TCONS_00039671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039671
Unique NameTCONS_00039671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039671 ID=TCONS_00039671|Name=TCONS_00039671|organism=Clytia hemisphaerica|type=transcript|length=1740bp
tagatcttcaaaaaatatggaaatagaTAGTTTGCcaataaatttcaaaa
ccaaGTTTGATGAAGGTGGTACATCAACCATCCacaaaataactttaaaa
cgaaAAGCAACAGCTGTTAAGCTGTTCAAAAACCaagttattaaaagaaa
aatatcgcAAATTGCGAAAAAATTAAGGCAGTTGGAACACCCAAATTTGG
TAAGATTCATTGGATTTTCTTCCAAACCTTCTGCACTGGTGTTTGAGTTT
TGTCAGGTATCTATTGATGGAAACGAGTTCAACAATTTGGCACAACTCGT
CAACtacaaaaatgaaattcaagCATTTTGTCTCAATGAAAGACTTGACT
TTATGAGACAAATCTCAGAGGGAATCTCCTATCTGCACAACAAACAGATC
ATTCATCGTGACATcaaaccaaacaattttttagtCCAACAAAGTGATAC
TGGAGTTGTGGTCAAAGTGTCTGATTTTGACGATGTAGTTGTCTTAAAGA
CTGCTATAACCTGCAGTACCACCAACTGGCAAGCTGGAATGACGCTTGCA
TACACTGCTCCAGAAATATGCTCTGGAGCATCTGCCCACACGTCTTTCGA
GACTGACATATACTCATTGGCCGTGTGTTGTTTTCAAATCTTGTTTAACA
AGCCATTTATATGGGAAGGTGTGTTACCCTTCATGAACGACTCACTACTG
ATCAACGCTCTAGCAGAAAACAAACGACCCGATTTTGGCATGATTGAACA
GCTATACGTAGCAGACATGAAGAAAATTAAGGAGTTGATTGTAGGATGTT
GGTCAACTGACCCCTCGGTTAGACCCAAGATTtcagagGTAGTTGATGCA
TTGGGAAGTATTTTTGGAACAGGATCTCGTGTTAAAAAGGTGTTGCCCAA
AAGAATCAAAGTTGACAATAACGCGGTTGCTTTGGAATGGTTGGCATTAA
AGAAAGATCCCGAGtacattgaaaaactttttatacATGATTTAATTGGT
TATGGTGTCTTTGCTAAGCGACTGATTACAAAAGGTGAATTCATTGCATC
TTACGAAGGAGAAAGGATAACTTGCAAAGAAGGTGAAAATAGATTGAGCA
AGCAAGACGACAACGACAAAAGCTACTTGTACTTTGTATCTCATCGAAAA
ACTAACTTTTGTATTGATGCGTCAAAAATAGATAGACTTGGCCGGTACAT
AAACGACTCGAAGACACCCAATTGTGCAGTGAAGATAGTTGAAAATAGTC
AAAACATCCCATGTGTATCAATTTTCGCCATAAAAGATATACAAGAAGGA
ATGGAAGTTCGTTATAATTATAATGATCGAAATCTCTTCTGGAGAAAGCA
GGTATTTGAAATAGATTAACTTGATTTTAGTCTGTCTCTAGGTGATCTCT
ACAATCATTGACATTTATATGAGGCGAAGAAATTcccaacaaaattttaa
aaccaaaaatgattttaaagtgCTGTAACTTTGGGTGAGTTTTaactgag
ttttaacattagaattaagacttaggagcttaggataTCCGGATCTAAAA
ACTCGAAAATGGTCCAATAATTGGGTAATTTGGGAAGAATGGTGGGAACT
TTTTTTTCCCCACAGAAATAACACCAAACCTTATCCCATCTCCTCAAGTT
TTGCATGTATAAAAACACTTTGCCTTTGCAGTGGTTGCTTttactttttc
gttttttagccTGCAGGTCCACATCAGTCTTTACTGCCAA
Run BLAST on NCBI

protein sequence of TCONS_00039671-protein

>TCONS_00039671-protein ID=TCONS_00039671-protein|Name=TCONS_00039671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
RSSKNMEIDSLPINFKTKFDEGGTSTIHKITLKRKATAVKLFKNQVIKRK
ISQIAKKLRQLEHPNLVRFIGFSSKPSALVFEFCQVSIDGNEFNNLAQLV
NYKNEIQAFCLNERLDFMRQISEGISYLHNKQIIHRDIKPNNFLVQQSDT
GVVVKVSDFDDVVVLKTAITCSTTNWQAGMTLAYTAPEICSGASAHTSFE
TDIYSLAVCCFQILFNKPFIWEGVLPFMNDSLLINALAENKRPDFGMIEQ
LYVADMKKIKELIVGCWSTDPSVRPKISEVVDALGSIFGTGSRVKKVLPK
RIKVDNNAVALEWLALKKDPEYIEKLFIHDLIGYGVFAKRLITKGEFIAS
YEGERITCKEGENRLSKQDDNDKSYLYFVSHRKTNFCIDASKIDRLGRYI
NDSKTPNCAVKIVENSQNIPCVSIFAIKDIQEGMEVRYNYNDRNLFWRKQ
VFEID
Run BLAST on NCBI

transcript from alignment at sc0002158:11924..16364-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039671 ID=TCONS_00039671|Name=TCONS_00039671|organism=Clytia hemisphaerica|type=transcript|length=4441bp|location=Sequence derived from alignment at sc0002158:11924..16364- (Clytia hemisphaerica)
TAGATCTTCAAAAAATATGGAAATAGATAGTTTGCCAATAAATTTCAAAA
CCAAGTTTGATGAAGGTGGTACATCAACCATCCACAAAATAACTTTAAAA
CGAAAAGCAACAGCTGTTAAGCTGTTCAAAAACCAAGTTATTAAAAGAAA
AATATCGCAAATTGCGAAAAAATTAAGGCAGTTGGAACACCCAAATTTGG
TAAGATTCATTGGATTTTCTTCCAAACCTTCTGCACTGGTGTTTGAGTTT
TGTCAGGTATCTATTGATGGAAACGAGTTCAACAATTTGGCACAACTCGT
CAACTACAAAAATGAAATTCAAGCATTTTGTCTCAATGAAAGACTTGACT
TTATGAGACAAATCTCAGAGGGAATCTCCTATCTGCACAACAAACAGATC
ATTCATCGTGACATCAAACCAAACAATTTTTTAGTCCAACAAAGTGATAC
TGGAGTTGTGGTCAAAGTGTCTGATTTTGACGATGTAGTTGTCTTAAAGA
CTGCTATAACCTGCAGTACCACCAACTGGCAAGCTGGAATGACGCTTGCA
TACACTGCTCCAGAAATATGCTCTGGAGCATCTGCCCACACGTCTTTCGA
GACTGACATATACTCATTGGCCGTGTGTTGTTTTCAAATCTTGTTTAACA
AGCCATTTATATGGGAAGGTGTGTTACCCTTCATGAACGACTCACTACTG
ATCAACGCTCTAGCAGAAAACAAACGACCCGATTTTGGCATGATTGAACA
GCTATACGTAGCAGACATGAAGAAAATTAAGGAGTTGATTGTAGGATGTT
GGTCAACTGACCCCTCGGTTAGACCCAAGATTTCAGAGGTTTGTTTTTTT
TAATTGGTTTGATTCCATCCACAACATAGTGTCCTAATAGATGGTCCCTC
CCCTTGAAAACTGAAAAAATCTCTTTGCCCCCCCCCCCTCTTTTAGTCTC
AGGTTTATAAAAAAAAGCATTATTTTTGCATTTTTGCTTTGGGATTTTTA
TTCTCGTCATATCTAAAATAAAAGATAAAATCCTAAATTCTCCTAAATTT
TGAAAAGTCTCCTAAAATCTCCTAAATAATATTTCAAAAATTCAATTTAC
TCTGATTATTCAATTTTCAAAAAGTAATAAATGAAGCACTGGTAGTATGA
TGTTGAGATACATACATTGCCTTGATCGGTTGTACATCATTTAATGCTAT
TACAAAATATATCTTTGGAAGTTATGAAAAAAATATATCTTTGAAAGTTA
TGAAAATTTTGTAGAATTTTCTCTTCAAAAATCCTGAAATTCATTGAAAA
AGTGTGAAAATCTCCTCAAAACTCCTAAATTTTTTAACCAAAAAATTCAG
TTTCTCCAAAAAAAAATAGTTGAAAATTACCTAAAATCTACTAGATTCTC
CTAAATTTTCATCGAAACAAAATCGTGGTAACCCTGTAATAATATCAATA
CACTAAAGCTCTTAACAAAGTCTTGTAATAGTCTTAGAGTCTTAAAGTCT
TAGGGGAAGAAATTTTGCAGCATTTAATCTCGCAAAATTGGGTCTGATTA
TCGAAATTGAATGCTGCAAAATTTCTTCCCTGAAGGAAACTGTGTTTTAA
CCTTTTTTCTGTTTTGAACTCACATTTTTTATTACGGATGGTCAGACTAT
GTTATAAAAATAACAGAAAACTGGACTTTTTTTCTGATTTTTTCTCCCCC
TTTTGATTTCCCCCTAGAATCTTGATAATTATTTTCCCCACCCCTTGGCC
AATTTGGGGAAAAAATCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAATTAGGTCCCCCCCGTTTA
TTAAAATCTAGAAAATTTTCCAACCCCCCCGTTTATTCGAACCCCCCCCC
GTTTATTTGGAACCTAAGAGTATATGTTGCAAAAAAGAAAAATACAAAGA
AAGAGGTTGGTTGGGATAAACAAACTGGGCTCTATCTTTTATTTTAGGTA
GTTGATGCATTGGGAAGTATTTTTGGAACAGGATCTCGTGTTAAAAAGGT
AACTTTGTTCGAAGAGCCAACTCATGTACGTATTTGTATTTGTTTTTAAA
GACCATGAGAAAATAGTCACAGAGTGCTCAAGAAAAATATCGAACAAGTA
TAGAACTAATCTTATAATGCTACATGATGTTTCATGCTATGCAATTGTCA
GGCAATGTGAAAAATTTCAAGATTTCTGTTTGTTAAAGATTGTTGAGAAT
AAAAATAAACTAGCTGGGTATGCTATAAAAGTACTTGGATATATTTCTTT
ACATATTTCAATAAAAATTTCATCAATTAGGTGTTGCCCAAAAGAATCAA
AGTTGACAATAACGCGGTTGCTTTGGAATGGTTGGCATTAAAGAAAGATC
CCGAGTACATTGAAAAACTTTTTATACATGATTTAATTGGTATGTTTTGT
TTAAAAGTGACGTACCAAAGTTTGAGTTTGAAATGTTATGTAACTTTTCA
ATATTGGTTAAAGAGACTCTCGGTTGTAAAAATAAATAAAGGGAAAAGCT
TGATGATGTGAAACATAAGTAACAAGTAATGAGGAGACTGTTAAAAAGTT
ATAGGACTTTGCTAGAATGGATTCAGACCTTTCTTGAGATGTTTTTGTAG
AATAGCTGTCATTTAATGAAATTATATTTTTCCTTTTCAACTTCTTGTTT
ACCTTTTTTTAGGTTATGGTGTCTTTGCTAAGCGACTGATTACAAAAGGT
GAATTCATTGCATCTTACGAAGGAGAAAGGATAACTTGCAAAGAAGGTGA
AAATAGATTGAGCAAGCAAGACGACAACGACAAAAGCTACTTGTACTTTG
TATCTCATCGAAAAACTAACTTTTGGTAACTACAATCTCATTTGATATGT
TTTCTCCCAAAAAATGTTGTTTAAAAGGATAGTGTGCTATTCTACTCAAC
ATTATTTTGGAGGGGAGGTCAAGCACTTTCTAACATAGAAAAGTAACTCT
GGAAGGTGAATATTAAGCAAAAGATTGTCTTTAATTTTTTCATTACACTA
CAACTATCATATTGGGTCAGTGGACTCTGAATAGCAAATTTCTTTGTAAC
ATTTTGATTTTCAGACAAGGATAGAAACGGTTACCTTATACTCAACATTA
TTTTGGGGGAGGGGAAAATTCATTCAAATATAGAAAAGATTCTAGTTTTT
TTTTTTTTTCTTGTCCTTTCATTATATTTGGCTGCAAAAATTGTTCGTAC
TTTCTTTTGTGGCACTACTCTCTTCGATTTTACAAAATGAAATTTGAAAG
TTTACTTTTAGGTTTTATGAAGAAAAAGAAGAATTATTTAGTTTTATTTA
CATATTTCACAGTATTGATGCGTCAAAAATAGATAGACTTGGCCGGTACA
TAAACGACTCGAAGACACCCAATTGTGCAGTGAAGATAGTTGAAAATAGT
CAAAACATCCCATGTGTATCAATTTTCGCCATAAAAGATATACAAGAAGG
AATGGAAGTTCGTTATAATTATAATGATCGAAATCTCTTCTGGAGAAAGC
AGGTATTTGAAATAGATTAACTTGATTTTAGTCTGTCTCTAGGTGATCTC
TACAATCATTGACATTTATATGAGGCGAAGAAATTCCCAACAAAATTTTA
AAACCAAAAATGATTTTAAAGTGCTGTAACTTTGGGTGAGTTTTAACTGA
GTTTTAACATTAGAATTAAGACTTAGGAGCTTAGGATATCCGGATCTAAA
AACTCGAAAATGGTCCAATAATTGGGTAATTTGGGAAGAATGGTGGGAAC
TTTTTTTTCCCCACAGAAATAACACCAAACCTTATCCCATCTCCTCAAGT
TTTGCATGTATAAAAACACTTTGCCTTTGCAGTGGTTGCTTTTACTTTTT
CGTTTTTTAGCCTGCAGGTCCACATCAGTCTTTACTGCCAA

Coding sequence (CDS) from alignment at sc0002158:11924..16364-

>TCONS_00039671 ID=TCONS_00039671|Name=TCONS_00039671|organism=Clytia hemisphaerica|type=CDS|length=6840bp|location=Sequence derived from alignment at sc0002158:11924..16364- (Clytia hemisphaerica)
TATTGATGCGTCAAAAATAGATAGACTTGGCCGGTACATAAACGACTCGA
AGACACCCAATTGTGCAGTGAAGATAGTTGAAAATAGTCAAAACATCCCA
TGTGTATCAATTTTCGCCATAAAAGATATACAAGAAGGAATGGAAGTTCG
TTATAATTATAATGATCGAAATCTCTTCTGGAGAAAGCAGGTATTTGAAA
TAGATTAAGTTATGGTGTCTTTGCTAAGCGACTGATTACAAAAGGTGAAT
TCATTGCATCTTACGAAGGAGAAAGGATAACTTGCAAAGAAGGTGAAAAT
AGATTGAGCAAGCAAGACGACAACGACAAAAGCTACTTGTACTTTGTATC
TCATCGAAAAACTAACTTTTGGTGTTGCCCAAAAGAATCAAAGTTGACAA
TAACGCGGTTGCTTTGGAATGGTTGGCATTAAAGAAAGATCCCGAGTACA
TTGAAAAACTTTTTATACATGATTTAATTGGTAGTTGATGCATTGGGAAG
TATTTTTGGAACAGGATCTCGTGTTAAAAAGAGATCTTCAAAAAATATGG
AAATAGATAGTTTGCCAATAAATTTCAAAACCAAGTTTGATGAAGGTGGT
ACATCAACCATCCACAAAATAACTTTAAAACGAAAAGCAACAGCTGTTAA
GCTGTTCAAAAACCAAGTTATTAAAAGAAAAATATCGCAAATTGCGAAAA
AATTAAGGCAGTTGGAACACCCAAATTTGGTAAGATTCATTGGATTTTCT
TCCAAACCTTCTGCACTGGTGTTTGAGTTTTGTCAGGTATCTATTGATGG
AAACGAGTTCAACAATTTGGCACAACTCGTCAACTACAAAAATGAAATTC
AAGCATTTTGTCTCAATGAAAGACTTGACTTTATGAGACAAATCTCAGAG
GGAATCTCCTATCTGCACAACAAACAGATCATTCATCGTGACATCAAACC
AAACAATTTTTTAGTCCAACAAAGTGATACTGGAGTTGTGGTCAAAGTGT
CTGATTTTGACGATGTAGTTGTCTTAAAGACTGCTATAACCTGCAGTACC
ACCAACTGGCAAGCTGGAATGACGCTTGCATACACTGCTCCAGAAATATG
CTCTGGAGCATCTGCCCACACGTCTTTCGAGACTGACATATACTCATTGG
CCGTGTGTTGTTTTCAAATCTTGTTTAACAAGCCATTTATATGGGAAGGT
GTGTTACCCTTCATGAACGACTCACTACTGATCAACGCTCTAGCAGAAAA
CAAACGACCCGATTTTGGCATGATTGAACAGCTATACGTAGCAGACATGA
AGAAAATTAAGGAGTTGATTGTAGGATGTTGGTCAACTGACCCCTCGGTT
AGACCCAAGATTTCAGAGTATTGATGCGTCAAAAATAGATAGACTTGGCC
GGTACATAAACGACTCGAAGACACCCAATTGTGCAGTGAAGATAGTTGAA
AATAGTCAAAACATCCCATGTGTATCAATTTTCGCCATAAAAGATATACA
AGAAGGAATGGAAGTTCGTTATAATTATAATGATCGAAATCTCTTCTGGA
GAAAGCAGGTATTTGAAATAGATTAAGTTATGGTGTCTTTGCTAAGCGAC
TGATTACAAAAGGTGAATTCATTGCATCTTACGAAGGAGAAAGGATAACT
TGCAAAGAAGGTGAAAATAGATTGAGCAAGCAAGACGACAACGACAAAAG
CTACTTGTACTTTGTATCTCATCGAAAAACTAACTTTTGGTGTTGCCCAA
AAGAATCAAAGTTGACAATAACGCGGTTGCTTTGGAATGGTTGGCATTAA
AGAAAGATCCCGAGTACATTGAAAAACTTTTTATACATGATTTAATTGGT
AGTTGATGCATTGGGAAGTATTTTTGGAACAGGATCTCGTGTTAAAAAGA
GATCTTCAAAAAATATGGAAATAGATAGTTTGCCAATAAATTTCAAAACC
AAGTTTGATGAAGGTGGTACATCAACCATCCACAAAATAACTTTAAAACG
AAAAGCAACAGCTGTTAAGCTGTTCAAAAACCAAGTTATTAAAAGAAAAA
TATCGCAAATTGCGAAAAAATTAAGGCAGTTGGAACACCCAAATTTGGTA
AGATTCATTGGATTTTCTTCCAAACCTTCTGCACTGGTGTTTGAGTTTTG
TCAGGTATCTATTGATGGAAACGAGTTCAACAATTTGGCACAACTCGTCA
ACTACAAAAATGAAATTCAAGCATTTTGTCTCAATGAAAGACTTGACTTT
ATGAGACAAATCTCAGAGGGAATCTCCTATCTGCACAACAAACAGATCAT
TCATCGTGACATCAAACCAAACAATTTTTTAGTCCAACAAAGTGATACTG
GAGTTGTGGTCAAAGTGTCTGATTTTGACGATGTAGTTGTCTTAAAGACT
GCTATAACCTGCAGTACCACCAACTGGCAAGCTGGAATGACGCTTGCATA
CACTGCTCCAGAAATATGCTCTGGAGCATCTGCCCACACGTCTTTCGAGA
CTGACATATACTCATTGGCCGTGTGTTGTTTTCAAATCTTGTTTAACAAG
CCATTTATATGGGAAGGTGTGTTACCCTTCATGAACGACTCACTACTGAT
CAACGCTCTAGCAGAAAACAAACGACCCGATTTTGGCATGATTGAACAGC
TATACGTAGCAGACATGAAGAAAATTAAGGAGTTGATTGTAGGATGTTGG
TCAACTGACCCCTCGGTTAGACCCAAGATTTCAGAGTATTGATGCGTCAA
AAATAGATAGACTTGGCCGGTACATAAACGACTCGAAGACACCCAATTGT
GCAGTGAAGATAGTTGAAAATAGTCAAAACATCCCATGTGTATCAATTTT
CGCCATAAAAGATATACAAGAAGGAATGGAAGTTCGTTATAATTATAATG
ATCGAAATCTCTTCTGGAGAAAGCAGGTATTTGAAATAGATTAAGTTATG
GTGTCTTTGCTAAGCGACTGATTACAAAAGGTGAATTCATTGCATCTTAC
GAAGGAGAAAGGATAACTTGCAAAGAAGGTGAAAATAGATTGAGCAAGCA
AGACGACAACGACAAAAGCTACTTGTACTTTGTATCTCATCGAAAAACTA
ACTTTTGGTGTTGCCCAAAAGAATCAAAGTTGACAATAACGCGGTTGCTT
TGGAATGGTTGGCATTAAAGAAAGATCCCGAGTACATTGAAAAACTTTTT
ATACATGATTTAATTGGTAGTTGATGCATTGGGAAGTATTTTTGGAACAG
GATCTCGTGTTAAAAAGAGATCTTCAAAAAATATGGAAATAGATAGTTTG
CCAATAAATTTCAAAACCAAGTTTGATGAAGGTGGTACATCAACCATCCA
CAAAATAACTTTAAAACGAAAAGCAACAGCTGTTAAGCTGTTCAAAAACC
AAGTTATTAAAAGAAAAATATCGCAAATTGCGAAAAAATTAAGGCAGTTG
GAACACCCAAATTTGGTAAGATTCATTGGATTTTCTTCCAAACCTTCTGC
ACTGGTGTTTGAGTTTTGTCAGGTATCTATTGATGGAAACGAGTTCAACA
ATTTGGCACAACTCGTCAACTACAAAAATGAAATTCAAGCATTTTGTCTC
AATGAAAGACTTGACTTTATGAGACAAATCTCAGAGGGAATCTCCTATCT
GCACAACAAACAGATCATTCATCGTGACATCAAACCAAACAATTTTTTAG
TCCAACAAAGTGATACTGGAGTTGTGGTCAAAGTGTCTGATTTTGACGAT
GTAGTTGTCTTAAAGACTGCTATAACCTGCAGTACCACCAACTGGCAAGC
TGGAATGACGCTTGCATACACTGCTCCAGAAATATGCTCTGGAGCATCTG
CCCACACGTCTTTCGAGACTGACATATACTCATTGGCCGTGTGTTGTTTT
CAAATCTTGTTTAACAAGCCATTTATATGGGAAGGTGTGTTACCCTTCAT
GAACGACTCACTACTGATCAACGCTCTAGCAGAAAACAAACGACCCGATT
TTGGCATGATTGAACAGCTATACGTAGCAGACATGAAGAAAATTAAGGAG
TTGATTGTAGGATGTTGGTCAACTGACCCCTCGGTTAGACCCAAGATTTC
AGAGTATTGATGCGTCAAAAATAGATAGACTTGGCCGGTACATAAACGAC
TCGAAGACACCCAATTGTGCAGTGAAGATAGTTGAAAATAGTCAAAACAT
CCCATGTGTATCAATTTTCGCCATAAAAGATATACAAGAAGGAATGGAAG
TTCGTTATAATTATAATGATCGAAATCTCTTCTGGAGAAAGCAGGTATTT
GAAATAGATTAAGTTATGGTGTCTTTGCTAAGCGACTGATTACAAAAGGT
GAATTCATTGCATCTTACGAAGGAGAAAGGATAACTTGCAAAGAAGGTGA
AAATAGATTGAGCAAGCAAGACGACAACGACAAAAGCTACTTGTACTTTG
TATCTCATCGAAAAACTAACTTTTGGTGTTGCCCAAAAGAATCAAAGTTG
ACAATAACGCGGTTGCTTTGGAATGGTTGGCATTAAAGAAAGATCCCGAG
TACATTGAAAAACTTTTTATACATGATTTAATTGGTAGTTGATGCATTGG
GAAGTATTTTTGGAACAGGATCTCGTGTTAAAAAGAGATCTTCAAAAAAT
ATGGAAATAGATAGTTTGCCAATAAATTTCAAAACCAAGTTTGATGAAGG
TGGTACATCAACCATCCACAAAATAACTTTAAAACGAAAAGCAACAGCTG
TTAAGCTGTTCAAAAACCAAGTTATTAAAAGAAAAATATCGCAAATTGCG
AAAAAATTAAGGCAGTTGGAACACCCAAATTTGGTAAGATTCATTGGATT
TTCTTCCAAACCTTCTGCACTGGTGTTTGAGTTTTGTCAGGTATCTATTG
ATGGAAACGAGTTCAACAATTTGGCACAACTCGTCAACTACAAAAATGAA
ATTCAAGCATTTTGTCTCAATGAAAGACTTGACTTTATGAGACAAATCTC
AGAGGGAATCTCCTATCTGCACAACAAACAGATCATTCATCGTGACATCA
AACCAAACAATTTTTTAGTCCAACAAAGTGATACTGGAGTTGTGGTCAAA
GTGTCTGATTTTGACGATGTAGTTGTCTTAAAGACTGCTATAACCTGCAG
TACCACCAACTGGCAAGCTGGAATGACGCTTGCATACACTGCTCCAGAAA
TATGCTCTGGAGCATCTGCCCACACGTCTTTCGAGACTGACATATACTCA
TTGGCCGTGTGTTGTTTTCAAATCTTGTTTAACAAGCCATTTATATGGGA
AGGTGTGTTACCCTTCATGAACGACTCACTACTGATCAACGCTCTAGCAG
AAAACAAACGACCCGATTTTGGCATGATTGAACAGCTATACGTAGCAGAC
ATGAAGAAAATTAAGGAGTTGATTGTAGGATGTTGGTCAACTGACCCCTC
GGTTAGACCCAAGATTTCAGAGTATTGATGCGTCAAAAATAGATAGACTT
GGCCGGTACATAAACGACTCGAAGACACCCAATTGTGCAGTGAAGATAGT
TGAAAATAGTCAAAACATCCCATGTGTATCAATTTTCGCCATAAAAGATA
TACAAGAAGGAATGGAAGTTCGTTATAATTATAATGATCGAAATCTCTTC
TGGAGAAAGCAGGTATTTGAAATAGATTAAGTTATGGTGTCTTTGCTAAG
CGACTGATTACAAAAGGTGAATTCATTGCATCTTACGAAGGAGAAAGGAT
AACTTGCAAAGAAGGTGAAAATAGATTGAGCAAGCAAGACGACAACGACA
AAAGCTACTTGTACTTTGTATCTCATCGAAAAACTAACTTTTGGTGTTGC
CCAAAAGAATCAAAGTTGACAATAACGCGGTTGCTTTGGAATGGTTGGCA
TTAAAGAAAGATCCCGAGTACATTGAAAAACTTTTTATACATGATTTAAT
TGGTAGTTGATGCATTGGGAAGTATTTTTGGAACAGGATCTCGTGTTAAA
AAGAGATCTTCAAAAAATATGGAAATAGATAGTTTGCCAATAAATTTCAA
AACCAAGTTTGATGAAGGTGGTACATCAACCATCCACAAAATAACTTTAA
AACGAAAAGCAACAGCTGTTAAGCTGTTCAAAAACCAAGTTATTAAAAGA
AAAATATCGCAAATTGCGAAAAAATTAAGGCAGTTGGAACACCCAAATTT
GGTAAGATTCATTGGATTTTCTTCCAAACCTTCTGCACTGGTGTTTGAGT
TTTGTCAGGTATCTATTGATGGAAACGAGTTCAACAATTTGGCACAACTC
GTCAACTACAAAAATGAAATTCAAGCATTTTGTCTCAATGAAAGACTTGA
CTTTATGAGACAAATCTCAGAGGGAATCTCCTATCTGCACAACAAACAGA
TCATTCATCGTGACATCAAACCAAACAATTTTTTAGTCCAACAAAGTGAT
ACTGGAGTTGTGGTCAAAGTGTCTGATTTTGACGATGTAGTTGTCTTAAA
GACTGCTATAACCTGCAGTACCACCAACTGGCAAGCTGGAATGACGCTTG
CATACACTGCTCCAGAAATATGCTCTGGAGCATCTGCCCACACGTCTTTC
GAGACTGACATATACTCATTGGCCGTGTGTTGTTTTCAAATCTTGTTTAA
CAAGCCATTTATATGGGAAGGTGTGTTACCCTTCATGAACGACTCACTAC
TGATCAACGCTCTAGCAGAAAACAAACGACCCGATTTTGGCATGATTGAA
CAGCTATACGTAGCAGACATGAAGAAAATTAAGGAGTTGATTGTAGGATG
TTGGTCAACTGACCCCTCGGTTAGACCCAAGATTTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023978XLOC_023978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039671-exon-sc0002158-1575043694:15527..16364TCONS_00039671-exon-sc0002158-1575043694:15527..16364Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1575043694:13817..13867TCONS_00039671-exon-sc0002158-1575043694:13817..13867Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1575043694:13426..13534TCONS_00039671-exon-sc0002158-1575043694:13426..13534Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1575043694:12990..13152TCONS_00039671-exon-sc0002158-1575043694:12990..13152Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1575043694:11924..12502TCONS_00039671-exon-sc0002158-1575043694:11924..12502Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1510915933:15527..16364TCONS_00039671-exon-sc0002158-1510915933:15527..16364Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1510915933:13817..13867TCONS_00039671-exon-sc0002158-1510915933:13817..13867Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1510915933:13426..13534TCONS_00039671-exon-sc0002158-1510915933:13426..13534Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1510915933:12990..13152TCONS_00039671-exon-sc0002158-1510915933:12990..13152Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1510915933:11924..12502TCONS_00039671-exon-sc0002158-1510915933:11924..12502Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1491911889:15527..16364TCONS_00039671-exon-sc0002158-1491911889:15527..16364Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1491911889:13817..13867TCONS_00039671-exon-sc0002158-1491911889:13817..13867Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1491911889:13426..13534TCONS_00039671-exon-sc0002158-1491911889:13426..13534Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1491911889:12990..13152TCONS_00039671-exon-sc0002158-1491911889:12990..13152Clytia hemisphaericaexon
TCONS_00039671-exon-sc0002158-1491911889:11924..12502TCONS_00039671-exon-sc0002158-1491911889:11924..12502Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039671-proteinTCONS_00039671-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002158supercontigsc0002158:11924..16364 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.39394	0.090389	0.498514	0.38504	1.71875	1.01246	0.655434	0.585718	0.253856	0.387005	0.234773	0.385826	0.277408	0.160051	0.618442	0.706046	0.835	0.695376	0.4434	0.386655	0.941006	0.622914	0.345405	0.531424	0	0.133227	0.571944	0.406929	0.180041	0.157228
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00039671 vs. Swiss-Prot (Human)
Match: M3K7 (Mitogen-activated protein kinase kinase kinase 7 OS=Homo sapiens GN=MAP3K7 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.466e-17
Identity = 74/291 (25.43%), Postives = 130/291 (44.67%), Query Frame = 2 
Query:   20 EIDSLPINFKTKFDEGGTSTIHKITLKRKATAVKLFKNQVIKRKISQIAKKLRQLEHPNLVRFIGFSSKPSALVFEFCQVSIDGNEFNNLAQLVNYKNEIQAFCLNERLDFMRQISEGISYLHNKQ---IIHRDIKPNNFLVQQSDTGXXXXXXXXXXXXXLKTAITCSTTNWQAGMT-----LAYTAPEICSGASAHTSFETDIYSLAVCCFQILF-NKPFIWEGVLPFMNDSLLINALAENKRPDFGMIEQLYVADMKKIKELIVGCWSTDPSVRPKISEVVDALGSIF 865
            EID   I  +     G    + K   + K  A+K  +++  ++      ++L ++ HPN+V+  G    P  LV E+        E  +L  +++    +  +     + +  Q S+G++YLH+ Q   +IHRD+KP N L+    T             VLK     +  + Q  MT      A+ APE+  G  ++ S + D++S  +  ++++   KPF   G   F     ++ A+    RP   +I+ L     K I+ L+  CWS DPS RP + E+V  +  + 
Sbjct:   30 EIDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYA-------EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGT-------------VLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEG--SNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR----IMWAVHNGTRPP--LIKNL----PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLM 288
The following BLAST results are available for this feature:
BLAST of TCONS_00039671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
M3K79.466e-1725.43Mitogen-activated protein kinase kinase kinase 7 O... [more]
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