCGTGATTCCTACTCCTTCATGGGT AGGACCCTTCCCGAATGCATTCGGAGGGCTCATATCTATCTATTTATCAC TATTGAGTATGCTAAAAATGAAATAATTTTGAATCTAACCACTGTCAATT CGAGTTCGCTCGTTTGAGGTTTAGTAGTCTTACCTCAAAACATATTTTGT GAATGTATATTGAGTTTATTGTTCTACATCTGCAATTTGAGCTTCCCTAA GCTCTGATCTTTTGTGTACTTTATCCTTTTTTTCATTTCTTAAAATCTTT TGTTATTTTCAGTATGATATTCGTCAAAAAGCTTTAAAGTTGACCGCAAA CAGGTATTTCTAGTTTAGCTATTTCAGCTTAGATTATTTAAATGGTTATT GTCAATTTTGAGCTTCACAATATATTTCCCCGGGGGGGGGGGCAGCTGGG CAAAAGGACCGACGGGTATGTGCGGGTCCTAAGGGTACCTTTTCCAATAT GTTTAAAATGCACTGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNTTTCACTGATTTTTGCTGCACTGTAAGGGTG CAATTTTAAAAGCCAATTTTTGGCCCGCACATACCGTCAGTCCGCAAACC CAGTGCCCCCCCCCCGGGTATATTTCTCAATAGTTTCAATGCAATCACTT AACAATGATTTACAAAAACGGTGACTACCTATTTTTAATGACTGACTTTC TGCTTTGGTTGGATGAATTTTCGCGGGGATTAAATTTCTCGCGCATTTTA GTGTCATCCACGAAAGTAAGTCTAGATGAAAATTTTCAAAAGGCTTCATT CACGAAAATAAGTCCCCGCGAAATATTTCAAAATCCATACTTGCTCTTTT CAACGGATAAAAAATGATCCATCGTCAAAATTATCGCCATTAGAAATAGT TTCTGTATTCATTCTGTTTTTATATTCATGAAAAAAATTCTCCGCGAAAT ATTTGAAAGGGTGTCAACGGACACTGATAATGATGATAACAATTGGATTT CTTCAGACCTTAATGTTTGCATATATCTTTCTACCCATAGTATGTATGGT TGTCTTGGTTTCAGTCATTCCAGATTTTACGCTAAACCTCTTGCAGCTTT GGTTACCGGAAAAGGGCGTGAAGTAGGCTTAATTTGCTTTTCCTAATTTA TTTATTAATTTTTGCTTCTTCGATATTCTTATTATCTTTTCATATCTTGT TATGAAAATGAAATATATCACAACCTTCCATAAATTTAAAAATGGTAAAT TTAATCTCCGGGTGTGCCATAAAGGGCTATTCGATTTTATATCTATACAG GATGGTGGACGAAAACCTCCCTGGGGTAACCCAAGAAGAATTCCCAGGGG TTCTAAAGGGGTGTTTTTTAAATTTTTCTTTGTAAATTTCGCCATTTTCC TGGGAGTATACAGACATTTCCAAGAATTTCCTTTTCACTTGAAAAGGTTC GTCCACGCCCTCCCCCTCTATGGGATTTTAGTTGAACAGCCCGAAGCTGA AAAGGATCTGATTGTTCCCTCCCCTTCTTGGCATCCTCTACCTTAAAAGA TGCCGATCAAATATATAGAAAATCTATTTTTCCCCTCCACCACCAATAGA TTTTGATGAAAACAAAAGACTTGGCATCAAACCTTGGCCTTGATGTCATT TATGGAGATACAGATTCTATCATGATCAACACTAACTGTGATGATTGGAA CGAAGTCAGAAAGATTGGTACCAAGGTATGTTGCTATTCCCACCCAGCTG GCACACAACGTTGTTTTAACGTTCATCTACCGTTATATGGACGTTGTGAA CGTTATACAAACGTTGAAACAACGTTGTGTGCCAGCTGGTCATAGATTTA AAGCCTGAAGGGCTAGATGGCGTGCTTTATTAAACTCTTCCAAGCAAAAA TAAGTGAATATCACAAAAAATATTCCTGCTATTGTTTTCAAAAACCTGCG AAGCTTCTGATTGGTCAAGCGCTGAAATTCTATTGTAATGTCACGTGACT TAGGTAGGAACCTCGGCACACTTTTCAGAAAAAGCACGATATCAAGCCCT TCGGGCTTTTAATTTTATGGTTATTCCCAGCACCTATGTGACTTCAACTT CTGCTTTTTAAATTTCGTCACTCAGAGATGTATTGATATACTAGGTGCAT TTATATACAAGCAGAAACATAGCTAAAACTCATTGGTAGCTTATTGTCCC AGCGTCGAGCCTTTTATTAGCATATCACATCATTGCGCTGACAGTGGTGC TGTATGTCTGTTTTTGAAGAAGCAGCGTTTCGTCAATTCAAGTTCATTTT GGAAGAAACGGCGCCTTTAAAACATTCGACCATTGCTTTGTTGCTTGGCC TTTCTGCCGCTCACGGCTTCATGTTTCTTGCGGTCGAAAGTCTTGTTTCA TCTAACGTTTCCAGATCATCTAAAAAGAACGACAAAGAACTTTTAAAAAG CGACAAAAAGAACGACAAACCTTAACCCTAACTATCAAAGAACGACATAT TTCGCCGTCCCAAACCACGACCTTGGCCAATGACTACCACTCTTACATAT TCATTACTTTTTGTACTTTCCGCTATTTAACAACTAGCGGTTTAAAGAAT CATAAATTACGCATGCGTGTAAGTTTCTATTTGGGTGAGCTGGAAACATT AGAACATTAGAGTCTTTATATAGATTATGGTGATTACTCCCATAGGTTAA ACAAGAAGTCAACAAATTGTACAAAATGATTGAGATTGACATTGATGGCA TCTTCAAGTCCATGCTTTTGTTGAAAAAGAAAAAGTAAGTACAAAATTTT TTTTATAAGAACATAAGACTGCGATAGCCAAAATAGTAAGAATAAGTTGA GAACATTTTTGCGAACTCTTACAACACCAATTTCCTTAGATATTGCATAA AAATACTCACAAAATGGCGAAAATTAGAACATCTTTATAAGAGCATTTTT AGACTTAAAGCTCAAAAAGTTAAGAACAGCCAATATTACACTCGATATTC TTACATAAAAATACGTATATAAGTCTAGCTTACTAGACGAGAAAATTTTA GTCCCTTTTTGTCCCATGAAACAAACAATGAAATCATGGGACACATTTTT TTTTCTTGTGTTGGTGGGATTTAGCATGTTGCATTGCACCAACGCAAAAA AAAACTTCTCGTGTCCCCAAGCCTTAAGTGGGATATGCCAAGGAAAATTG AAGGGCATAACTAGATTTTAAACAAGCCAATAGTATCCTGTAAAAAAATT TTTTATCACATCACACCTACAATATTACATACTGAAGTGAGCACTTTTTA AACACCAACAATACTACAACAATAATCGAGTTTTCATCAAATAGACATCT TTACCCAACTGGACTTGAGTGGGAAATTTGATATTTGCGTGTGTTATCGC GAGACTTTATATTAGATTTCTTCAACATATTTTATCCTAATATTATTATT CGTTTTGACCAATAGAAGGAGAATGGTCCAGATAGTCACTTTGTAGTTTA ATATTTAAATTTTCTCTCTTTAGATACGCAGCTGGGATGATCCTTGATCG AAAACCTGACGGTAATTATACAAATTTTAAAGGTTCATTTTTTGTTAGAA AAAGATAATTCAAGTGCGGTGCTATTTTTGCAATCGATCAAATATCTCGA ACCTCTAAGACTCGAATGTATCCTTAACTCGAACAACTTTTCTTGCCCTT TCAGCTAACATTGTCTTATAAACCTTACTCCATAACTCGAAATTTCCAAA ACTCGAACAAATTTCGATTTTCCGTGCGTTGTTCGAGTTATGGAGACTTC ATTTCATCACCACGAATATTTATTTATGCCTTTTTTTCATATCTGTTTCT TTAAAAGGTACTTTTGTGGAGAAAAGAGAAATGAAAGGGTTGGATATTGT GCGACGTGATTGGTCAGATCTTGCCAAAGATGCCGGAAAGTAAGTTGTTG TACTCCAGCTCTAGTCTAGACGGCCGGCATTCTGCCCTGTCTATTGTGGG CAGAAAGTTGATAGTTAAAACCTTAGCTTGGAAAAGACTGACAGTTATCA TTACATTGATGTTAAGTATGTCAATTTATTGTTTACACAGATAACTTTCT TCCTACTTTAATTTACAAATAGAAAAGGCAGATTAGAATAGAATGGAATA GGCAGTGCGAAAAACAGGCCGTCTAAACTAGAGCTTATAGATTTTTCTGG CCTTTGGCGAGCAAAAAAATGATCAAATCCTAAAAGCTTTAGTAACTAAT TTCTTATTTAATGTTATATTTCAGTTACGTCCTTGGTGAAATTTTGTCAG CAAAGTCACGTGATGTTATTGTGGAGAATATCCACGATTATCTCCGTAAT CGTAAGTTGATGATTTAGCTCTTGTTGTAGAATTTTTTACTGCTCAATCC ACGGTCTGATTACAATGAATTTTAAACTACCTTATCGCACTAACAGGATT ACTTACGTAAAATGAGCTAGGTATTGCTAACGATTGGACACACTTTGGAA TTTTGAGCCCAGTTCATTTTTCCAAAAATTTTGCCTTTTACACGTTAACG AAATGACGTACTGGTTGAGTCCATTAAAACTTAAATGATTATTTAAGAGG GCGAAAGAGGTTCCTTTCAATACTTCAATGTTTCAAATATTCAAATTTTG ATAAACGTCGGGACCTAATTATCGAGCCGTTGGAATTGATCGATTATTAG GCACCTGAGAGTAGGTTTGAAATAAATTTGTCATTTTTCTTCTTTAGTAA AAGACCAAATTGACAATGATCAAGTTGACCAATCAAAATATGAAATTCAC AAGGTAAAATGAGTACATTTGTACAGCTTGCTTTTCCGTTAATTCATGGA ACCTTTTCTCGTATGTATGTTAATACATTTTGATTCCGGATAGAAGATTT CAATGGCCTCAAGAAGCCTACGTTTATTATGTCATCTCCAAGAAATATTG AACTGTTTCCCTGTCATATGACATCATCAGCTTTTTTTAGGGAAAAGGTC TTTCCTAGAAATTCAGATTTGTTTCCCCATTTGTATCGAAAAAAGCTCTC TCCTGGAAAAGGGAAACAGATAATTCGCAGAAGTGAGCTCGTTGACTGCT TCTTTAATTCCAAACTGCTTCAATCACCCTGCCGTTAGGTATTCTGATCT AATTGGTTTTACAAAGATGATCAGTTAATGGTTTATTTTTACAGAGTCTG ACGAAGAACCCAGAAGAGTATCCAGACAAAAAGAGTCTTCCACATGTTAC TGTTGCTTTGAGATTGAAAACCCAGGGTCGACGAGTTGCCGTGGGTGATA CGATCAGTTACGTCATCTGCGATGTAAGTACATTTCGTAAATACTACACT TTATAGTAGATTATCGACAAATCGAACTTCTACAACTCGGATGTCTCTAT AACTCGATCAATTTGTGGTCCCCTCAAGGAAAAAACCTTATGAACAAGTT TCTATGACTTGATCTTTTCATAACTCCGATAATCTTGCGCTCCGAGTGGG AACACGCATAGAGAACGTTATTATCATTGTACTTTGTCTATAATAGCCCC GGGATATGGGATACTAGGTTTGCAAAGTGATGATGGGCCAAAAATCCAAA ATCTACTCTTAGAGAGAGAAAGGATTAACGTTTTTGGGATCCTTACAGGG GCTTTCCCTTAAGTTTTTGTCGATTTTCACCCAATTTTGATTCAAATTTT TGAAAATTACGAGCCTTTGATTTGGGAGGTTTAGAAACATTCTTGATAAT AAAACCATTTTTCAACTTTTTGTAGAAATAACATGGTCGGGGGATGACTT GGGATTATAATTCCCGAGGTTCAATGAAAGGGGAAGACAAAGCAGGGAGA CTAATTCTTGGACCAGGCTACATTTTTCTGCCTAAGCAAAACTGCTAGAA CTAGGCTATTTTACAGTTAAATATAGGTACTTTGTCTTTTAAACAGGCGA AGACTTCTGTCGAACACCGGTTTATGAAATTAATTTATATTTTTTTCTTC ATCTTCAAAGGATTCTTCAAAACTTGCTGCCACACAGAGAGCCTACCATC TTGAAGAATTAACAAAAAGTACAAGCTTGAAAATTGGTATCCTTTTCAAA AGATTACAATTGATTTGCCTCTTGTTCCTTTCTTTGTAAACTTAGTAAAA TAGTTTTGATGTCTTTTTATGTGTATAACCTAGTTTTCTTCTCACTGTAT CTCACTGAGTTATCAGTCAAAAGCGAAAGGGTCCTGCTTACAGTCTACAA AGGTCCTCCGCTCAGTGAGGTACAAGTACAGGCTTTTCCGTCTCGAAATT CAAAAACTTCTCCAAAGTTTTGATAGTCTAGCAAGCTAGACGACTAATTC AGACATAGTAGAATAAAGCAAAAAGTAATGGAGGGAACAAATTTTAGTAC AAACTAAATCCTGTAACAATAATCGTATTATCGTATAACGCCTATAATAC TGTATTACACGTATTATGAACGACTCCAGTCTAAAATTTGAAGAATCTTT CCTTATTTTTTGCTTTGACCATTCTTTTTAATGAACTATTAAATAAGCTA AAGTAAATCTTACATTGAATTTTCCTAGACCACCCAAGGATCCACTTTAA TTGAAACGTTTTTTTGGTAATTATGTGTGGCGGAGCCACTTTTAGGTTAT TTTCATCACCGTATCCTGCGAAGAGCTGTAATCAAAATCTAGAATCATTA CACACATACTTTATCACTTATTTTATCCTTGACTCGATCTCCCCTACAAT TCAAAGACAAACAATATTACTTATCGAGTCAAATTCATCCATTGGTGTCT CGATTATGCGATCCAATCGAGGGAACTGATGCAACTTTCATTGCTGAGTC ACTTGGTAAGATGAGGCTTGCCTGCTTTTTTTTATTTTTTTTGATCCTCC TACCGGGTGCGGCAAAGAAAGTATACAGGATTGTCAAGGTATTGTGAGCT TATGGTTGACGATTTTTTCGTTGGTTCATTTTTTATTCTTTAGAGGAAAA CTTAACTTAGATTTTGGTATATAAAACTTTAAAATCAAAATGTTATATTA AAAAACTGAAATTTTTGACCTACCTAAGAATGACAAAATTTATTAATCAA CAACAAAATCTTTAGTCGTAAACTCTTCACAAAACTGTGTACTTTTTTGG CACACCTGTTATATTTACCGAAAGTTAGAAATCCATTACCGTAGAGGACC AAGTGCATATAAAAGCACCTTTCTACAGAAATCCCTATACGGGTACTCAA AAATCATTGAGAAACAACCTGCAAGCATTTGAAATCAATTTGACAATTTT GGTCGTCACGGATCGATGGTTTCCTAAAGGTTAAACTGAAATCCTTCCTA GGCAAGTTTTACCCCGTTTACCCCATTGAACACCTGAGCTGAGCAAAGAA TTCATGATTTTCATGACATAATGTTTTATACGGAAGCACCCAAAAAAGAC CGGGTCTTTGTCAATAATTTTGAATTCAAACAATAAAGTAGTGGCATATG CCCGGAATATTTTGAGTACTTCCGTATGAAACACCACGTCGTTAACATCG TGTAAATTTTCTTCAAAACTCATTATTCTTGTATTTTACTTCTTTCATAA TTTTTAGGCCTGGACCCGACACAGTACAAATCAGCAACCAATCATCATGG TGGTGACGATCCAAATGTATCTGTCTTGATGACCGATGAAGAACGCTTCA AGGTATTTCAATGGTGTTAACTTTCGTGGAGATTAAATTTCGCGGTTGAG CTTATCCGCGAAACTTTAAGATTTTGCGGGGACTTAATTTCGCGGACGGC ATATTGGGTGACAATATTTTCACGATTTTTTTCCTCTTGCTGTCAAATAA TGCATGTTGTTTGTTGAAATACGCATTATTAGCGCTTCTTTGATGCCAGT AAACATTCAAAAAGTATTTATTTGACATTTTTTGAGATTTGTTTAGAAAC ATTTCGCCGGATTAAAAGTCCATCGCCAAATTTTGAAAAATTTTCTTGCT TGAGAAAAGTTGAAAATTCATGTACTGAGCCTTTGTCTGAATTCAAAGGA TCTCAAGATACCAAGGTAGGAATCACAAAAATTGTTCGATTTGGCTGAAA TTTGGGGGCGTTTTTTTTTCATTTTTCAAAAATTTTGATTTTTGGGGCCT GGTGGCGAGTTTTTTGCCAAAGCGAGGCTAAAACTTTGGGGCAGCCTTCG GAGACTTGAAAAATTGTACGATTTTGCTGAAATTTTGCACACTTGTTCCT TGGGTGAATATCTGGGGTGTTTCTTTCACCGTTTAGCCAGTTATTTTTAA AGGTTTCATGCAAGTTCGTCCACCCTATAATTTGAGCATCTACAATCGGG CCTTTGCGTTAGTTGTAAAAATACTGAAGTGCGTTGCGCACGTTCGACTA TTTTTGCAAAGACCCAGTTTTACGTGAACATTTGATGATAAAATCCTTAG GGTAGAGGCTTCCTACCTCGAATCTTTCCTTTATTCGAACAAGTTTGTTG GTCCTATCAGTTAAAAGTCTCTTAAACCTATCTCTCTTCATAATTTCGAA TTGAAACAAATCTGTGAACGCTGTATTTTGATGCCAATCCCTTCCTTATA CAGGGTGTCCCGTAAAAAAGTCCTGTTTCAGAACACGACTTCAAGTAGAA AAGTTTTTGTGTATGCATGTCAAAAATTAGTATCGATCATTAATGTGTTT TTACTTTGTTTGAAAGAGACGTTCATACAGGTTCATGAAAATATTTTATT ACACGATTGATGCTTTAATTATGTTTGATTGATGCTTTAATCATGTTTGA TTGATGCTTTAATTATGTTTAGAAGTTTATTGCTTCATTGTAACCATTTA AATTTTCTGCTCTCGTCGTGTTCTAACATAGGACCCTTTTTTGGGACACC CTGTACAACTTGTAAGATAGTGAAATGAAACCATTCTATTGGTTACATTC AAGTGTTACGTCACATCTAACCAATAGAATGGCTACATTCTATTTCGGAG CGAAACGGAACCGTCGCGTGCGAATATGGTCTAATACTCTACTTATTATA TTATAGGAGGATCCATTGAATTGTAGCCAATGTAAACAAGATTATAAAAT GAACCATGTGCGAAATGCATTGCGATTGTTCATCAGGGAAAAACAACATA AATATTATAACGTAAGTCGATACTAATAAATATACCTAAATGCTCGTATC AGCCCCAACTCACAGGCACGACGGAAACTTTTTAAATCTGGTACGGTGAA TGGGGAAATTTAAGGGATTTCACCGACGTCGAGGAAGATTTTGGGATTTT TTGTGTAAATCTGCCGCACCCGGTGCGTCGTGCCTGACTCATCCAAAGAT TTGGTTCGAGATTGCTTGGGTTGGATGACGTTGAAAATGTCTGTTTTTAC GAGTATATCAGTGTGATAAATACAGACATTTGTGATAATTGAACATACTC TGCTTCCTGTTTGATCGATACAGAGCTGGCGTTAGCAAGGTTTTCTTTTC TCATCTTATTCCGGAAAAATTCGCAAATGTTTTTTCTAAGCTGTACAAAC TATTTTACTAATAGATGAATTTCTTTTTAACCCAGTGTTAAAAGTTCTTC CGTTTCAGACGGATTTCCGTCTCGTTGAAATGTATAAAAAGGCTTACCCG TCTCAAAATTCTGCATAATACACCAAAATTTCTAGAATTTCATAATATAA TGAAATTTATCTTCATTTTTGGACGAAAAACCTTGCTTTGACCACTATTA ACCAACTTTTTATTTAATGGAAATCTCGACAAGCTCTTACTTATTTTCTA TTCTTCTTAGTGTTGGCTAAAAACTTCAAGAACGCGCACGTATGTCAACA ATGTCATCGTGGCAACTTGAGAATCGAAGTAAGTTGTTTTCTTTATACAA TAACACTGTTCTAAGAGTATAGGCTACGTCGTATCTTCCTTCGTTTTGAG TGTAAAACTCCTACTCTTCAAACAACAGTAAGGCCTAAAAGCCTGGAGCT GTCTACTGTGTAGACTATAAGAATCAAGTTCTTGCACCAGGTGTTCAAGA ACTTGACTCTTTGCTACCCCCTTAGCTTTCTCAACTGACAACTGACCACT TTGTGTTTTTGTTAGGTGTACATTGTCAGGAAATGTATGCAATGTCATCT TTAGGGCATTTTTATTTCGAAAAAGACACATAATAGGATTCAAAGGAAAT GATTTTTTTTTCTTTATTTTTCTGTGCTCATTTTCCATGGATTCTCCATT AATTTTAGACTTTCGAGTTATTCGAATCTTATAGTAGATGGTTCATGGTC AGCCTACTTGGCTATATATGAACTGAAAAGAAAGCAGGAGGACCGGGATT CAAACCAGGAAAGACGTATAACCACCGGGTTATCTCTCCAGGCCCGGTGG AACGACCGTTAAAGTAGGAGGCTGAAGGCTCAAAATTGGATAAAATTTGC TAGGAAAATCTCATTTGCTCAAAACTAAGAGGCTGTAGTCTCCCCAGTCT CCCCGCCTCTGCCGGGCCTGTATTCTTGTAATGACTTAACCTTTTTAAAT GCATTTCCTTTTCAGTATACTGACAGTGCATTGTACAATCAGTTCTTATA CTTGTCGATTATTTTCGACATCAGCAAGTCAAACGATCATCGACAATCGA GAGCTTCTGGTAAAGGTGAGGTCTAATACTAATTTTTTTCTTCTGATCTA ATTGAAGTCCTTATTGGGCCTTTCCATTTTATATCCATACAGGGGGTGGA CGATTTTAGTTCGTCAACCCTCACTTTTAAGGTATTAATAAAAGAATTGT TCCAAGGTTCCACGAACTTTTTTTTCAAAGGCACGAACTTTTTTTCAAAG GCACGAACTTTTTTTCGAAAGGCACGAACTTTTTTCCGAAAGGCACGAAT TTTTTTCGAAAGGCACGAACTTTTTTTTCAAAGGCACGAACTTTTTTTCG AAAGGCACGAACTTTTTTTCGAAAGGCACGAACTTTTTTTCGAAAGGCAC GAACTTTTTTTCGAAAGGCACGAACTTTTTTTCGAAAGGCACGAAGGGCA CGAAGGCACGCAAGGCACGAAATAAATCACACTCTTAAGTTGGTAGTCAA AATCTGTTTTTATTTCATTCTCCTAGGTGAAGAATGGATCACTTTACACA AAGAGGTTGAAAAAGTTCTCCATAACAATGCTTACCGTAATGTAAATATG TCTAATCTGTTCTAAAAAATGCTGACCAAGCATGCATTTTTTTTTTTAAA TTCCTTTTAAACTTTATATACAAATTTTACTCTAAAAATATAATTTCTTT TAACATCTGTGTATGTAATTTAGCAGTATTTTAAACTTTTTTTTTGATTT TTGTAATATATCATTTTAACCTTGGGCTAATACCGGTTAACTTTGGCGGA AGTTTTAAACAAATTGGGTGTTGCCATTAATCTTGGATTCCTTTAAAAGA TTACTGTTTGTGACAATCGTAACTAGAACAGGACGATGTTTCAACGTTCA TCCGATGTTACCTTTAATGAATGTTGATCTAAAACAGTTTCGTTCCTAAA AATACCCACAATTCAACGTAGGTGCGATTTTATTGTTATTTTTGTTTATT TTAATTTTCTTTTATTAGTTTATTTAAAATTTTATTATTACATAATTAGA AAATCTTTTAAAAATCTTTACCATACTTCTTTTACTTATATAATAATTGT TACTGTTGTTAAAAATATTTTTGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024043XLOC_024043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039752-exon-sc0002189-1575043694:16535..16561TCONS_00039752-exon-sc0002189-1575043694:16535..16561Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:16120..16238TCONS_00039752-exon-sc0002189-1575043694:16120..16238Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:15822..15914TCONS_00039752-exon-sc0002189-1575043694:15822..15914Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:15345..15395TCONS_00039752-exon-sc0002189-1575043694:15345..15395Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:14659..14699TCONS_00039752-exon-sc0002189-1575043694:14659..14699Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:13490..13571TCONS_00039752-exon-sc0002189-1575043694:13490..13571Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:12887..13012TCONS_00039752-exon-sc0002189-1575043694:12887..13012Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:11828..11916TCONS_00039752-exon-sc0002189-1575043694:11828..11916Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:11051..11088TCONS_00039752-exon-sc0002189-1575043694:11051..11088Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:10673..10754TCONS_00039752-exon-sc0002189-1575043694:10673..10754Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:10261..10337TCONS_00039752-exon-sc0002189-1575043694:10261..10337Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:9809..9864TCONS_00039752-exon-sc0002189-1575043694:9809..9864Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:9289..9417TCONS_00039752-exon-sc0002189-1575043694:9289..9417Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:8526..8601TCONS_00039752-exon-sc0002189-1575043694:8526..8601Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:7757..7855TCONS_00039752-exon-sc0002189-1575043694:7757..7855Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:6910..7004TCONS_00039752-exon-sc0002189-1575043694:6910..7004Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:5451..5555TCONS_00039752-exon-sc0002189-1575043694:5451..5555Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:4734..4801TCONS_00039752-exon-sc0002189-1575043694:4734..4801Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:3947..4046TCONS_00039752-exon-sc0002189-1575043694:3947..4046Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1575043694:2884..3485TCONS_00039752-exon-sc0002189-1575043694:2884..3485Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:16535..16561TCONS_00039752-exon-sc0002189-1510915933:16535..16561Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:16120..16238TCONS_00039752-exon-sc0002189-1510915933:16120..16238Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:15822..15914TCONS_00039752-exon-sc0002189-1510915933:15822..15914Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:15345..15395TCONS_00039752-exon-sc0002189-1510915933:15345..15395Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:14659..14699TCONS_00039752-exon-sc0002189-1510915933:14659..14699Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:13490..13571TCONS_00039752-exon-sc0002189-1510915933:13490..13571Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:12887..13012TCONS_00039752-exon-sc0002189-1510915933:12887..13012Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:11828..11916TCONS_00039752-exon-sc0002189-1510915933:11828..11916Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:11051..11088TCONS_00039752-exon-sc0002189-1510915933:11051..11088Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:10673..10754TCONS_00039752-exon-sc0002189-1510915933:10673..10754Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:10261..10337TCONS_00039752-exon-sc0002189-1510915933:10261..10337Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:9809..9864TCONS_00039752-exon-sc0002189-1510915933:9809..9864Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:9289..9417TCONS_00039752-exon-sc0002189-1510915933:9289..9417Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:8526..8601TCONS_00039752-exon-sc0002189-1510915933:8526..8601Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:7757..7855TCONS_00039752-exon-sc0002189-1510915933:7757..7855Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:6910..7004TCONS_00039752-exon-sc0002189-1510915933:6910..7004Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:5451..5555TCONS_00039752-exon-sc0002189-1510915933:5451..5555Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:4734..4801TCONS_00039752-exon-sc0002189-1510915933:4734..4801Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:3947..4046TCONS_00039752-exon-sc0002189-1510915933:3947..4046Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1510915933:2884..3485TCONS_00039752-exon-sc0002189-1510915933:2884..3485Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:16535..16561TCONS_00039752-exon-sc0002189-1491911889:16535..16561Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:16120..16238TCONS_00039752-exon-sc0002189-1491911889:16120..16238Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:15822..15914TCONS_00039752-exon-sc0002189-1491911889:15822..15914Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:15345..15395TCONS_00039752-exon-sc0002189-1491911889:15345..15395Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:14659..14699TCONS_00039752-exon-sc0002189-1491911889:14659..14699Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:13490..13571TCONS_00039752-exon-sc0002189-1491911889:13490..13571Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:12887..13012TCONS_00039752-exon-sc0002189-1491911889:12887..13012Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:11828..11916TCONS_00039752-exon-sc0002189-1491911889:11828..11916Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:11051..11088TCONS_00039752-exon-sc0002189-1491911889:11051..11088Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:10673..10754TCONS_00039752-exon-sc0002189-1491911889:10673..10754Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:10261..10337TCONS_00039752-exon-sc0002189-1491911889:10261..10337Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:9809..9864TCONS_00039752-exon-sc0002189-1491911889:9809..9864Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:9289..9417TCONS_00039752-exon-sc0002189-1491911889:9289..9417Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:8526..8601TCONS_00039752-exon-sc0002189-1491911889:8526..8601Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:7757..7855TCONS_00039752-exon-sc0002189-1491911889:7757..7855Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:6910..7004TCONS_00039752-exon-sc0002189-1491911889:6910..7004Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:5451..5555TCONS_00039752-exon-sc0002189-1491911889:5451..5555Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:4734..4801TCONS_00039752-exon-sc0002189-1491911889:4734..4801Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:3947..4046TCONS_00039752-exon-sc0002189-1491911889:3947..4046Clytia hemisphaericaexon
TCONS_00039752-exon-sc0002189-1491911889:2884..3485TCONS_00039752-exon-sc0002189-1491911889:2884..3485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002189supercontigsc0002189:2884..16561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 2.09804e-09 0 0 0 0 2.29973e-10 0 0 1.86509 0.21376 0 0.271569 2.40843e-07 7.31454e-05 0 0.000132139 0.222931 0 0 0.0185487 0 0 0 0.324765 0.373147 0 0
Blast
BLAST of TCONS_00039752 vs. Swiss-Prot (Human)
Match: DPOLA (DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2)

HSP 1 Score: 530.02 bits (1364), Expect = 6.341e-170
Identity = 273/437 (62.47%), Postives = 345/437 (78.95%), Query Frame = 3
Query:    3 GLVLEPKKGFYDKFILLLDFNSLYPSIIQEYNICFTTIAR---EMKKSVIEGE-ELLPDVPESGLEFGILPTEIKRLVERRRQVKKLLKTVTEGSELYLQYDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTGKGREILMKTKDLASNLGLDVIYGDTDSIMINTNCDDWNEVRKIGTKVKQEVNKLYKMIEIDIDGIFKSMLLLKKKKYAAGMILDRKPDGTFVEKREMKGLDIVRRDWSDLAKDAGNYVLGEILSAKSRDVIVENIHDYLRNLKDQIDNDQVDQSKYEIHKSLTKNPEEYPDKKSLPHVTVALRLKTQ-GRRVAVGDTISYVICDDSSKLAATQRAYHLEELTKSTSLKIDKQYYLSSQIHPLVSRLCDPIEGTDATFIAESLGLDPTQYKSATNHHGGDDPNVSVL-----MTDEERFKE 1283
            GLVL+PK GFYDKFILLLDFNSLYPSIIQE+NICFTT+ R   E +K   +GE E +P++P+  LE GILP EI++LVERR+QVK+L+K      +L LQYDIRQKALKLTANSMYGCLGFS+SRFYAKPLAALVT KGREILM TK++   + L+VIYGDTDSIMINTN  +  EV K+G KVK EVNKLYK++EIDIDG+FKS+LLLKKKKYAA ++++   DG +V K+E+KGLDIVRRDW DLAKD GN+V+G+ILS +SRD IVENI   L  + + + N  V  S++EI+K+LTK+P++YPDKKSLPHV VAL + +Q GR+V  GDT+SYVIC D S L A+QRAY  E+L K  +L ID QYYL+ QIHP+V+R+C+PI+G DA  IA  LGLDPTQ++   +H+  D+ N ++L     +TDEE++++
Sbjct:  842 GLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAA-LVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDPTQFR--VHHYHKDEENDALLGGPAQLTDEEKYRD 1275          
The following BLAST results are available for this feature:
BLAST of TCONS_00039752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLA6.341e-17062.47DNA polymerase alpha catalytic subunit OS=Homo sap... [more]
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