TCONS_00039717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039717
Unique NameTCONS_00039717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039717 ID=TCONS_00039717|Name=TCONS_00039717|organism=Clytia hemisphaerica|type=transcript|length=848bp
ccgaatttttttccaaaattgcaAATCAGTGCTCATTGTAACTTTGAACA
CCGTCAAGTCAAGTCGAGCAGGAGCAGTCAATGCAGTGCAGTCCAAAGTG
AAGATGGAAGCATTTAAGAAGTTTTCCCTAACTCATTTCCAAAAGCACAA
GGGCCATCCTAAAAGCCCCTACGATCCGATAACGATGGAGCCAGCTGAAT
TTTCTACTCCAAAGCCATCAATGCAACCATGCAATGCTGAAAGCCCCAAC
ACTCCCTCAAGACGAAGCTCAAAgacaacaaaaacaacaccaTGCAATGC
TGAAAGCCCTAACACCCCCTCAAGACGGAGCTCAAAGACAACACCAACAC
CAGCCAAGAAAAGGAAGCAGTATGACACATCCATGTTTTTGGAGGAGTCG
TGTagtgatgatgaagaaaataacAACTCTAGATTGGAGCTCTCATCAAT
TAATGATTCTAGGGAAGATAGTCAGCAGAAAGAAGaaaTTACCACTATGA
AGAAGATGTTGAGCAACATTACCAATAAAATTGCTAAAGTTGAAAAGCAG
AATGAATTATTGCAGTCAAAAGTTTGAGAACTTTCTAACAAGACGTCGAA
AAAGAAGCGATTTGTTGCCAGCAATGAAATCAAGacCCTTGTCCGTGATA
CTCTGAAGGAGGAATCTGGGAAAGAAGGTTTTAAACCTTGGATATTGACA
GAAACGAAtcCATTCACTGAAGCAAATAGAGAATTGTCCAAACGAATCTT
GGAACTTGTAAAAGGCACAAGCCCTGAAACTTCATCTGAAGAAATCACAA
ATGCAATACACATTCGTTTCAAGTCCATTAGAGACACAAATCGGCGAC
Run BLAST on NCBI

protein sequence of TCONS_00039717-protein

>TCONS_00039717-protein ID=TCONS_00039717-protein|Name=TCONS_00039717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
RIFFQNCKSVLIVTLNTVKSSRAGAVNAVQSKVKMEAFKKFSLTHFQKHK
GHPKSPYDPITMEPAEFSTPKPSMQPCNAESPNTPSRRSSKTTKTTPCNA
ESPNTPSRRSSKTTPTPAKKRKQYDTSMFLEESCSDDEENNNSRLELSSI
NDSREDSQQKEEITTMKKMLSNITNKIAKVEKQNELLQSKV
Run BLAST on NCBI

transcript from alignment at sc0002178:17329..22338+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039717 ID=TCONS_00039717|Name=TCONS_00039717|organism=Clytia hemisphaerica|type=transcript|length=5010bp|location=Sequence derived from alignment at sc0002178:17329..22338+ (Clytia hemisphaerica)
ccgaatttttttccaaaattgcaAATCAGTGCTCATTGTAACTTTGAACA
CCGTCAAGTCAAGTCGAGCAGGAGCAGTCAATGCAGTGCAGTCCAAAGTG
AAGATGGAAGCATTTAAGAAGTTTTCCCTAACTCATTTCCAAAAGCACAA
GGGCCATCCTAAAAGCCCCTACGATCCGATAACGATGGAGCCAGCTGAAT
TTTCTACTCCAAAGCCATCAATGCAACCATGCAATGCTGAAAGCCCCAAC
ACTCCCTCAAGACGAAGCTCAAAgacaacaaaaacaacaccaTGCAATGC
TGAAAGCCCTAACACCCCCTCAAGACGGAGCTCAAAGACAACACCAACAC
CAGCCAAGAAAAGGAAGCAGTATGACACATCCATGTTTTTGGAGGAGTCG
TGTagtgatgatgaagaaaataacAACTCTAGATTGGAGCTCTCATCAAT
TAATGATTCTAGGGAAGATAGTCAGCAGAAAGAAGGTATTTGATGTGTAT
AGTCAATTCCCTGATACTCTCctaataactttttttcaaatcataataAA
AGAGGGGACAATTGCTACTGGGGTGAAATTGTACCTCTGAAACCCTTGAA
AAACAGGCTAGATGTATTAAGCTGAAATCAGGaaatttagagcaaaataa
aggACTTTCTTCTTTGGCAGCCAAAAAATTGTCATAATTTAACAAGAGGG
GGGTCAATCTTTTAAGCCAAATGCtggtaaatatttctttttactttttt
actattttttttaacagaaaTTACCACTATGAAGAAGATGTTGAGCAACA
TTACCAATAAAATTGCTAAAGTTGAAAAGCAGAATGAATTATTGCAGTCA
AANGACCTGTTagattctatgttaaaaacctactctttatacacgttttt
cgcgtttttcgtaaaGCATAACGTGATATCATCaacatttccaggctaaa
aaactACAGCATTGCATAAACATTAAACCTCAATACCTGGAAAACCGACC
AAAAGAATCGACGACGAGAGTTATGCTTGAATTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTAACGATGGAGCCAGCTGAATTTTCTACTCCAAAGC
CATCAATGCAACCATGCAATGCTGAAAGCCCCAACACCCCCTCAAGACGA
AGCTCAAAgacaacaaaaacaacaccaTGCAATGCTGAAAGCCCTAACAC
CCCCTCAAGACGAAGCTCAAAGACAACACCAACACCAGCCAAGAAAAGGA
AGCAGTATGACACATCCATGTTTTTGGAGGAGTCGTGTagtgatgatgaa
gaaaataacAACTCTAGATTGGAGCTCTCATCAATTAATGATTCTAGGGA
AGATAGTCAGCAGAAAGAAGGTATTTGATGTTTATAGTCAATTCCCTGAT
ACTCTCctaataactttttttcaaatcataataAAAGAGGGGACAATTGC
TACTGGGGTGAAATTGTACCTCTGAAACCCTTGAAAAACAGGCTAGATGT
ATTAAGCTGAAATCAGGaaatttagagcaaaataaaggACTTTCTTCTTT
GGCAGCCAAAAAATTGTCATAATTTAACAAGAGGGGGTCAATCTTTTAAG
CCAAATGctggtaaatatttttttttactttttactattttttttaacag
aaaTTACCACTATGAAGAAGATGTTGAGCAACATTACCAATAAAATTGCT
AAAGTTGAAAAGCAGAATGAATTATTGCAGTCAAAAGTTTGAGAACTTTC
TAACAAGACGTCGAAAAAGAAGCGATTTGTTGCCAGCAATGAAATCAAGG
TAaagccatttttcaaaatttgattggtattactgttttaaagttttata
cTACCTAGTCATGCTAACAGTAGTATAAATACACAACTTCTTACAAATGT
GAGAATCAACTGGCCTCGTACTTGTTCAAAATCAGGTTTCTGGACACGaa
cagaaaatattttagatTGATTCTTGTGCGGCAATGGCATTTCTTTTTAA
GAGGATTATTTTTGAAAGCATCAACTGTTTTTTTACCAAGATTGGGGAAA
CTTTGGGAGTTTTTCCACATAAGTATTTTTTCTACcgtacaaaaattttt
ttcattcagacCCTTGTCCGTGATACTCTGAAGGAGGAATCTGGGAAAGA
AGGTTTTAAACCTTGGATATTGACAGAAACGAAGTGAGTATAATTTAAAC
TAAATTGAAAGGGAATTggtcccggggggggtactagggcaagatgggtt
acggggatgctccgctggtcagggtaccttatttaacctccacgagtccc
aggtaaggttgcaaaaacaccaaaataaaacaatcagtccctcgtagggt
gcctatttttggaaaatttggggaaaaagtagaaaatttgagaaaatttt
ggaatttcagtcccattcagggtcactttttTCACAAATTTCGAGTCCCA
Catagggtccatttttcgaacctcagcggagcacccccgtcggttgacaa
gggtagtacccccccgcaATTGGTTTACCAAATTCTGGCCTTTAAGAAAA
GCACCAAATGATTATTTAGGAACAAATTCAATAGGCAGTCCCAATCTCCT
ATTTGATTGGCAAGTCTTTCAATAAGAGGTGTGTGTTCGTCAATCTTGTA
TGGTGAGCAGAAAGTTATGTGCCTGAATTATTATATTATGATTCTGTAaa
aagatttctataaaaaattatGCGCATATTTTGTAAAGATTTCTTGCATT
TCATTCATGTTATGTTCATTCACTACATGGATGTTGTGTCACTCTCCTAC
TTGTTGAAAAGCCTGATTTGATTACCACTTTGCttataaaagttaaattt
tcattttagtcCATTCACTGAAGCAAATAGAGAATTGTCCAAACGAATCT
TGGAACTTGTAAAAGGCACAAGCCCTGAAACTTCATCTGAAGAAATCACA
AGTAAAGACTTGAATTTATTctatgattttttaaaatagGAGCCTGTGAA
AGCATGCTTATAAGAGGGTGGCACTTAATGGAGGAAATATACCGTCAATC
GGGGTTACTTTCATAAGCAGGGGGTAACTTTCATCAACTCCAAACAGCAG
ATTtttcgaatctcaatcgaacgtcaaaattctgagtaatattcgattgg
tttgattgttgTTTGACTGCATTCGATTATCGTTCGATAGCGTTTAACGT
AAAGCAAAGAAGAGTCTTTGACGCCCTTTGATGTCCCGTCGGGATCAACT
ACCATAAGAGTTAGGGAACTCAACTGTAAGTAAGGCAGAATTCTGTAATC
CAAACATccgaacgcaatcaaacatcaatcgaacgcaatcgaacatcaat
cgaacgcaatcgaatatcaatcgaatctgaaaattgcggtaatattcgat
tgagattcgattgcgtttaacaatcgaatttcaatcgtcgattgcgttcg
atttggttcgaccggttcgatcgtcgattccgttcgattgagatcgtctg
gtaatTGAATGTAAATAGAATGCAAACAAGTTGTAAATAagttgtttttc
tttacttttacaAATTGCAGACCAGAAAAATCTGCTGTTTGAAGTTGATT
AAAGTTACCCCTCATTTATGAAAGTAACCCCGATTGACGGTAGTACTGTT
TAAACAGGCAACCCTCACACCATACATCCACATTCCAACCTATTAAGTTA
TTTTGGGTCTGACTTCAAAGATCTTTCTTTTGATAGCCTATTTTCGAGCT
TTTATCCTTGGCTCAACAAAGTTGATTCActttccaaatatatttttttc
ttgcatTTTACTTCCGACCAAATCAGTCAGTCTGTATcatgattttaatt
ttatttattcaGATGCAATACACATTCGTTTCAAGTCCATTAGAGACACA
AATCGGCGAC

Coding sequence (CDS) from alignment at sc0002178:17329..22338+

>TCONS_00039717 ID=TCONS_00039717|Name=TCONS_00039717|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0002178:17329..22338+ (Clytia hemisphaerica)
cgaatttttttccaaaattgcaAATCAGTGCTCATTGTAACTTTGAACAC
CGTCAAGTCAAGTCGAGCAGGAGCAGTCAATGCAGTGCAGTCCAAAGTGA
AGATGGAAGCATTTAAGAAGTTTTCCCTAACTCATTTCCAAAAGCACAAG
GGCCATCCTAAAAGCCCCTACGATCCGATAACGATGGAGCCAGCTGAATT
TTCTACTCCAAAGCCATCAATGCAACCATGCAATGCTGAAAGCCCCAACA
CTCCCTCAAGACGAAGCTCAAAgacaacaaaaacaacaccaTGCAATGCT
GAAAGCCCTAACACCCCCTCAAGACGGAGCTCAAAGACAACACCAACACC
AGCCAAGAAAAGGAAGCAGTATGACACATCCATGTTTTTGGAGGAGTCGT
GTagtgatgatgaagaaaataacAACTCTAGATTGGAGCTCTCATCAATT
AATGATTCTAGGGAAGATAGTCAGCAGAAAGAAGaaaTTACCACTATGAA
GAAGATGTTGAGCAACATTACCAATAAAATTGCTAAAGTTGAAAAGCAGA
ATGAATTATTGCAGTCAAAAGTTTGAcgaatttttttccaaaattgcaAA
TCAGTGCTCATTGTAACTTTGAACACCGTCAAGTCAAGTCGAGCAGGAGC
AGTCAATGCAGTGCAGTCCAAAGTGAAGATGGAAGCATTTAAGAAGTTTT
CCCTAACTCATTTCCAAAAGCACAAGGGCCATCCTAAAAGCCCCTACGAT
CCGATAACGATGGAGCCAGCTGAATTTTCTACTCCAAAGCCATCAATGCA
ACCATGCAATGCTGAAAGCCCCAACACTCCCTCAAGACGAAGCTCAAAga
caacaaaaacaacaccaTGCAATGCTGAAAGCCCTAACACCCCCTCAAGA
CGGAGCTCAAAGACAACACCAACACCAGCCAAGAAAAGGAAGCAGTATGA
CACATCCATGTTTTTGGAGGAGTCGTGTagtgatgatgaagaaaataacA
ACTCTAGATTGGAGCTCTCATCAATTAATGATTCTAGGGAAGATAGTCAG
CAGAAAGAAGaaaTTACCACTATGAAGAAGATGTTGAGCAACATTACCAA
TAAAATTGCTAAAGTTGAAAAGCAGAATGAATTATTGCAGTCAAAAGTTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024018XLOC_024018Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039717-proteinTCONS_00039717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039717-exon-sc0002178-1491911889:17329..17813TCONS_00039717-exon-sc0002178-1491911889:17329..17813Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1510915933:17329..17813TCONS_00039717-exon-sc0002178-1510915933:17329..17813Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1575043694:17329..17813TCONS_00039717-exon-sc0002178-1575043694:17329..17813Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1491911889:20079..20227TCONS_00039717-exon-sc0002178-1491911889:20079..20227Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1510915933:20079..20227TCONS_00039717-exon-sc0002178-1510915933:20079..20227Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1575043694:20079..20227TCONS_00039717-exon-sc0002178-1575043694:20079..20227Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1491911889:20538..20611TCONS_00039717-exon-sc0002178-1491911889:20538..20611Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1510915933:20538..20611TCONS_00039717-exon-sc0002178-1510915933:20538..20611Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1575043694:20538..20611TCONS_00039717-exon-sc0002178-1575043694:20538..20611Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1491911889:21288..21379TCONS_00039717-exon-sc0002178-1491911889:21288..21379Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1510915933:21288..21379TCONS_00039717-exon-sc0002178-1510915933:21288..21379Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1575043694:21288..21379TCONS_00039717-exon-sc0002178-1575043694:21288..21379Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1491911889:22291..22338TCONS_00039717-exon-sc0002178-1491911889:22291..22338Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1510915933:22291..22338TCONS_00039717-exon-sc0002178-1510915933:22291..22338Clytia hemisphaericaexon
TCONS_00039717-exon-sc0002178-1575043694:22291..22338TCONS_00039717-exon-sc0002178-1575043694:22291..22338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002178supercontigsc0002178:17329..22338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93082	1.30919	0.272209	0.307826	3.01394	2.41578	1.53749	0.457205	1.25678	2.01714	2.64977	2.75968	0.718832	1.82013	0.557033	0.431254	1.1983	0.725862	0	0.603557	0.900376	0.786162	0.457057	0.605052	3.89668	2.31658	1.70549	0.638955	1.28924	0.903052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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