TCONS_00039718 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039718
Unique Name	TCONS_00039718
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	670

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002178:19492..22338+

transcript sequence

>TCONS_00039718 ID=TCONS_00039718|Name=TCONS_00039718|organism=Clytia hemisphaerica|type=transcript|length=670bp
NTAACGATGGAGCCAGCTGAATTTTCTACTCCAAAGCCATCAATGCAACC
ATGCAATGCTGAAAGCCCCAACACCCCCTCAAGACGAAGCTCAAAgacaa
caaaaacaacaccaTGCAATGCTGAAAGCCCTAACACCCCCTCAAGACGA
AGCTCAAAGACAACACCAACACCAGCCAAGAAAAGGAAGCAGTATGACAC
ATCCATGTTTTTGGAGGAGTCGTGTagtgatgatgaagaaaataacAACT
CTAGATTGGAGCTCTCATCAATTAATGATTCTAGGGAAGATAGTCAGCAG
AAAGAAGaaaTTACCACTATGAAGAAGATGTTGAGCAACATTACCAATAA
AATTGCTAAAGTTGAAAAGCAGAATGAATTATTGCAGTCAAAAGTTTGAG
AACTTTCTAACAAGACGTCGAAAAAGAAGCGATTTGTTGCCAGCAATGAA
ATCAAGacCCTTGTCCGTGATACTCTGAAGGAGGAATCTGGGAAAGAAGG
TTTTAAACCTTGGATATTGACAGAAACGAAtcCATTCACTGAAGCAAATA
GAGAATTGTCCAAACGAATCTTGGAACTTGTAAAAGGCACAAGCCCTGAA
ACTTCATCTGAAGAAATCACAAATGCAATACACATTCGTTTCAAGTCCAT
TAGAGACACAAATCGGCGAC

Run BLAST on NCBI

transcript from alignment at sc0002178:19492..22338+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039718 ID=TCONS_00039718|Name=TCONS_00039718|organism=Clytia hemisphaerica|type=transcript|length=2847bp|location=Sequence derived from alignment at sc0002178:19492..22338+ (Clytia hemisphaerica)
NTAACGATGGAGCCAGCTGAATTTTCTACTCCAAAGCCATCAATGCAACC
ATGCAATGCTGAAAGCCCCAACACCCCCTCAAGACGAAGCTCAAAgacaa
caaaaacaacaccaTGCAATGCTGAAAGCCCTAACACCCCCTCAAGACGA
AGCTCAAAGACAACACCAACACCAGCCAAGAAAAGGAAGCAGTATGACAC
ATCCATGTTTTTGGAGGAGTCGTGTagtgatgatgaagaaaataacAACT
CTAGATTGGAGCTCTCATCAATTAATGATTCTAGGGAAGATAGTCAGCAG
AAAGAAGGTATTTGATGTTTATAGTCAATTCCCTGATACTCTCctaataa
ctttttttcaaatcataataAAAGAGGGGACAATTGCTACTGGGGTGAAA
TTGTACCTCTGAAACCCTTGAAAAACAGGCTAGATGTATTAAGCTGAAAT
CAGGaaatttagagcaaaataaaggACTTTCTTCTTTGGCAGCCAAAAAA
TTGTCATAATTTAACAAGAGGGGGTCAATCTTTTAAGCCAAATGctggta
aatatttttttttactttttactattttttttaacagaaaTTACCACTAT
GAAGAAGATGTTGAGCAACATTACCAATAAAATTGCTAAAGTTGAAAAGC
AGAATGAATTATTGCAGTCAAAAGTTTGAGAACTTTCTAACAAGACGTCG
AAAAAGAAGCGATTTGTTGCCAGCAATGAAATCAAGGTAaagccattttt
caaaatttgattggtattactgttttaaagttttatacTACCTAGTCATG
CTAACAGTAGTATAAATACACAACTTCTTACAAATGTGAGAATCAACTGG
CCTCGTACTTGTTCAAAATCAGGTTTCTGGACACGaacagaaaatatttt
agatTGATTCTTGTGCGGCAATGGCATTTCTTTTTAAGAGGATTATTTTT
GAAAGCATCAACTGTTTTTTTACCAAGATTGGGGAAACTTTGGGAGTTTT
TCCACATAAGTATTTTTTCTACcgtacaaaaatttttttcattcagacCC
TTGTCCGTGATACTCTGAAGGAGGAATCTGGGAAAGAAGGTTTTAAACCT
TGGATATTGACAGAAACGAAGTGAGTATAATTTAAACTAAATTGAAAGGG
AATTggtcccggggggggtactagggcaagatgggttacggggatgctcc
gctggtcagggtaccttatttaacctccacgagtcccaggtaaggttgca
aaaacaccaaaataaaacaatcagtccctcgtagggtgcctatttttgga
aaatttggggaaaaagtagaaaatttgagaaaattttggaatttcagtcc
cattcagggtcactttttTCACAAATTTCGAGTCCCACatagggtccatt
tttcgaacctcagcggagcacccccgtcggttgacaagggtagtaccccc
ccgcaATTGGTTTACCAAATTCTGGCCTTTAAGAAAAGCACCAAATGATT
ATTTAGGAACAAATTCAATAGGCAGTCCCAATCTCCTATTTGATTGGCAA
GTCTTTCAATAAGAGGTGTGTGTTCGTCAATCTTGTATGGTGAGCAGAAA
GTTATGTGCCTGAATTATTATATTATGATTCTGTAaaaagatttctataa
aaaattatGCGCATATTTTGTAAAGATTTCTTGCATTTCATTCATGTTAT
GTTCATTCACTACATGGATGTTGTGTCACTCTCCTACTTGTTGAAAAGCC
TGATTTGATTACCACTTTGCttataaaagttaaattttcattttagtcCA
TTCACTGAAGCAAATAGAGAATTGTCCAAACGAATCTTGGAACTTGTAAA
AGGCACAAGCCCTGAAACTTCATCTGAAGAAATCACAAGTAAAGACTTGA
ATTTATTctatgattttttaaaatagGAGCCTGTGAAAGCATGCTTATAA
GAGGGTGGCACTTAATGGAGGAAATATACCGTCAATCGGGGTTACTTTCA
TAAGCAGGGGGTAACTTTCATCAACTCCAAACAGCAGATTtttcgaatct
caatcgaacgtcaaaattctgagtaatattcgattggtttgattgttgTT
TGACTGCATTCGATTATCGTTCGATAGCGTTTAACGTAAAGCAAAGAAGA
GTCTTTGACGCCCTTTGATGTCCCGTCGGGATCAACTACCATAAGAGTTA
GGGAACTCAACTGTAAGTAAGGCAGAATTCTGTAATCCAAACATccgaac
gcaatcaaacatcaatcgaacgcaatcgaacatcaatcgaacgcaatcga
atatcaatcgaatctgaaaattgcggtaatattcgattgagattcgattg
cgtttaacaatcgaatttcaatcgtcgattgcgttcgatttggttcgacc
ggttcgatcgtcgattccgttcgattgagatcgtctggtaatTGAATGTA
AATAGAATGCAAACAAGTTGTAAATAagttgtttttctttacttttacaA
ATTGCAGACCAGAAAAATCTGCTGTTTGAAGTTGATTAAAGTTACCCCTC
ATTTATGAAAGTAACCCCGATTGACGGTAGTACTGTTTAAACAGGCAACC
CTCACACCATACATCCACATTCCAACCTATTAAGTTATTTTGGGTCTGAC
TTCAAAGATCTTTCTTTTGATAGCCTATTTTCGAGCTTTTATCCTTGGCT
CAACAAAGTTGATTCActttccaaatatatttttttcttgcatTTTACTT
CCGACCAAATCAGTCAGTCTGTATcatgattttaattttatttattcaGA
TGCAATACACATTCGTTTCAAGTCCATTAGAGACACAAATCGGCGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024018	XLOC_024018	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002178	supercontig	sc0002178:19492..22338 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.75279	2.31287	1.71463	0.766803	19.1531	15.4329	3.4101	4.85573	5.00248	3.03519	2.25403	3.76032	1.95245	1.85757	1.87626	1.58465	1.80535	0.888741	1.48863	1.58989	1.35624	0.979011	0.601808	1.11242	9.85652	10.6471	0.90727	0.353144	1.18704	1.35908

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00039718 vs. Swiss-Prot (Human)

BLAST of TCONS_00039718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00039718 (transcript) - C. hemisphaerica