TCONS_00039644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039644
Unique NameTCONS_00039644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039644 ID=TCONS_00039644|Name=TCONS_00039644|organism=Clytia hemisphaerica|type=transcript|length=151bp
TAAATTATTACATTTCATATAACATTCTATCATAATTTTTAGGCTTCATG
GAAACTTTTTAACGCCTGGCAATTTCATATGAAAGGTTGTACACCAAAGA
CTCAATGCAACAGTGACAAACTATGTGGTTCAGCTGAGAGAGATTGTTTG
G
Run BLAST on NCBI

transcript from alignment at sc0002155:14124..21531+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039644 ID=TCONS_00039644|Name=TCONS_00039644|organism=Clytia hemisphaerica|type=transcript|length=7408bp|location=Sequence derived from alignment at sc0002155:14124..21531+ (Clytia hemisphaerica)
TAAATTATTACATTTCATATAACATTCTATCATAATTTTTAGGCTTCATG
GAAACTTTTTAACGCCTGGCAATTTCATATGAAAGGTTGTACACCGAAGA
CTCAGTGCAACAGTGACAAATTATGTGGTTCAGCAGAGAGAGATTGTTTG
GTAAGATATTCACATTCTTGATTGTAAGAGTTGAATAGAGTGACCTCTGA
AGAGAAGATAATCTTATTTTGTTTCACAGACTTGAACAATCTCATTCGTG
GTCATAATTAGCTGATTTCTAAGAGCCATCTAACTCCAGTCTGTTTCAAA
CTGTCTAATCAACATATACCCCCGGTATAACCACAAGtctataaagcccg
aagagATAGATAAagtatttttgctgaaaaatgagCCTCAGTGGGAATGA
GATAAagtatttttgctgaaaaatgagCCTCAGTGGGAATGACAACTTTA
TCAAAATACCGATGGGGATCAATTGTTTCAAGAGTGGATgcaatattttt
tctatttaattTCCGATGGGAATAAAGCAATAGAACACTTCCCAGTAGGG
TTAATTTAATCCACCAGGAAAGATTATTTGGTCATTTTTTTCAGTGGGGT
GGGGGCTCCAACGGGTATGTGACACGGGGATGTAGACAACGTAATTTTTA
GTTGCGAAGACTGCTGCGAAAGATGATCCAATCAGTATTTAATAGAGATC
TGTGCatataacaattttatttttttctttctagtaCAAATGCTGTGAAA
CAGAAAGCTGCAATGGCTCGATGTGACgataaaatgaatttatttttgat
ttatttttgatttatgatttatttatgatttatttttaatttatttttca
tttatctctacagtatgtggcccccaaaacgtcgatcaaatttgaaattt
ctctcaaatctagaaggaaaagaggttttacaatttttttgctgcatgaa
aagctttaacatctctactttatttcctggaaggtcattttcaaaatttt
caatttcagcaATATTTTTAAATCACTCAAAGATAGggagcttttttcta
atggcccccaaaacggagggttgcaattttagcgatttctcgagatatct
ttaagatatgaatacaaaattttgaccatagtttttaaatgcgatttaga
gggttttgggcataaatttgtttggtaaaatttttacagtggttgtcaaa
acggaggtttgcaattttagcgatttctcgagatatctttaagatatgaa
tacaaaattttgaccatagtttttaaatgcgatttagagggttttgggca
taaatttgtttggtaaaatttttacagtggttgtcaaaacggaggtttgg
ggcccccaaaacgtaggtgtagttaaaatcaaattattaagcccagtggt
aatagggggagaaactatgaacatatttgtgttttcccttaaatttacga
cccgatggatgtaaaatttatgatttttataaaatatttcaagattgtcg
acgatgcaaagtccaaaatgaaaattaagacattttcaaaatgacaattt
tgatttacaacgtcttaatcaagtttctgaaaaccaatctcttttgaaaa
tagttccattcatgtatggaatatgctgtggaaattttagaaaaacagct
taactgaaactgaaaatattaaactttaaaggtatttttctcctatattt
tgttaaaaaatgagagaatttgccgtttttgctgattcagcgaagaattt
tatatataatgttaattttttgttataaactattaactcaagctgatagg
aatggaattccaagattttttgctgtttctcatgtttagaattttcggtt
ttatcaatgctgattctaaggccccaaaatactggttgacctttaagatg
ctatatcttttatccattctctaaagtcacagatgtatctgcattttttG
AAGGGCATTAGGtttagaaagtttcctatacctcattttcataatttatt
ttcaatatccaaggagctaaagtgagttatatgcaatttttatctaattt
tggtgttaaaatatttccttcagacgcaagTATGTTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtttaattctgataaatcttcaagtcagaatcctcattttaatgacga
cctccgttttgggggccgtctccgttttgggggccgtctccgttttgggg
gccgtctacattttgggggccatatactgtaatttatgaataggagtaat
tttatggaaaatttttttcaaattataacgaactgataatcaaaattatt
ttcaaaaaattaaaaaaaattgaaaaaattaaaaaaagttgaaaagtaat
tttttttcgaaagattttttttttatttttgatttattcatgatttattt
ctgatttattgttgatttattgatttatttctgatttatttttgatttat
tgatttatttctgatttatttttgatttctgatttatttctgatttattt
ttgatttctgatttatttctgatttatttttgatttctgatttatttttg
atttatttttgatttttgatttatttttgatttatttttgatttatagaa
ttatgtacgagatttattttagtgatttgcccctccacatttttaacaag
tatattgaaatataatagccttgtcatgaaaaattgaaaaaaacttcaca
taataagccctaataagcacaatactccaaacttctagggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNttcaacccccagccgggtcataccaaagattctcaaaa
tggtacttgatgcctctctgcttgatgctcagcaactaagaggatcaagg
gtaagtggagaaatccagggagaaagagtggcgcccccccctacctttgg
gtagatagctatcgaaagaggagccttcgggtcgcctccgactgcggtcg
cagacttacttactacttacttacttaaactATCTGCACCGTGCAGGTAC
CGTGAGTGTCACAACTTGGTTTTCTTTGAGATACAAAGCATATAGATGGG
GAGAAGGAAGAAGTCATAAGAGGCGTATTTTCGCGCAGTCGAAGATagag
cgaaaattagtttctccGCGATCTCACACTCAAATAGTAGGGCGTCAGGG
CGTGATCGTGAATGGGCGGACGGGCGTCCGAGAGACATGGGTTCGAGTAC
GCATGCTCAGATGAGACATGTATGGGTTTAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCGT
TAGATATTTATATTGTCTCTATCATATTAAAACCCCAATGTTGCTACATA
AGACACCATATAGCCAACTTTTGTGCAATTTGTTATAATTGTGAAATTTA
TGAACTGAGCAAAACAGGTAAAGTTTTGATAGTGATTTTTAAACTCAACA
CAAACAAATAACCTGGTACTTCGATTACTTCTTCCTTGAAGCGCCTCGTC
GAATAATGCCCCTCCTTTAGAGAAGATTTTCAAcgggtgtttattcgaag
taatacggtgaAATCTCTTCTCCATATAGTTGATGGTTTGCGTTGTCAAC
AATGTTACAGCCAGAAATCAATGACCACCTGTTCAAGTCAACAATATGAA
GCACATTGTGATGTCTCTGAAATGTGTTTCCAGGTAAAACTCTTACCAGG
GCTTTTGGGGCAGGTTTTAGacataaagaagaaaaattccaaaaagttTG
TACTCACTTTGCTCACATAGTTTTTCCAAAAGTATTTTCCTTTAAAGGGG
ACACCAAAATAACCAATCTGGGAATTGGCTCCTCATATTGCCCCGATTAC
GATCAAACCACCACGCTACGCTATCAACACGTAGAAACGAAGAAGTATGT
CCAAAAAACGTCATGCTACTAGTTACAGCTCGAAACTTAAAGTCATATTT
CCAACCGAAATTTCGTGTTGCTTTAGAAAACTTAGACCAAGATCTCTCAG
CAAAAACTTCTGAAATTTTTGGCGTACCATCGAGGTTTCACGAATTACGc
tgatttgacgaaaaaaaatagGTAAATCTTAAGGTTTAAGATATAATGCT
TTATATGTATTATATTTTAAGGTATATAATATTTTATCCTAATTTTTAGG
CTTCATGGAAACTTTTTAACGCCTGGCAATTCCATATGAAAGGTTGTACA
CCAAAGACTCAATGCAACAGTGACAAACTATGTGGTTCAGCTGAGAGAGA
TTGTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023951XLOC_023951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039644-exon-sc0002155-1491911889:14124..14208TCONS_00039644-exon-sc0002155-1491911889:14124..14208Clytia hemisphaericaexon
TCONS_00039644-exon-sc0002155-1510915933:14124..14208TCONS_00039644-exon-sc0002155-1510915933:14124..14208Clytia hemisphaericaexon
TCONS_00039644-exon-sc0002155-1575043694:14124..14208TCONS_00039644-exon-sc0002155-1575043694:14124..14208Clytia hemisphaericaexon
TCONS_00039644-exon-sc0002155-1491911889:21466..21531TCONS_00039644-exon-sc0002155-1491911889:21466..21531Clytia hemisphaericaexon
TCONS_00039644-exon-sc0002155-1510915933:21466..21531TCONS_00039644-exon-sc0002155-1510915933:21466..21531Clytia hemisphaericaexon
TCONS_00039644-exon-sc0002155-1575043694:21466..21531TCONS_00039644-exon-sc0002155-1575043694:21466..21531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002155supercontigsc0002155:14124..21531 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top