TCONS_00039674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039674
Unique NameTCONS_00039674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039674 ID=TCONS_00039674|Name=TCONS_00039674|organism=Clytia hemisphaerica|type=transcript|length=752bp
TCGCTACcggacattttttttaattatatatTTGTGGTCGAAGAAGATAA
GCTGCGTGAAAGTAGTCAATATTGTGCGAGTCAACAAGGACCATGTAATT
CAAATGTTTCAAAAGTTAAGAAGAGTGTGTCAAAATGATCTTCAAAGGAA
CCCCATCCGGGTTGGTGGTGGTGGCGCAAATTTTGTCGTTCAAATTGACA
AAAGCCAGTTTCATCACAGACGTAGGgctGGAGTAGGACGCGTTGCCCAA
AATCCGGTATGGGTTTTTGGCTTGGCCGATACGAGGTTTGTACCTGCCAA
AGGATATATGGAAATTGTCCCAAGGAGGAATCGCGCTGTTTTGACTGGGG
TGATCAATCGTGTCCTAAATGCCAACAGCATTATCCATAGCGACGAATGG
AGGGCATACATCAATCTCCCACAATTCGTTCCAAATTGTATTGGCCATGA
CACGGTTAACCATACGTACCACTTTGTAGATCCTCAAACACGGGCTCACA
CGCAGaATATAGAGTCATATTGGAACCGcttcaaattgaaaatcaagGCT
ATGAAAGGGATCAGGCGTGTTGATCTTCAAAGTTACATGGACGAGTTCAT
GTGGAGAGATTGGTACGGACTTGACCAGCCATTCGACAACATCATCGCTT
GTATTAATATCGACTACCCCCAAACATGATTTTGATGTTGCTCCAGCTAT
TTTGTTTATTCCCttgtatatatatatttttatagtACTTTTTCAACatg
tg
Run BLAST on NCBI

protein sequence of TCONS_00039674-protein

>TCONS_00039674-protein ID=TCONS_00039674-protein|Name=TCONS_00039674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
RYRTFFLIIYLWSKKISCVKVVNIVRVNKDHVIQMFQKLRRVCQNDLQRN
PIRVGGGGANFVVQIDKSQFHHRRRAGVGRVAQNPVWVFGLADTRFVPAK
GYMEIVPRRNRAVLTGVINRVLNANSIIHSDEWRAYINLPQFVPNCIGHD
TVNHTYHFVDPQTRAHTQNIESYWNRFKLKIKAMKGIRRVDLQSYMDEFM
WRDWYGLDQPFDNIIACINIDYPQT
Run BLAST on NCBI

transcript from alignment at sc0002159:10644..12665-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039674 ID=TCONS_00039674|Name=TCONS_00039674|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at sc0002159:10644..12665- (Clytia hemisphaerica)
TCGCTACCGGACATTTTTTTTAATTATATATTTGTGGTCGAAGAAGATAA
GCTGCGTGAAAGTAGTCAATATTGTGCGAGTCAACAAGGACCATGTAATT
CAAATGTTTCAAAAGTTAAGAAGAGTGTGTCAAAATGATCTTCAAAGGAA
CCCCATCCGGGTTGGTGGTGGTGGCGCAAATTTTGTCGTTCAAATTGACA
AAAGCCAGTTTCATCACAGACGTAGGGTATAATTTGATCAATTGATTTTG
AGCTGTAAGGTACCGGGTGTTAAAAAAACGGAACAAGTTTGAAAAGTTGT
GAAAAAATTACAAATGCTATCGACTTAATTTGTTAGGCTAACTTAAATTT
TGAGGTTTTGAATTTGCTTTATTCGTTCAAAAGTTATGAAGAAAAACGAC
AAATTTTCTTTTAAAAAAACATCAAAAAGTTTTTCCGTCTTTTTTAAACA
CCCGTATAGTTCATAAAATTTAAAAATTTTAAGGATATCATAAGATTTGG
ATATCCATCGATTTTATATCAGAACAAAGTGTAANAGTTTTTCCGTTTTT
TTTAAACACCCGTGTAGTTCATAAAATTTTAAAATTTTAAGGATATCAGA
AGATTTAGATATCCAACGATTTTATATCAGAACAAAGTGTAGAACATTCA
TAGCCAAAAAACGTTGTTTGGAATTTTATTATTCTCGATGATTTGAAAAT
TTGAGAAGATTTCTAAAAGTCTCGAAAAGTCAAGAACAGCGCCGAGTCTC
GACCAAATTTTATCCGTTCTTATAAAATAGTGTGCGCCTTGAGAGTCTTT
AAACATGCATAAACAAGTATTTTTTTCATTTTTAGGCTGGAGTAGGACGC
GTTGCCCAAAATCCGGTATGGGTTTTTGGCTTGGCCGATACGAGGTTTGT
ACCTGCCAAAGGATATATGGAAATTGTCCCAAGGAGGAATCGCGCTGTTT
TGACTGGGGTGATCAATCGTGTCCTAAATGCCAACAGCATTATCCATAGC
GACGAATGGAGGGCATACATCAATCTCCCACAATTCGTTCCAAATTGTAT
TGGCCATGACACGGTTAACCATACGTACCACTTTGTAGATCCTCAAACAC
GGGCTCACACGCAGGTAAGCGATAATTACTACTCTTTAGAATTTGAGATA
TGTCTTCAAATTTCTCATATCTTTCTGAACGGATCAAAAGTTACAGACCA
ACAAAGTAGAGTTAAAATAGCAAAAATGGGCGAAACGGGCCAGCTTTTTG
GAGCTATAACTTTACATAAATCAGACAATCAAAGCATTAAAAAAATATGT
CAAGTTAAGATTATTTCGTTAGAAACCTATTTCTTATNACCAACAAGCTA
GAGTTAAAATGGCAAAGATGGGCGAAACGGGCCAGCTTTTTGGAGCTATA
ACTTTACATAAATCAAGTTAAGATTATTTCGTTAGAAACCTATTTCTTAT
ATTTTTAGAATATAGAGTCATATTGGAACCGCTTCAAATTGAAAATCAAG
GCTATGAAAGGGATCAGGCGTGTTGATCTTCAAAGTTACATGGACGAGTT
CATGTGGAGGTAACTAAAAATTTAATAGTTTTTAGAAATTATGTTTAAAG
GTTTTGTTTTGTTATGTAAAGTTTTCGTTTACTAACTAAACTTTTTTAAA
TTACAAGCTATTTTGTATTGAATAGACACAGATGTTTAGCAAAAACCAAG
AAAATTCAAAATATTTGTTTATCTCAGCGAAAAAAGACAATATGCCGACT
CTGGTCTAATATGAAATATATGCCCAATCTGAGACAGAGTTACTTAAGCT
AATACAAAGCCTTTATTTTATCCAAAAATAATTTAAATAAACTCTGTTAA
CTATTGACTGTCTTGTTTTATTACAGAGATTGGTACGGACTTGACCAGCC
ATTCGACAACATCATCGCTTGTATTAATATCGACTACCCCCAAACATGAT
TTTGATGTTGCTCCAGCTATTTTGTTTATTCCCTTGTATATATATATTTT
TATAGTACTTTTTCAACATGTG

Coding sequence (CDS) from alignment at sc0002159:10644..12665-

>TCONS_00039674 ID=TCONS_00039674|Name=TCONS_00039674|organism=Clytia hemisphaerica|type=CDS|length=2712bp|location=Sequence derived from alignment at sc0002159:10644..12665- (Clytia hemisphaerica)
AGATTGGTACGGACTTGACCAGCCATTCGACAACATCATCGCTTGTATTA
ATATCGACTACCCCCAAACATGAAATATAGAGTCATATTGGAACCGCTTC
AAATTGAAAATCAAGGCTATGAAAGGGATCAGGCGTGTTGATCTTCAAAG
TTACATGGACGAGTTCATGTGGAGGCTGGAGTAGGACGCGTTGCCCAAAA
TCCGGTATGGGTTTTTGGCTTGGCCGATACGAGGTTTGTACCTGCCAAAG
GATATATGGAAATTGTCCCAAGGAGGAATCGCGCTGTTTTGACTGGGGTG
ATCAATCGTGTCCTAAATGCCAACAGCATTATCCATAGCGACGAATGGAG
GGCATACATCAATCTCCCACAATTCGTTCCAAATTGTATTGGCCATGACA
CGGTTAACCATACGTACCACTTTGTAGATCCTCAAACACGGGCTCACACG
CAGCGCTACCGGACATTTTTTTTAATTATATATTTGTGGTCGAAGAAGAT
AAGCTGCGTGAAAGTAGTCAATATTGTGCGAGTCAACAAGGACCATGTAA
TTCAAATGTTTCAAAAGTTAAGAAGAGTGTGTCAAAATGATCTTCAAAGG
AACCCCATCCGGGTTGGTGGTGGTGGCGCAAATTTTGTCGTTCAAATTGA
CAAAAGCCAGTTTCATCACAGACGTAGGAGATTGGTACGGACTTGACCAG
CCATTCGACAACATCATCGCTTGTATTAATATCGACTACCCCCAAACATG
AAATATAGAGTCATATTGGAACCGCTTCAAATTGAAAATCAAGGCTATGA
AAGGGATCAGGCGTGTTGATCTTCAAAGTTACATGGACGAGTTCATGTGG
AGGCTGGAGTAGGACGCGTTGCCCAAAATCCGGTATGGGTTTTTGGCTTG
GCCGATACGAGGTTTGTACCTGCCAAAGGATATATGGAAATTGTCCCAAG
GAGGAATCGCGCTGTTTTGACTGGGGTGATCAATCGTGTCCTAAATGCCA
ACAGCATTATCCATAGCGACGAATGGAGGGCATACATCAATCTCCCACAA
TTCGTTCCAAATTGTATTGGCCATGACACGGTTAACCATACGTACCACTT
TGTAGATCCTCAAACACGGGCTCACACGCAGCGCTACCGGACATTTTTTT
TAATTATATATTTGTGGTCGAAGAAGATAAGCTGCGTGAAAGTAGTCAAT
ATTGTGCGAGTCAACAAGGACCATGTAATTCAAATGTTTCAAAAGTTAAG
AAGAGTGTGTCAAAATGATCTTCAAAGGAACCCCATCCGGGTTGGTGGTG
GTGGCGCAAATTTTGTCGTTCAAATTGACAAAAGCCAGTTTCATCACAGA
CGTAGGAGATTGGTACGGACTTGACCAGCCATTCGACAACATCATCGCTT
GTATTAATATCGACTACCCCCAAACATGAAATATAGAGTCATATTGGAAC
CGCTTCAAATTGAAAATCAAGGCTATGAAAGGGATCAGGCGTGTTGATCT
TCAAAGTTACATGGACGAGTTCATGTGGAGGCTGGAGTAGGACGCGTTGC
CCAAAATCCGGTATGGGTTTTTGGCTTGGCCGATACGAGGTTTGTACCTG
CCAAAGGATATATGGAAATTGTCCCAAGGAGGAATCGCGCTGTTTTGACT
GGGGTGATCAATCGTGTCCTAAATGCCAACAGCATTATCCATAGCGACGA
ATGGAGGGCATACATCAATCTCCCACAATTCGTTCCAAATTGTATTGGCC
ATGACACGGTTAACCATACGTACCACTTTGTAGATCCTCAAACACGGGCT
CACACGCAGCGCTACCGGACATTTTTTTTAATTATATATTTGTGGTCGAA
GAAGATAAGCTGCGTGAAAGTAGTCAATATTGTGCGAGTCAACAAGGACC
ATGTAATTCAAATGTTTCAAAAGTTAAGAAGAGTGTGTCAAAATGATCTT
CAAAGGAACCCCATCCGGGTTGGTGGTGGTGGCGCAAATTTTGTCGTTCA
AATTGACAAAAGCCAGTTTCATCACAGACGTAGGAGATTGGTACGGACTT
GACCAGCCATTCGACAACATCATCGCTTGTATTAATATCGACTACCCCCA
AACATGAAATATAGAGTCATATTGGAACCGCTTCAAATTGAAAATCAAGG
CTATGAAAGGGATCAGGCGTGTTGATCTTCAAAGTTACATGGACGAGTTC
ATGTGGAGGCTGGAGTAGGACGCGTTGCCCAAAATCCGGTATGGGTTTTT
GGCTTGGCCGATACGAGGTTTGTACCTGCCAAAGGATATATGGAAATTGT
CCCAAGGAGGAATCGCGCTGTTTTGACTGGGGTGATCAATCGTGTCCTAA
ATGCCAACAGCATTATCCATAGCGACGAATGGAGGGCATACATCAATCTC
CCACAATTCGTTCCAAATTGTATTGGCCATGACACGGTTAACCATACGTA
CCACTTTGTAGATCCTCAAACACGGGCTCACACGCAGCGCTACCGGACAT
TTTTTTTAATTATATATTTGTGGTCGAAGAAGATAAGCTGCGTGAAAGTA
GTCAATATTGTGCGAGTCAACAAGGACCATGTAATTCAAATGTTTCAAAA
GTTAAGAAGAGTGTGTCAAAATGATCTTCAAAGGAACCCCATCCGGGTTG
GTGGTGGTGGCGCAAATTTTGTCGTTCAAATTGACAAAAGCCAGTTTCAT
CACAGACGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023980XLOC_023980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039674-exon-sc0002159-1575043694:12440..12665TCONS_00039674-exon-sc0002159-1575043694:12440..12665Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1575043694:11552..11830TCONS_00039674-exon-sc0002159-1575043694:11552..11830Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1575043694:11107..11207TCONS_00039674-exon-sc0002159-1575043694:11107..11207Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1575043694:10644..10789TCONS_00039674-exon-sc0002159-1575043694:10644..10789Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1510915933:12440..12665TCONS_00039674-exon-sc0002159-1510915933:12440..12665Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1510915933:11552..11830TCONS_00039674-exon-sc0002159-1510915933:11552..11830Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1510915933:11107..11207TCONS_00039674-exon-sc0002159-1510915933:11107..11207Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1510915933:10644..10789TCONS_00039674-exon-sc0002159-1510915933:10644..10789Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1491911889:12440..12665TCONS_00039674-exon-sc0002159-1491911889:12440..12665Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1491911889:11552..11830TCONS_00039674-exon-sc0002159-1491911889:11552..11830Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1491911889:11107..11207TCONS_00039674-exon-sc0002159-1491911889:11107..11207Clytia hemisphaericaexon
TCONS_00039674-exon-sc0002159-1491911889:10644..10789TCONS_00039674-exon-sc0002159-1491911889:10644..10789Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039674-proteinTCONS_00039674-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002159supercontigsc0002159:10644..12665 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.15276	2.02844	0	1.5007	0.229809	1.08076	0.614647	0	0.778176	0	0	0.268461	0	0	0	0	0	0	0.149827	0	1.1669	1.40987	0.56547	0.776412	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024445Tnp_ISXO2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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