TCONS_00039661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039661
Unique NameTCONS_00039661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039661 ID=TCONS_00039661|Name=TCONS_00039661|organism=Clytia hemisphaerica|type=transcript|length=497bp
ATAGTGTTTGATTTTGATGGTCTCTTTGTTAATTAGCTTTGTTTCGTTCA
AACAAACTATGTCAGGTTTTTCTTCAGCTAAGAGAGTTTGTAGATCTTGT
TTTTTCGATTTAAATCCGTTAAGGTttaattgaattatttttaagCTCAT
CATTTTGGAGACAGGGACATCGGTGGTTCTTCAAGAATTAAAGAGGTATT
TCTGAGTTCATCTAGGGAATTTAGGAAgttttctttatcaaatttgtTAT
GGTGTCTCTTCATGATGGATTGAAGATGAAAGCAAATGTCAATGTGTGTA
GTCATTTTCTGTTGCTCAATAGCATGGCAAGCTTCAAAAAGAATTAAAGA
TAAAGTTTCGATGCTAACAGATTTNGTTATGGTGTCTCTTCATGATGGAT
TGAAGATGAAAGCAAATGTCAATGTGTGTAGTCATTTTCTGTTGCTCAAT
AGCATAGCAAGCTTCAAAAAGAATTAAAGATAGAGTTTCGATGTCAA
Run BLAST on NCBI

transcript from alignment at sc0002157:9429..9925

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039661 ID=TCONS_00039661|Name=TCONS_00039661|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0002157:9429..9925 (Clytia hemisphaerica)
TTGACATCGAAACTCTATCTTTAATTCTTTTTGAAGCTTGCTATGCTATT
GAGCAACAGAAAATGACTACACACATTGACATTTGCTTTCATCTTCAATC
CATCATGAAGAGACACCATAACNAAATCTGTTAGCATCGAAACTTTATCT
TTAATTCTTTTTGAAGCTTGCCATGCTATTGAGCAACAGAAAATGACTAC
ACACATTGACATTTGCTTTCATCTTCAATCCATCATGAAGAGACACCATA
acaaatttgataaagaaaacTTCCTAAATTCCCTAGATGAACTCAGAAAT
ACCTCTTTAATTCTTGAAGAACCACCGATGTCCCTGTCTCCAAAATGATG
AGcttaaaaataattcaattaaACCTTAACGGATTTAAATCGAAAAAACA
AGATCTACAAACTCTCTTAGCTGAAGAAAAACCTGACATAGTTTGTTTGA
ACGAAACAAAGCTAATTAACAAAGAGACCATCAAAATCAAACACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023968XLOC_023968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039661-exon-sc0002157-1491911889:9429..9925TCONS_00039661-exon-sc0002157-1491911889:9429..9925Clytia hemisphaericaexon
TCONS_00039661-exon-sc0002157-1510915933:9429..9925TCONS_00039661-exon-sc0002157-1510915933:9429..9925Clytia hemisphaericaexon
TCONS_00039661-exon-sc0002157-1575043694:9429..9925TCONS_00039661-exon-sc0002157-1575043694:9429..9925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002157supercontigsc0002157:9429..9925 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123187	0.120126	0	0	0.166124	0.131273	0	0.296539	0	0.128582	0	0	0.409638	0	0	0	0	0	0	0	0.238208	0.174284	0	0.128411	0.26452	0.472156	0	0	0	0.139304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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