TCONS_00039709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039709
Unique NameTCONS_00039709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039709 ID=TCONS_00039709|Name=TCONS_00039709|organism=Clytia hemisphaerica|type=transcript|length=885bp
TGTATAATAGATCCATTTGGTGAGAGTTCTGCTCTATTGACAGAAACCAA
GCAAGCTTGGGAAGCATTTATGACAAGAAACTTTGATGCGAACCAAACTT
GGAAAATTGTTTGTAAAAAACATGCCTTGCAGAAAGACATCATATCATGC
GGAGTGTTTTGCCTGAAGTTTGCCGAGGCCATGTTAAAAGAAGAAGATTT
ACCAACAAAACTTCCCCCAAAAGAGCTCCGTGATTACCGTCGTAAAATTG
CCATTACGTTGATAGAAATTGGAGGTAACGACGACTGGTGTGGTGAAGTT
TGCCGCTTATGTGACAGGACGTCTCCCCCACCGTCGAAACGATTTGGATC
AAATCCGAAAGAATGGGGATGGGTTTGTTGTGACTTCTGCAAACCAGTCA
AGTGGTATCACGGTGTTTGTTTGGGCATACGCGGTAGGACAGAATACCTC
AGTGAAATAAGCTATTTTTGCGGAAAGAAACTTGTTCAGGATGAAATCTT
CACTCTAAAATTAGGTGAAACTTTGATTCGCCAACGGACAAATAGGACGG
TCCGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCACTTAAG
CCTCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATGGCAGG
TGGCTCTTGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCACTTCC
ATGCCAAGCCACGATGTGTTGGAAAGCTAGATCCCAAGAAAGTCAAGCTC
TCAAGAGAATTCAACGATCTTGATGATTCGCATCAGGAGCAACTGCGACT
TCTTGGTATCGATATGAATACTTTAGACTGATATTGTCTTGTTTTTTAGT
TACATAGTTTTTTAGTGGTTTTTAACAAGTGTATA
Run BLAST on NCBI

protein sequence of TCONS_00039709-protein

>TCONS_00039709-protein ID=TCONS_00039709-protein|Name=TCONS_00039709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
CIIDPFGESSALLTETKQAWEAFMTRNFDANQTWKIVCKKHALQKDIISC
GVFCLKFAEAMLKEEDLPTKLPPKELRDYRRKIAITLIEIGGNDDWCGEV
CRLCDRTSPPPSKRFGSNPKEWGWVCCDFCKPVKWYHGVCLGIRGRTEYL
SEISYFCGKKLVQDEIFTLKLGETLIRQRTNRTVRKCFTCKGSLRDEPLK
PPHDMVLVQLKERPMAGGSWADKDSLISTSVHFHAKPRCVGKLDPKKVKL
SREFNDLDDSHQEQLRLLGIDMNTLD
Run BLAST on NCBI

transcript from alignment at sc0002174:15235..21056+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039709 ID=TCONS_00039709|Name=TCONS_00039709|organism=Clytia hemisphaerica|type=transcript|length=5822bp|location=Sequence derived from alignment at sc0002174:15235..21056+ (Clytia hemisphaerica)
TGTATAATAGATCCATTTGGTGAGAGTTCTGCTCTATTGACAGAAACCAA GCAAGCTTGGGAGTAAGTTCAAATACTGTATATTTTCCTTTAAACCAAGA TACAGTACTTTATTGTGATTTTTACATTTCCATTTGGATTTTATATCCAA AACGATTTATATTGACTGATGTATGATTTGTTAGTCCCGAAGAAAATGAT TTCACCCGTTCATAATACTTTTGCACGAGCTACATCTTAAGGAATGTTAC TATCCTTTCAATCCTAAAGTTTCCAGAAATTTCTACTAAGAAATATCATT ATTTCTTCGCTTAAACCTATTTTAATCCTTTTTCACgtgtttttgatttt atttttctcttctccaTTTGCCCcttttatttagaaaaaataaaattatt ttactcTAGAGCATTTATGACAAGAAACTTTGATGCGAACCAAACTTGGA AAATTGTTTGTAAAAAACATGCCTTGCAGAAAGACATCATATCATGCGGA GTGTTTTGCCTGAAGGTGAGTTAGCCTTTATtttaaaatctgtaaaatct aaatACCAATGGAATGAGCATGAAATTCCTATTAAAATTTAGTTACAAGA CGTGcctttattatttttctatcaaaagttatgacgaatGAAGGTTTTCT GATGATGTCATCACAAGCCCTTCCAGGCAAAACTAAAAAATAATCCTAGG ATGCACGATACTAAACTCGAATCTGTAAATTATATGTATAAGGGCCCGTA TATAAAGGGCTCGCATATCAAGCTGACGATTTCTTTTAAGGTTCGTTCTA TAGTAAATTTATTCCAAAAAAGCTAAAAGGTGACATGTTTAATTCCCAAA GATCATGACAGCAGAATAACTTGATAAGAAGATTGTAAATATACGAGTTT AAAATACTTTATAATACTTTTAGCAATTTCTTTACATTAAGATTATTCGT CAAGATTTAATAGACAAACAATTTTACGGAGTTTTCCATACCTTTTGTCA TGGTGTCAATATCTCGTTTCTATATTTCATTAGTTTGCCGAGGCCATGtt aaaagaaaaagatctaccAACAAAACTTCCCCCAAAAGAGCTCCGTGATT ACCGTCGTAAAATTGCCATTACGTTGATAGAAATTGGAGGTATGACTATT TATTATCATCTTTCTAATTTTACTATATTTTAGTCTAAGACAAAGTCACT AACTCAAGATCATTCCAAGCTGGAATCAAACTTCGGGCGGCTTTTTGGAG GAAATTTTTAGTCACCCGATAGATTCAGAAAGTCTTTATATCACTCAGCC TTATAGCCAACTATTTCTCCGTAAACTATAAATTACGTTTTTTATACAAA TATGATATAACATGATAAACgttgtttcaaaaatattggCAGTCTGCACA TATCGGTTAGTTGCTCTCAAAGGAAAGAAAGATACAATTAAAAGTAACaa ctcgttgaaaagataattggtaacttggccaaaatatttttctgacgCTT TGAACNCATATCAAGCTGACGATTTCTTTTAAGGTTCGTTCTATAGTAAA TTTATTCCAAAAAAGCTAAAAAGCGACATGTTTAATTCCCAAAGATCGCG ACAGCAGAATAACTTGATAAGAAGATTGTAAATATACGAGTTTAAAATAC TTTATAATACTTTGAGCAATTTCTTTACATTAAGATTATTCGTCAAGATT TAATAGACAAACAATTTTACGGAGTTTTCCATACCTTTTGTCATGGTGTC AATATCTTGTTTCTATATTTAATTAGTTTGCCGAGGCCATGTTAAAAGAA GAAGATTTACCAACAAAACTTCCCCCAAAAGAGCTCCGTGATTACCGTCG TAAAATTGCCATTACGTTGATAGAAATTGGAGGTATGACTATTTATTATC ATCTTTCTAATTTTACTATCTTTTAGTCTAAGACAAAGTCACTAACTCAA GATCATTCCAAGCTGGAATCAAACTTCGGGTGGCTTTTTGGAGGAAATTT TTAGTCACCCGATAGATTCAGAAAGTCTTTATATCACTCAGCCTTATAGC CAACTACTTCTCCGTAAACTATAAATTACGTTTTTTATACAAATATGATA TAACATGATAAACgttgtttcaaaaatattggCAGTCCGCACATATCGGT TAGTTGCTCTCAAAGGAAAGAAAGATACAATTAAAAGTAACaactcgttg aaaagataattggTAACTTGGCCAACATATTTTTCTGACGCTTTGAACTT CGCTGATTTAGAATATGTATTCAgatttttcatatctttcttCGATCAAA AGAAACGTTCGTACAGGCCTCCGAAGTTGGTCCATTTTGCCTCTGTTGGC CCGTTTTTGACCATTCTAAGCCTACTTTGGAGGCctgaactttttttttg aagaaagatatgaaaaatTGGTAGACATACCCAGAGAAGTCCaaagtttc agaaaaatataaattaagaTATTTTGGCTACTaacaaaaatcttcatttt ttattttcgaattCAATGAAACCTTTTAAAGCTTTAAACtcagaattatc ttttcaacgaggtattacttttgattatatattttttccttCAAGAGAAG TNACCTTTTAAAGCTTTAAACtcagaattatcttttcaacgaggtattac ttttgattatatatttttttccttcaagagAAAGTAAGCAAAATGTGTGG GTTGccaattcttttgaaatataCTACTCGATGCCAATAATCATCGTCTA CTATTAAATCCAATTAAAGTTTGTCAATCCTTTTTTATCAATAACAGTTG AATTTTCGTACCAGAGAATTTTGGGATTGAGGCAGTCTTCGAATGTCTAT CAGAACTTGTACAACTCGATATATTTATGTATTGCTATAGGTAACGACGA CTGGTGTGGTGAAGTTTGCCGCTTATGTGACAGGACGTCTCCCCCACCGT CGAAACGATTTGGATCAAATCCGAAAGAATGGGGATGGGTAATTATGTGA TTGATATTTTATAACCTTGAACCGATTCACTACTACTTTGGTCAATAAAC TTTTGAGTTCCTAAAAAGTAATGCACAGAAGAAACCAAGTGAACAATAAG TTTAGTCTACGTCAGCTCTCTGAAAGAGCGAGGCCCTTCTGTAATGACac tttaagttttgaaatcatcatttttgacATAAACTTAAtataaacttaaa aataaatttcataattGTTTTTTGTGGGATTTTGCCCAAAGATTAAAATT TGAcataaaatgacttttttgagatttaaccagttttttgtttttctttt ttcatcaaatttataagaaaattagcAACTAGTGGACCAAAAGCATATCA TTTAGTGAATTAACTGGAAGTTTTACCACTGAACAATTTCCATTAATCCA GTCACTGGCACTGACTTCTTTAATCACCCTCACCTAACCTCTGGGTATTT AAAGCGGTTAACggtttcaagtttttttaagaTAGACTTATGTATGTTTA TTACCTATCattaaaaatcaccaaaaatccTCAAAGTCTATTCCCGTGTC CATGTCAAAAATAGAATTTACCGCATTCTGGGATCCACAGCCTGCAAAGT GATAATCGATTCTTCCCTATAGTGTAAAAAAAACGACCTCTATTCAGGGN CCGTGTccatgtcaaaaataaaatttaccgCATTCTGGGATCCACAGCCT GCAAAGTGATAATCGATTCTTCCCTATAGTGTAAACAAAACGACCTCTAT TCAGGTTATTCTGTTATTTTTCATTAGTTATCTATTTTTCATCATCATAa ttctatttttgaattttccagGTTTGTTGTGACTTCTGCAAACCAGTCAA GTGGTATCACGGTGTTTGTTTGGGCATACGCGGTAGGACAGAATACCTCA GTGAAATAAGCTATTTTTGCGGAAAGGTAAGTTTTTGCAATAtcttattt tagtttaatgtaatGGCCGAGTATAGAATAATTATACCTGTTGCTACTAC GCTTAGCGTATGAAATTTGACCAGCCACCGTGGTAGTTAATTAGGTCGGT TCGATACTTTGCTCTtaagaaatgacaaaaaataataatacgaCAGAAGA CTATATCCTTTTGATTTCCTGTAGTTTTAAAAGCAATTTTCACTCACCCG ATGAAAGATATAGCTTTTTCAGAATGCGGAATGCGGGtcaaggaaaaaag ctctcatgtgGTCAGCCGGATAAAactctttttgctttttttgataactt ataAGATCATTGATGTACAAACAGTacgaagtaagccctgaatactaatg tatcaactattAACGAAGTCTGTGGCCGGGTCAGCAAAGaatggagagat tctttgatcttggGAGGTAATCACcgtgaagaaatttcacaaaaataatt attcaatataaagctatgatacaaagttaataagtgattgaccccaaaaa aacagcagaaaacagcgtttttagacgtcaatcagcttataactttggtt gatatcttttgactgaataattatttttgagaaatttttcacagagtgac gttcgatgatcaaggattcacttcagtgaaaatgatagttatagcacttt tctacaagattttcatttttttcttcttcattttcaacttcatttttaga atttctttaaaacattttttatttcaaattgttccactcactaatatctc ttttcaatgataccaaatttataaagattgaagaattcctttaaaagtta taggtaaaagaaaaaagagtgcacacttatcgtgaatagactttataatg attgatttttttcttctctcatTCAGAAACTTGTTCAGGATGAAATCTTC ACTCTAAAATTAGGTGAAACTTTGATTCGCCAACGGACAAATAGGACGGT CCGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCACTTAAGC CTCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATGGCAGGT GGCTCTTGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCACTTCCA TGCCAAGCCACGATGTGTTGGAAAGCTAGATCCCAAGAAAGTCAAGCTCT CAAGAGAATTCAACGATCTTGATGATTCGCATCAGGAGCAACTGCGACTT CTTGGTATCGATATGAATACTTTAGACTGATATTGTCTTGTTTTTTAGTT ACATAGTTTTTTAGTGGTTTTTAACAAGTGTCTAAACTTAGActtaaact ttctttttatGACGCTGTATTATATATTTGTATTGTATACCCACtatcat ttgaatatattttttattttacaaaaactcAATTATCATTGTATTTGAta gttgaaagaaaaaatttgtatttgAAAGTCACTAACGATTATTCAGATAA TAGTGAACTGTCccgggtgtccggaaaaaaataatgagtcgaGTCACTTA TATAGgtagaaagttcttgtgtgtgtttcactaactATACAATGGTTTCA CTAACTATACAATGTTTAGAGTAGTCAATGTTTATCTCGCTTTTCTATGT CATTAATTGTCACGAAACATCTTTTACGAATGTCTTTTGCAGAAAACAGT TCTGAATAAATATAACATCattcagtagcgtggtgggttgACTAAAATTC GAGCTTTCCGTGGAGGCAATTTCAGAAGATTtagattttggcgcccccta tgaaaagtaaatatctttttaaagtgtttcaatgttcaaactcgataatT TTTTTCCGACACCCTGTGTTATATCTTTGTTTTTAGTTACATAGTTTTTT AGTGGTTTTTAACAAGTGTATA

Coding sequence (CDS) from alignment at sc0002174:15235..21056+

>TCONS_00039709 ID=TCONS_00039709|Name=TCONS_00039709|organism=Clytia hemisphaerica|type=CDS|length=4986bp|location=Sequence derived from alignment at sc0002174:15235..21056+ (Clytia hemisphaerica)
TGTATAATAGATCCATTTGGTGAGAGTTCTGCTCTATTGACAGAAACCAA
GCAAGCTTGGGAAGCATTTATGACAAGAAACTTTGATGCGAACCAAACTT
GGAAAATTGTTTGTAAAAAACATGCCTTGCAGAAAGACATCATATCATGC
GGAGTGTTTTGCCTGAAGTTTGCCGAGGCCATGTTAAAAGAAGAAGATTT
ACCAACAAAACTTCCCCCAAAAGAGCTCCGTGATTACCGTCGTAAAATTG
CCATTACGTTGATAGAAATTGGAGGTAACGACGACTGGTGTGGTGAAGTT
TGCCGCTTATGTGACAGGACGTCTCCCCCACCGTCGAAACGATTTGGATC
AAATCCGAAAGAATGGGGATGGGTTTGTTGTGACTTCTGCAAACCAGTCA
AGTGGTATCACGGTGTTTGTTTGGGCATACGCGGTAGGACAGAATACCTC
AGTGAAATAAGCTATTTTTGCGGAAAGAAACTTGTTCAGGATGAAATCTT
CACTCTAAAATTAGGTGAAACTTTGATTCGCCAACGGACAAATAGGACGG
TCCGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCACTTAAG
CCTCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATGGCAGG
TGGCTCTTGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCACTTCC
ATGCCAAGCCACGATGTGTTGGAAAGCTAGATCCCAAGAAAGTCAAGCTC
TCAAGAGAATTCAACGATCTTGATGATTCGCATCAGGAGCAACTGCGACT
TCTTGGTATCGATATGAATACTTTAGACTGATGTATAATAGATCCATTTG
GTGAGAGTTCTGCTCTATTGACAGAAACCAAGCAAGCTTGGGAAGCATTT
ATGACAAGAAACTTTGATGCGAACCAAACTTGGAAAATTGTTTGTAAAAA
ACATGCCTTGCAGAAAGACATCATATCATGCGGAGTGTTTTGCCTGAAGT
TTGCCGAGGCCATGTTAAAAGAAGAAGATTTACCAACAAAACTTCCCCCA
AAAGAGCTCCGTGATTACCGTCGTAAAATTGCCATTACGTTGATAGAAAT
TGGAGGTAACGACGACTGGTGTGGTGAAGTTTGCCGCTTATGTGACAGGA
CGTCTCCCCCACCGTCGAAACGATTTGGATCAAATCCGAAAGAATGGGGA
TGGGTTTGTTGTGACTTCTGCAAACCAGTCAAGTGGTATCACGGTGTTTG
TTTGGGCATACGCGGTAGGACAGAATACCTCAGTGAAATAAGCTATTTTT
GCGGAAAGAAACTTGTTCAGGATGAAATCTTCACTCTAAAATTAGGTGAA
ACTTTGATTCGCCAACGGACAAATAGGACGGTCCGGAAGTGTTTCACATG
CAAAGGCTCCTTGAGAGACGAACCACTTAAGCCTCCTCACGATATGGTCT
TGGTTCAGCTCAAAGAGCGACCAATGGCAGGTGGCTCTTGGGCTGACAAA
GATTCGTTGATATCGACATCAGTCCACTTCCATGCCAAGCCACGATGTGT
TGGAAAGCTAGATCCCAAGAAAGTCAAGCTCTCAAGAGAATTCAACGATC
TTGATGATTCGCATCAGGAGCAACTGCGACTTCTTGGTATCGATATGAAT
ACTTTAGACTGATGTATAATAGATCCATTTGGTGAGAGTTCTGCTCTATT
GACAGAAACCAAGCAAGCTTGGGAAGCATTTATGACAAGAAACTTTGATG
CGAACCAAACTTGGAAAATTGTTTGTAAAAAACATGCCTTGCAGAAAGAC
ATCATATCATGCGGAGTGTTTTGCCTGAAGTTTGCCGAGGCCATGTTAAA
AGAAGAAGATTTACCAACAAAACTTCCCCCAAAAGAGCTCCGTGATTACC
GTCGTAAAATTGCCATTACGTTGATAGAAATTGGAGGTAACGACGACTGG
TGTGGTGAAGTTTGCCGCTTATGTGACAGGACGTCTCCCCCACCGTCGAA
ACGATTTGGATCAAATCCGAAAGAATGGGGATGGGTTTGTTGTGACTTCT
GCAAACCAGTCAAGTGGTATCACGGTGTTTGTTTGGGCATACGCGGTAGG
ACAGAATACCTCAGTGAAATAAGCTATTTTTGCGGAAAGAAACTTGTTCA
GGATGAAATCTTCACTCTAAAATTAGGTGAAACTTTGATTCGCCAACGGA
CAAATAGGACGGTCCGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGAC
GAACCACTTAAGCCTCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCG
ACCAATGGCAGGTGGCTCTTGGGCTGACAAAGATTCGTTGATATCGACAT
CAGTCCACTTCCATGCCAAGCCACGATGTGTTGGAAAGCTAGATCCCAAG
AAAGTCAAGCTCTCAAGAGAATTCAACGATCTTGATGATTCGCATCAGGA
GCAACTGCGACTTCTTGGTATCGATATGAATACTTTAGACTGATGTATAA
TAGATCCATTTGGTGAGAGTTCTGCTCTATTGACAGAAACCAAGCAAGCT
TGGGAAGCATTTATGACAAGAAACTTTGATGCGAACCAAACTTGGAAAAT
TGTTTGTAAAAAACATGCCTTGCAGAAAGACATCATATCATGCGGAGTGT
TTTGCCTGAAGTTTGCCGAGGCCATGTTAAAAGAAGAAGATTTACCAACA
AAACTTCCCCCAAAAGAGCTCCGTGATTACCGTCGTAAAATTGCCATTAC
GTTGATAGAAATTGGAGGTAACGACGACTGGTGTGGTGAAGTTTGCCGCT
TATGTGACAGGACGTCTCCCCCACCGTCGAAACGATTTGGATCAAATCCG
AAAGAATGGGGATGGGTTTGTTGTGACTTCTGCAAACCAGTCAAGTGGTA
TCACGGTGTTTGTTTGGGCATACGCGGTAGGACAGAATACCTCAGTGAAA
TAAGCTATTTTTGCGGAAAGAAACTTGTTCAGGATGAAATCTTCACTCTA
AAATTAGGTGAAACTTTGATTCGCCAACGGACAAATAGGACGGTCCGGAA
GTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCACTTAAGCCTCCTC
ACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATGGCAGGTGGCTCT
TGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCACTTCCATGCCAA
GCCACGATGTGTTGGAAAGCTAGATCCCAAGAAAGTCAAGCTCTCAAGAG
AATTCAACGATCTTGATGATTCGCATCAGGAGCAACTGCGACTTCTTGGT
ATCGATATGAATACTTTAGACTGATGTATAATAGATCCATTTGGTGAGAG
TTCTGCTCTATTGACAGAAACCAAGCAAGCTTGGGAAGCATTTATGACAA
GAAACTTTGATGCGAACCAAACTTGGAAAATTGTTTGTAAAAAACATGCC
TTGCAGAAAGACATCATATCATGCGGAGTGTTTTGCCTGAAGTTTGCCGA
GGCCATGTTAAAAGAAGAAGATTTACCAACAAAACTTCCCCCAAAAGAGC
TCCGTGATTACCGTCGTAAAATTGCCATTACGTTGATAGAAATTGGAGGT
AACGACGACTGGTGTGGTGAAGTTTGCCGCTTATGTGACAGGACGTCTCC
CCCACCGTCGAAACGATTTGGATCAAATCCGAAAGAATGGGGATGGGTTT
GTTGTGACTTCTGCAAACCAGTCAAGTGGTATCACGGTGTTTGTTTGGGC
ATACGCGGTAGGACAGAATACCTCAGTGAAATAAGCTATTTTTGCGGAAA
GAAACTTGTTCAGGATGAAATCTTCACTCTAAAATTAGGTGAAACTTTGA
TTCGCCAACGGACAAATAGGACGGTCCGGAAGTGTTTCACATGCAAAGGC
TCCTTGAGAGACGAACCACTTAAGCCTCCTCACGATATGGTCTTGGTTCA
GCTCAAAGAGCGACCAATGGCAGGTGGCTCTTGGGCTGACAAAGATTCGT
TGATATCGACATCAGTCCACTTCCATGCCAAGCCACGATGTGTTGGAAAG
CTAGATCCCAAGAAAGTCAAGCTCTCAAGAGAATTCAACGATCTTGATGA
TTCGCATCAGGAGCAACTGCGACTTCTTGGTATCGATATGAATACTTTAG
ACTGATGTATAATAGATCCATTTGGTGAGAGTTCTGCTCTATTGACAGAA
ACCAAGCAAGCTTGGGAAGCATTTATGACAAGAAACTTTGATGCGAACCA
AACTTGGAAAATTGTTTGTAAAAAACATGCCTTGCAGAAAGACATCATAT
CATGCGGAGTGTTTTGCCTGAAGTTTGCCGAGGCCATGTTAAAAGAAGAA
GATTTACCAACAAAACTTCCCCCAAAAGAGCTCCGTGATTACCGTCGTAA
AATTGCCATTACGTTGATAGAAATTGGAGGTAACGACGACTGGTGTGGTG
AAGTTTGCCGCTTATGTGACAGGACGTCTCCCCCACCGTCGAAACGATTT
GGATCAAATCCGAAAGAATGGGGATGGGTTTGTTGTGACTTCTGCAAACC
AGTCAAGTGGTATCACGGTGTTTGTTTGGGCATACGCGGTAGGACAGAAT
ACCTCAGTGAAATAAGCTATTTTTGCGGAAAGAAACTTGTTCAGGATGAA
ATCTTCACTCTAAAATTAGGTGAAACTTTGATTCGCCAACGGACAAATAG
GACGGTCCGGAAGTGTTTCACATGCAAAGGCTCCTTGAGAGACGAACCAC
TTAAGCCTCCTCACGATATGGTCTTGGTTCAGCTCAAAGAGCGACCAATG
GCAGGTGGCTCTTGGGCTGACAAAGATTCGTTGATATCGACATCAGTCCA
CTTCCATGCCAAGCCACGATGTGTTGGAAAGCTAGATCCCAAGAAAGTCA
AGCTCTCAAGAGAATTCAACGATCTTGATGATTCGCATCAGGAGCAACTG
CGACTTCTTGGTATCGATATGAATACTTTAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024011XLOC_024011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039709-proteinTCONS_00039709-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039709-exon-sc0002174-1491911889:15235..15296TCONS_00039709-exon-sc0002174-1491911889:15235..15296Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1510915933:15235..15296TCONS_00039709-exon-sc0002174-1510915933:15235..15296Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1575043694:15235..15296TCONS_00039709-exon-sc0002174-1575043694:15235..15296Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1491911889:15644..15749TCONS_00039709-exon-sc0002174-1491911889:15644..15749Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1510915933:15644..15749TCONS_00039709-exon-sc0002174-1510915933:15644..15749Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1575043694:15644..15749TCONS_00039709-exon-sc0002174-1575043694:15644..15749Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1491911889:17011..17116TCONS_00039709-exon-sc0002174-1491911889:17011..17116Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1510915933:17011..17116TCONS_00039709-exon-sc0002174-1510915933:17011..17116Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1575043694:17011..17116TCONS_00039709-exon-sc0002174-1575043694:17011..17116Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1491911889:18125..18222TCONS_00039709-exon-sc0002174-1491911889:18125..18222Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1510915933:18125..18222TCONS_00039709-exon-sc0002174-1510915933:18125..18222Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1575043694:18125..18222TCONS_00039709-exon-sc0002174-1575043694:18125..18222Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1491911889:19056..19160TCONS_00039709-exon-sc0002174-1491911889:19056..19160Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1510915933:19056..19160TCONS_00039709-exon-sc0002174-1510915933:19056..19160Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1575043694:19056..19160TCONS_00039709-exon-sc0002174-1575043694:19056..19160Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1491911889:20061..20436TCONS_00039709-exon-sc0002174-1491911889:20061..20436Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1510915933:20061..20436TCONS_00039709-exon-sc0002174-1510915933:20061..20436Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1575043694:20061..20436TCONS_00039709-exon-sc0002174-1575043694:20061..20436Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1491911889:21025..21056TCONS_00039709-exon-sc0002174-1491911889:21025..21056Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1510915933:21025..21056TCONS_00039709-exon-sc0002174-1510915933:21025..21056Clytia hemisphaericaexon
TCONS_00039709-exon-sc0002174-1575043694:21025..21056TCONS_00039709-exon-sc0002174-1575043694:21025..21056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002174supercontigsc0002174:15235..21056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0524819 0.0569852 0.0297113 0 0.0353874 0 0.0674737 0.126336 0.0884509 0.109561 0.159513 0 0.224046 0.0906205 0 0.0871702 0.0590969 0.0807632 0 0 0 0.0416781 0.0337768 0.0547075 0.45078 0.276588 0.107945 0 0 0.032034
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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