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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039679 ID=TCONS_00039679|Name=TCONS_00039679|organism=Clytia hemisphaerica|type=transcript|length=854bp
ACAACGTACTCCCGGTAAAGACGATTTACATGTTATTAACTACTCGTCTC
GTGCTTTAAAAGACGTCGAATGTCGCTACAGCCAAATCGAACGCGAATGC
CTTGGTATGGTTTACGCTGCTGAGAAGAACCATATCTACCTTTTCGGTCG
AAATTTTACGTTATTTAATGACCACAAAGCGTTAATTAACATTTTGAACA
ATAAGAAACGCAACATACCGCTTCGAATCGAAAGAATGCTTTTACGTTTA
CAAGATTATGACCTCGAAGCCAAACACGTTTCTTCAGACGATAACATTTC
GGATTACACAAGTCGGCATCCGGTTAATCAACCAAATACAACGAACAGTT
ACATTGAGACTTACGTTAACATGGTTACAAATTTTGCAACACCAAAAGCC
TTCAAGATTGAGGACATTGCTACAGGAACAGAAAACGAAATCGAATTACA
AATCCTCAAGGAGATGATACAAGCCAACGATTGGTACAAATTAGATGAGC
CACAGAAACATGAACATTTACGTAAGGTTAATATAGACTTGCTTAAACAG
TTTCGTAAAGTCAAAGACGAACTGACCGTCAATCTCAAACATGGTGTCAT
CCTCAAAGGTAACCGAATCGTTCTACCTACGAAATTCTACGAAGATGCTG
TACGCATTTGTCACGTTGGACATCAAGGCATCGAAAAGACGAAACAACTT
TTACGAACGAAAGTATTCTTTTTCGGCATGGATAAGATGNTGTAACCGAA
TCGTTCTACCTATGAAATTCTACGAAGATGCTGTACGCATTTGTCACGTT
GGACATCAAGGCATCGAAAAGACGAAACAACTTTTACGAACGAAAGTATT
CTTT Run BLAST on NCBI protein sequence of TCONS_00039679-protein >TCONS_00039679-protein ID=TCONS_00039679-protein|Name=TCONS_00039679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
QRTPGKDDLHVINYSSRALKDVECRYSQIERECLGMVYAAEKNHIYLFGR
NFTLFNDHKALINILNNKKRNIPLRIERMLLRLQDYDLEAKHVSSDDNIS
DYTSRHPVNQPNTTNSYIETYVNMVTNFATPKAFKIEDIATGTENEIELQ
ILKEMIQANDWYKLDEPQKHEHLRKVNIDLLKQFRKVKDELTVNLKHGVI
LKGNRIVLPTKFYEDAVRICHVGHQGIEKTKQLLRTKVFFFGMDKMX Run BLAST on NCBI transcript from alignment at sc0002160:17464..18317 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039679 ID=TCONS_00039679|Name=TCONS_00039679|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0002160:17464..18317 (Clytia hemisphaerica)
AAAGAATACTTTCGTTCGTAAAAGTTGTTTCGTCTTTTCGATGCCTTGAT
GTCCAACGTGACAAATGCGTACAGCATCTTCGTAGAATTTCATAGGTAGA
ACGATTCGGTTACANCATCTTATCCATGCCGAAAAAGAATACTTTCGTTC
GTAAAAGTTGTTTCGTCTTTTCGATGCCTTGATGTCCAACGTGACAAATG
CGTACAGCATCTTCGTAGAATTTCGTAGGTAGAACGATTCGGTTACCTTT
GAGGATGACACCATGTTTGAGATTGACGGTCAGTTCGTCTTTGACTTTAC
GAAACTGTTTAAGCAAGTCTATATTAACCTTACGTAAATGTTCATGTTTC
TGTGGCTCATCTAATTTGTACCAATCGTTGGCTTGTATCATCTCCTTGAG
GATTTGTAATTCGATTTCGTTTTCTGTTCCTGTAGCAATGTCCTCAATCT
TGAAGGCTTTTGGTGTTGCAAAATTTGTAACCATGTTAACGTAAGTCTCA
ATGTAACTGTTCGTTGTATTTGGTTGATTAACCGGATGCCGACTTGTGTA
ATCCGAAATGTTATCGTCTGAAGAAACGTGTTTGGCTTCGAGGTCATAAT
CTTGTAAACGTAAAAGCATTCTTTCGATTCGAAGCGGTATGTTGCGTTTC
TTATTGTTCAAAATGTTAATTAACGCTTTGTGGTCATTAAATAACGTAAA
ATTTCGACCGAAAAGGTAGATATGGTTCTTCTCAGCAGCGTAAACCATAC
CAAGGCATTCGCGTTCGATTTGGCTGTAGCGACATTCGACGTCTTTTAAA
GCACGAGACGAGTAGTTAATAACATGTAAATCGTCTTTACCGGGAGTACG
TTGT Coding sequence (CDS) from alignment at sc0002160:17464..18317 >TCONS_00039679 ID=TCONS_00039679|Name=TCONS_00039679|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0002160:17464..18317 (Clytia hemisphaerica)
TTACANCATCTTATCCATGCCGAAAAAGAATACTTTCGTTCGTAAAAGTT
GTTTCGTCTTTTCGATGCCTTGATGTCCAACGTGACAAATGCGTACAGCA
TCTTCGTAGAATTTCGTAGGTAGAACGATTCGGTTACCTTTGAGGATGAC
ACCATGTTTGAGATTGACGGTCAGTTCGTCTTTGACTTTACGAAACTGTT
TAAGCAAGTCTATATTAACCTTACGTAAATGTTCATGTTTCTGTGGCTCA
TCTAATTTGTACCAATCGTTGGCTTGTATCATCTCCTTGAGGATTTGTAA
TTCGATTTCGTTTTCTGTTCCTGTAGCAATGTCCTCAATCTTGAAGGCTT
TTGGTGTTGCAAAATTTGTAACCATGTTAACGTAAGTCTCAATGTAACTG
TTCGTTGTATTTGGTTGATTAACCGGATGCCGACTTGTGTAATCCGAAAT
GTTATCGTCTGAAGAAACGTGTTTGGCTTCGAGGTCATAATCTTGTAAAC
GTAAAAGCATTCTTTCGATTCGAAGCGGTATGTTGCGTTTCTTATTGTTC
AAAATGTTAATTAACGCTTTGTGGTCATTAAATAACGTAAAATTTCGACC
GAAAAGGTAGATATGGTTCTTCTCAGCAGCGTAAACCATACCAAGGCATT
CGCGTTCGATTTGGCTGTAGCGACATTCGACGTCTTTTAAAGCACGAGAC
GAGTAGTTAATAACATGTAAATCGTCTTTACCGGGAGTACGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039679-exon-sc0002160-1491911889:17464..18317 | TCONS_00039679-exon-sc0002160-1491911889:17464..18317 | Clytia hemisphaerica | exon |
| TCONS_00039679-exon-sc0002160-1510915933:17464..18317 | TCONS_00039679-exon-sc0002160-1510915933:17464..18317 | Clytia hemisphaerica | exon |
| TCONS_00039679-exon-sc0002160-1575043694:17464..18317 | TCONS_00039679-exon-sc0002160-1575043694:17464..18317 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002160 | supercontig | sc0002160:17464..18317 . |
Blast
The following BLAST results are available for this feature:
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