TCONS_00039699 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039699
Unique Name	TCONS_00039699
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1216

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002170:7122..13389+

transcript sequence

>TCONS_00039699 ID=TCONS_00039699|Name=TCONS_00039699|organism=Clytia hemisphaerica|type=transcript|length=1216bp
cattcaaaaagatatcaaaataCCGCTTGCTGTtataaaaacacacaaat
tttgcAAGAAAGAATCATTCTCGAGCTGAACTATCAAGCAGAGGACAGCG
CTTCTACAAAAGGTTTACTTTCAAAATAACTACAAGAAAATCCAACTAAA
GATGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCA
CAGGTGCTGGATCAGGCATCGGTCAAGGCACTGCATACATGTTCGCAAAG
TCTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGA
AACGGCAAACAAATGTGAAGAATTAAGCAAGCAAAAGGCTCTGGCAATTG
TTGGAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAACACAACC
ATGGATACTTTCAAACGTCTCGATGTCTTGATCTGTTTTTCTTATCACCA
AGATGGCTATCCCGCATTTGAAGAAAACTCAAGGCAACATTGTCAATGTT
TCGACCCTTGGTAGCTCGAGAccaCAAATTGGAGTAAATGCATATTGTAC
CAGCAAAGCAGCTTTGGATCAATTTACGCGAGCTACTGCAATTGAGTTAG
GAGCTGACCAAGTTCGTGTCAATTGTGTCAACCCGAGCATTATTGCTACG
GAAAATACCTCAAGTAGCAACCATCCCACAATCTCAAGTGCAATGGAAAG
AAGCAAAGACGTGCACGCCCTGGGACGTGCTGGTACAGTTGACGAGGTAG
CCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGGA
GCATGCATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGAT
CTTCAACAATACGATATTTACAGTCTGTAACatggattaaaaaaaaattc
taccaaCAAAATCGAAGTACTTTGATTTCTTTGAACAGTGTGATTTTTAA
TGTTAGCTTactattttgtgaattttttgtGGTTTTGGGTGAAGCACTCT
TTTGtatattgtcaattttttcacttttctataaaagcaaatatctttgg
aaataatttttttactatGGTTGAATAAGAAATAAAAACGAAATACAAAA
AATTTACATGGTCGTATTAATTGATGCATCGAGAAGGAACTGAGAAGtga
ataatttcaatttgaagataattattttttggggaattaaAGGGGAAGGC
TCCGCTTACGCTTTTC

Run BLAST on NCBI

transcript from alignment at sc0002170:7122..13389+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039699 ID=TCONS_00039699|Name=TCONS_00039699|organism=Clytia hemisphaerica|type=transcript|length=6268bp|location=Sequence derived from alignment at sc0002170:7122..13389+ (Clytia hemisphaerica)
cattcaaaaagatatcaaaataCCGCTTGCTGTtataaaaacacacaaat
tttgcAAGAAAGAATCATTCTCGAGCTGAACTATCAAGCAGAGGACAGCG
CTTCTACAAAAGGTTTACTTTCAAAATAACTACAAGAAAATCCAACTAAA
GATGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCA
CAGGTTTGTAAAGATAATTTCTTCTATAATATCTTCTACCTCCAAGTTAT
ATACCACTCTATCCCATTGTCATTCATAAAATGTTTCGACCGCTTTTCTG
GGGTCCGTGGCTAAAAACATTAGTGTCGCATCCTTAGGTACAGAAAACAT
CTTGTGTTCAACTAGTAAGTGATTCACTAAGCTGACCTTATCTAGAGCCT
gattgcacgttttttataagaacattcaaaaattttgaagccttgggatg
ttgttaactttttgaaaaaaaaatttttaacatgctcttattttcgccat
tttttgagtacttttgtccattttcctatgaatTTCGGTTTTCTAGAGTC
CGAAaagcctaaagatgttcttcacttgttcttaacatcttGAGAATCGA
AGTCTTtatatatgttcttatatagtttgctcttataaaaaacgtctaTT
ACTATTTTCATTGGAATCCTAGTCCGAAAAGTAGAATCGTAGAATTTGCA
ACATTGCGTGTTAGTAGATCTTCAATTCCCTTGTACACTTCAGAATTCCT
TCTCTCCCAAATAACTTCGAACCATTTTCTGGTATATCCGATACCTTTTA
TAACAGATTATAAGCTTATTGATATAAggattaatcaatttttttttaaa
tatctttatcAGGTGCTGGATCAGGCATCGGTCAAGGCACTGCATACATG
TTCGCAAAGTCTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAA
ATTGAAAGAAACGGCAAACAAATGTGAAGAATTAAGCAAGCAAAAGGTAA
TTCAATTAAAAGCTGAATTAACATTTTCCTCTGTTCGAAAATTAGAACTA
TGATATTTTCCCTGTTTCGGGAGTAGGACAAACCCCTAGAAAAGATTACT
CTAGTACGAAAGAATCCCTAAAAAGACTTGAACTATCCGTCAGGGTGACT
AATGAGTAAAGGATGGCTATTTTTGGAACACCGTGAAAAAATCACGTCCA
TATTTTTGTTTCACGTGAATTTAAACCATCTTGTCATTCAGAAATCCTTC
CattcaaagttttcttttaGTGTTTTTCTTGCCATCTCGGTGCAAAGCTG
ACCTTTCAAACTTTGTaataaacaatcaaaattatcgGAAAATATCCTAC
TGTGGCTGAGAAATTTATGACCGTGATTTTTATTGAGGtgttaacaagcg
aaaaattaAAGTCctaccgtcgttttgtataagattctcatttctgcact
aagattcttgtcagttttccggaatctttccgcTTCTTTTCCCGGCATGA
AATGGAAAGGATTTGTTTCTAAAAGTAccaaaaatcttgtgtttactaaC
TTGCGAAACTACCTCACTTTCCCAAGCTTATTTGTCGACTACCCGAAGTT
CTGGTCATTTTCCGTcagaaaagtggcaaaggaatcttagtgcggaaata
aGAATCTTATACAAGAACGACGATATATTTTTCTCTACACAGACTCAGAT
TTTTACTAAGAAACAAGTTCCACCAGCAATTATATATCTATAGGCGCTTA
TCCATTTTCAACATATAAAAACAACTTTAAGAGAACGTCTCAACTTGTCT
TAGATAGACGTTCCTTTGACGTCTCGTTTTTCGCGCTTCCccgaaaaaat
cttaaaaggcCTCATCCTAAAGAATATATCCCGAAAGGGCCATAGGTGAA
ACTCTTAGATATGAAATGAAGCAAATCATTTACCATCTGAGCCGCGTGAC
CGTTTTGGCTTAAAACGCTGAATCGGAAGTTAGATATATTGCCACATTAA
AAATATACCGCGTGTGTAAACAAACTTTCAATCCGCCATTCTAATTGTGG
CGAGAATCTTAAGGCTTCGTTTCTTGCTTCGGAAAGGTTAAAGATCTCAC
ACTCTAGCTCTTCGAAGAAGCATAAAAGGCAAATCATCCATCCGAAATCC
AAAAATGTATTTTACATTTCTTCATTAACAGGCTCTGGCAATTGTTGGAG
ATATCACAGTTCAAAGTGACATTGAGAACATTATCAACACAACCATGGAT
ACTTTCAAACGTCTCGATGTCTTGGTAAGTTATTATTATCAACATCAAGT
TAGATATTGACGAAGTCAAATCCTTTGGTATTAGATGCTATGCCAGAATG
tcatgaaaattttaacatacAAGAACTTTAACTCAATAAGGTACGTTCAT
ATGACTAAAATTAGTACTGCGACGCATTGAgtaatttaactttttttatt
acGCAGGTAAACAATGCTGGAGGTTTAGTTATGGGAACATGTCTTCAAAC
ATCAACGGAAGATTTTGATCAAATGATGAACATCAATGTCAGGTAAACGA
CTTCCAGCTggttcaacgtttatctaacgttcacaacgtccatataacgt
tagattaacgtttaaacaacgttgtgtgccagctgggcttgTGTTCTTTC
ATTTCGTTCCTTCTACACTGGTATGTAAATTAACGAGTTCATGTATGTCT
GTTCTTCTGCTACGGAGATGgatagttttttcatttttctgtccTGACTG
ACTAGGGATGAAggtaaatcagcatttttcGGGTCAAAACTGAGTAGttc
caaatcgtttcagtcactttaccgtcctcagggtacataaatttacaatt
tcacTGCAGCAAGGGTGTCGTAAGAGACGAATGTACACATCTCCAAATAA
GGACGATAAACGCCCTATTTACAATTTATATTCATCAAGCTAGTGTTTGA
TTTTTTGGCACAAGATATTGTCTCTTTGTCAGCTAAACAGGTCGCTTCTT
GCAACAAGATGAAGAGGTACTTAAAGTGTACCTACTTCAAACACTTGATT
GTCTGTATTTGTTAATATTACGCTAATTCAAATGTCACGTTTTGATGGGC
TAATGTTTACATAATGGGTCTATTTTTAGATGCTACACGTGAAGAACTAT
TTCTAATGCGAATCATGTACTTANGATGGGTCTATTGTTAGATGCTACAC
GTGAAGAACTATTTCTAATGCGAATCACGTACTTAAAGAGAAAttactac
cttattacacgaatattactagtcattttattaacacgaattgaattAAT
TGTGTTTTAATAAAAATCCCCTTAAATAAAACCAGGCGCTGTTTCCTTGA
GAAAGCAGAAAAATTCGTTAATTTCAGATTGTGagaatttcaaggccgtt
aaatacttgcctagtaatattcgtgtaatgaGGTATATACACAAGCTCTC
TGACTGGTCGGACCCTAATTATGTTATAGTTTTTATGTAAATTCTTGTTT
CCAGATCTGTTTTTCTTATCACCAAGATGGCTATCCCGCATTTGAAGAAA
ACTCAAGGTAAAAGTCAGCTCATtcatttttgctgaatcctAAAACTGAA
TTTCAGCAAACTTTCCCTACTACAAGAAAGCCTTCGCCATTCCAATATCT
TTATCTCTAGCTAAAATGGTTTTCCCTACAAATAAACTAAAACTTGATGG
TACCCTGAAGATAATATCAGAGTATATTGTAAaagtgaaattattttttg
gggAATAAAAACCTTTGTGGAAAAAAGATTATTGTGGTGAACAAAAGCAG
CAATTTGAGAAActaatttgggaaaaaaatggccaaaaattcttttcata
tcGGAACACGGCGATCTGGATTTATCGGATTAAAAAATGCCTATTTTTGG
tcgtaaagaaaaaatgacgaTATTTAACACAACGAATATCCAGTGAAAAC
TTGAGATCTTTAGCCCTTCCCGATCGGGAATTAATTCgattccgattttg
agggatcttgatctaaaattaaacttttcaaaaatttcccgattttgaat
agtttttatcaaaaaatttgttaAATCGGGCCGTTTTAAAAACAGTACTG
CActaattacaaaaataaacttttggtttccccgatttttaaacattact
ctAAAGATCACCGCGGAAAAATACCAGTATGTTATGATCTTGACATTCGA
GATTGGAATTTTGAGATTGGAATTTTGAGCAATAAACACTAAATTTCTAC
TCATTAAGACGTGTATTTTCTATCCCTATGGCCATTAAGCTCGTTCAAAA
TATTCTATTGTACTGGCTAAATGGGTCAATGTAACAATGGTCTGTACTGG
GATAATTTAGAATGCGCCAAAAGATGTCGCGTTTATTAAAACCGTGTATT
GTTTAATCTTTTAGGCAACATTGTCAATGTTTCGACCCTTGGTAGCTCGA
GAccagtaagtttttttttctcgatctcTTCAGAACTTTCAGTTGCCTCT
TTCCTTTTCATGAGACCATATTCGATTCAATAAGCATGAATAGAGTATAA
TATGAGGGGTGGTCAGAGcaagtttcttaaaaaattgagCTAAAATGCTA
AGCAACTTCAACCCTAAgccgaaaattttcttttgttgcaGCAAATTGGA
GTAAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGCGAGC
TACTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAACC
CGAGCATTATTGCTACGGAAAATACCTCAAGTAGCAACCATCCCACAATC
TCAGTATGTAGTAGttttttaatttctaaaatatttctgtaACTTGAAAA
TCATTGTACAGCAGGCCCTTTCATCTAGTGCCTGTTTAATCCATTTAAAA
TACAGGAAAGATTTTAGCTATAATAACTGCCCTTTGAATTccactggcgg
atttaagacaatagagcaagtacgccAAAAAACATACTAAGGAGTGCAAC
GGTCGTTAATTGACAattaaattacaattacaaatctcttaaCCCAGTGC
ACCTTGAAAAGTGTACACTTTACAGTGTGTCTCGAAAAAGATACTGTATC
AGACCACTTATATTAAGTAGAAATAGTACTCTTTTCAATTGTTTATACGA
TATGATCTTTAATGTGTTGTTTGACAAAAGACATGTCTTTTAGttggcct
taattattagtcggccctaatttttgTCACCaaaccaaaatttagtcact
tagggccgactaaaataataattaaattttggcaatttctaaatttttag
tcgccccaaatttttagtcggccctaattttagtcacctcgtcaaaattt
attcACTAAGGGCCAACTAATAATTAGattttggccatttctaaaCTTTT
AGTGGACCCAAATTTTAGtgggcccaaatttttagtcagccttaatttta
gtcaccaagccaaaatttagtcacttagggccgactaagttttggccgat
aaggtaaattACAGAATCAACGAATATCGTGTATTTTTCACCAATGTTCC
AACTGTAATAGTACTGTACAAACAAAATCGATGGTAATTTCCCTTCTGTA
TTTAGAAATGATAGGTAAACTTTTTCATATAcgataaatattttcaactc
ACAGTTCTTTTCTCGCTGTATGTGTCATATGTCCATGGTCAACTATAATA
AACCATTGCTTGAAATCATTGCGGTTAATTTCTCATAGAGTGCAATGGAA
AGAAGCAAAGACGTGCACGCCCTGGGACGTGCTGGTACAGTTGACGAGGT
AGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTG
GAGCATGCATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAG
ATCTTCAACAATACGATATTTACAGTCTGTAACatggattaaaaaaaaat
tctaccaaCAAAATCGAAGTACTTTGATTTCTTTGAACAGTGTGATTTTT
AATGTTAGCTTactattttgtgaattttttgtGGTTTTGGGTGAAGCACT
CTTTTGtatattgtcaattttttcacttttctataaaagcaaatatcttt
ggaaataatttttttactatGGTTGAATAAGAAATAAAAACGAAATACAA
AAAATTTACATGGTCGTATTAATTGATGCATCGAGAAGGAACTGAGAAGt
gaataatttcaatttgaagataattattttttggggaattaaAGGGGAAG
GCTCCGCTTACGCTTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024002	XLOC_024002	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002170	supercontig	sc0002170:7122..13389 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.7652	70.1621	69.9272	77.4271	11.9647	2.34997	43.7892	41.7742	102.224	71.5256	59.9415	74.758	5.49519	5.34785	1.95256	4.12799	2.2976	1.98469	2.93255	1.63395	2.68771e-05	0.655429	45.9178	45.0982	0.244953	0	1.49648	3.0455	17.8324	19.1703

Blast

[Close]

BLAST of TCONS_00039699 vs. Swiss-Prot (Human)
Match: DHRS4 (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 3.330e-16
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3

Query:  441 LITKMAIPHL-KKTQGNIVNVSTLGSSRPQIGVNAYCTSKAALDQFTRATAIELGADQVRVNCVNPSIIATENTSSSNHPTISSAMERS-KDVHALGRAGTVDEVASVICFLASGAASYMTGACIPIDGG 824
            L+TK  +P + K+  G++V VS++ +  P  G + Y  SK AL   T+  AIEL    +RVNC+ P +I    TS S    +    E S K+   + R G  ++ A ++ FL S  ASY+TG  + + GG
Sbjct:  147 LMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLI---KTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGG 273

HSP 2 Score: 30.4166 bits (67), Expect = 3.330e-16
Identity = 25/85 (29.41%), Postives = 40/85 (47.06%), Query Frame = 2

Query:  185 KVVLVTGAGSGIGQGTAYMFAKSGAKMVVTDRNEGKLKETAN--KCEELSKQKALAIVGDITVQSDIENIINTTMDTFKRLDVLI 433
            KV LVT +  GIG   A   A+ GA +VV+ R +  + +     + E LS    +  VG      D E ++ T +     +D+L+
Sbjct:   33 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGK---AEDRERLVATAVKLHGGIDILV 114

The following BLAST results are available for this feature:

BLAST of TCONS_00039699 vs. Swiss-Prot (Human)

BLAST of TCONS_00039699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DHRS4	3.330e-16	35.38	Dehydrogenase/reductase SDR family member 4 OS=Hom...	[more]

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TCONS_00039699 (transcript) - C. hemisphaerica