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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039643 ID=TCONS_00039643|Name=TCONS_00039643|organism=Clytia hemisphaerica|type=transcript|length=390bp
gaaaaaaacacaaaacaaaatgcttGCTATCGAGAACAAAAATCATTTAC
TCAGACGCACACAACAATTTTGATGATGGTGTGattcgaatttttttctg
aGTTTTAAAACTGTtgacaaagatgaaaaattttgtCCTGTTTCTGGCAT
TTGTTTTCAtgacattttcaaataaagTTGATGGTTTGCGTTGTCAACAA
TGTTACAGCCAGAAATCAATGACCACCTGTTCAAGTCAACAATATGAAGC
ACATTGTGATGTCTCTGAAATGTGTTTCCAGGCTTCATGGAAACTTTTTA
ACGCCTGGCAATTCCATATGAAAGGTTGTACACCAAAGACTCAATGCAAC
AGTGACAAACTATGTGGTTCAGCTGAGAGAGATTGTTTGG Run BLAST on NCBI transcript from alignment at sc0002155:12687..21531+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039643 ID=TCONS_00039643|Name=TCONS_00039643|organism=Clytia hemisphaerica|type=transcript|length=8845bp|location=Sequence derived from alignment at sc0002155:12687..21531+ (Clytia hemisphaerica)
gaaaaaaacacaaaacaaaatgcttGCTATCGAGAACAAAAATCATTTAC
TCAGACGCACACAACAATTTTGATGATGGTGTGattcgaatttttttctg
aGTTTTAAAACTGTtgacaaagatgaaaaattttgtCCTGTTTCTGGCAT
TTGTTTTCAtgacattttcaaataaaggtaagattaattttaaatgaata
tctaaaataatttGATCAAACCATCACTGGTTAGATATCTATATTGTCTC
CCCAATGTTGCTGCATTAGACATCATTCGACCCAATCTCGTACCCAAAGC
CATTTGTAGTTTTTGTCCGACCCAACTTCCatgtaggcttctgctcatcc
tctagcgaaaaaagtttcctataggaagtataggtctgcgaatTAGACTA
ACTTCCATGTAGTGCAACGATCGTTAAGTGTATTTTTTCCCCGATCTCAT
AGCCATGTGTTATTTGTTATGATTGTGCAATTTACCGTGCTTACCGTACA
ACAACCCAATAGTTCCCTTAACAATCAAGAGCGCCAAAATCGCCAAAAAG
TGGCTATCACAGCACTATccgaatttttgcgattttggcgTTTTTCGATT
GTTCAGTGAACTATTGGTTTGTTATACAATAGGTAAGTACATTTTAAACA
GTATGAACTGAACAAAACAGGGAATCAAAAGGGTTTAATGTTTTGGTAGT
GCTTTAAACCCACCACAAATAAATTACCGTGTTACTTCAATTGAACATCT
CCTTCCTTTAAACGCCTCGTAAAACGCCCCTCCTTTAGGGAAAATCTTCA
ATGGATGCTTATGCGAAGGAATACGGTAATTCAAGGTTAATGAATTTCTC
CTCCATAGTTGATGGTTTACGTTGCCAACAATGTTTCAGTCAGAAATCAA
TGACCACCTGTTCAAGTCAACAATATGAAGCACATTGTGATGTCTCTGAA
ATGTGTTTTCAGCTTAAAGTAGTCAGTAGCATGGTAGCAGATATCATCAG
tcataaagaggaaaaatatctaaaaatatttctacTCGCTTTGCTCACAT
AATtgttccaaaaatattttcctttaaaggggacaccaaaaaaaaaaaaa
tttgggaaaattggCTCATCAGTTTGCGCCAATTTCGATCAAACCACTAC
GCTACCAACACGTAGAAATGAACAAATATGTCCAAAAATTGTCCCCCTAT
TAATTATAGCTTATGAAAAGTAAAGTCATTTCCAACCGAAATTCCGTTgt
tgtttaaaaaaacttagaCGTAGAGCTCTTGAAAACTGcgggaaaaacct
ttttttctgaAACTCTTTTTAAACCCACCATCAAGGTTTGACGTCTCAAA
TTTTTAGAAGAATTATGCAAAAAGAAATTGCTGATTCGACAAAAAATCAG
GCgccgcaaaatttaagtttaaattGTTATCTTCCGTTAAATTATTACAT
TTCATATAACATTCTATCATAATTTTTAGGCTTCATGGAAACTTTTTAAC
GCCTGGCAATTTCATATGAAAGGTTGTACACCGAAGACTCAGTGCAACAG
TGACAAATTATGTGGTTCAGCAGAGAGAGATTGTTTGGTAAGATATTCAC
ATTCTTGATTGTAAGAGTTGAATAGAGTGACCTCTGAAGAGAAGATAATC
TTATTTTGTTTCACAGACTTGAACAATCTCATTCGTGGTCATAATTAGCT
GATTTCTAAGAGCCATCTAACTCCAGTCTGTTTCAAACTGTCTAATCAAC
ATATACCCCCGGTATAACCACAAGtctataaagcccgaagagATAGATAA
agtatttttgctgaaaaatgagCCTCAGTGGGAATGAGATAAagtatttt
tgctgaaaaatgagCCTCAGTGGGAATGACAACTTTATCAAAATACCGAT
GGGGATCAATTGTTTCAAGAGTGGATgcaatattttttctatttaattTC
CGATGGGAATAAAGCAATAGAACACTTCCCAGTAGGGTTAATTTAATCCA
CCAGGAAAGATTATTTGGTCATTTTTTTCAGTGGGGTGGGGGCTCCAACG
GGTATGTGACACGGGGATGTAGACAACGTAATTTTTAGTTGCGAAGACTG
CTGCGAAAGATGATCCAATCAGTATTTAATAGAGATCTGTGCatataaca
attttatttttttctttctagtaCAAATGCTGTGAAACAGAAAGCTGCAA
TGGCTCGATGTGACgataaaatgaatttatttttgatttatttttgattt
atgatttatttatgatttatttttaatttatttttcatttatctctacag
tatgtggcccccaaaacgtcgatcaaatttgaaatttctctcaaatctag
aaggaaaagaggttttacaatttttttgctgcatgaaaagctttaacatc
tctactttatttcctggaaggtcattttcaaaattttcaatttcagcaAT
ATTTTTAAATCACTCAAAGATAGggagcttttttctaatggcccccaaaa
cggagggttgcaattttagcgatttctcgagatatctttaagatatgaat
acaaaattttgaccatagtttttaaatgcgatttagagggttttgggcat
aaatttgtttggtaaaatttttacagtggttgtcaaaacggaggtttgca
attttagcgatttctcgagatatctttaagatatgaatacaaaattttga
ccatagtttttaaatgcgatttagagggttttgggcataaatttgtttgg
taaaatttttacagtggttgtcaaaacggaggtttggggcccccaaaacg
taggtgtagttaaaatcaaattattaagcccagtggtaatagggggagaa
actatgaacatatttgtgttttcccttaaatttacgacccgatggatgta
aaatttatgatttttataaaatatttcaagattgtcgacgatgcaaagtc
caaaatgaaaattaagacattttcaaaatgacaattttgatttacaacgt
cttaatcaagtttctgaaaaccaatctcttttgaaaatagttccattcat
gtatggaatatgctgtggaaattttagaaaaacagcttaactgaaactga
aaatattaaactttaaaggtatttttctcctatattttgttaaaaaatga
gagaatttgccgtttttgctgattcagcgaagaattttatatataatgtt
aattttttgttataaactattaactcaagctgataggaatggaattccaa
gattttttgctgtttctcatgtttagaattttcggttttatcaatgctga
ttctaaggccccaaaatactggttgacctttaagatgctatatcttttat
ccattctctaaagtcacagatgtatctgcattttttGAAGGGCATTAGGt
ttagaaagtttcctatacctcattttcataatttattttcaatatccaag
gagctaaagtgagttatatgcaatttttatctaattttggtgttaaaata
tttccttcagacgcaagTATGTTANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttaattctg
ataaatcttcaagtcagaatcctcattttaatgacgacctccgttttggg
ggccgtctccgttttgggggccgtctccgttttgggggccgtctacattt
tgggggccatatactgtaatttatgaataggagtaattttatggaaaatt
tttttcaaattataacgaactgataatcaaaattattttcaaaaaattaa
aaaaaattgaaaaaattaaaaaaagttgaaaagtaattttttttcgaaag
attttttttttatttttgatttattcatgatttatttctgatttattgtt
gatttattgatttatttctgatttatttttgatttattgatttatttctg
atttatttttgatttctgatttatttctgatttatttttgatttctgatt
tatttctgatttatttttgatttctgatttatttttgatttatttttgat
ttttgatttatttttgatttatttttgatttatagaattatgtacgagat
ttattttagtgatttgcccctccacatttttaacaagtatattgaaatat
aatagccttgtcatgaaaaattgaaaaaaacttcacataataagccctaa
taagcacaatactccaaacttctagggNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
tcaacccccagccgggtcataccaaagattctcaaaatggtacttgatgc
ctctctgcttgatgctcagcaactaagaggatcaagggtaagtggagaaa
tccagggagaaagagtggcgcccccccctacctttgggtagatagctatc
gaaagaggagccttcgggtcgcctccgactgcggtcgcagacttacttac
tacttacttacttaaactATCTGCACCGTGCAGGTACCGTGAGTGTCACA
ACTTGGTTTTCTTTGAGATACAAAGCATATAGATGGGGAGAAGGAAGAAG
TCATAAGAGGCGTATTTTCGCGCAGTCGAAGATagagcgaaaattagttt
ctccGCGATCTCACACTCAAATAGTAGGGCGTCAGGGCGTGATCGTGAAT
GGGCGGACGGGCGTCCGAGAGACATGGGTTCGAGTACGCATGCTCAGATG
AGACATGTATGGGTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCGTTAGATATTTATAT
TGTCTCTATCATATTAAAACCCCAATGTTGCTACATAAGACACCATATAG
CCAACTTTTGTGCAATTTGTTATAATTGTGAAATTTATGAACTGAGCAAA
ACAGGTAAAGTTTTGATAGTGATTTTTAAACTCAACACAAACAAATAACC
TGGTACTTCGATTACTTCTTCCTTGAAGCGCCTCGTCGAATAATGCCCCT
CCTTTAGAGAAGATTTTCAAcgggtgtttattcgaagtaatacggtgaAA
TCTCTTCTCCATATAGTTGATGGTTTGCGTTGTCAACAATGTTACAGCCA
GAAATCAATGACCACCTGTTCAAGTCAACAATATGAAGCACATTGTGATG
TCTCTGAAATGTGTTTCCAGGTAAAACTCTTACCAGGGCTTTTGGGGCAG
GTTTTAGacataaagaagaaaaattccaaaaagttTGTACTCACTTTGCT
CACATAGTTTTTCCAAAAGTATTTTCCTTTAAAGGGGACACCAAAATAAC
CAATCTGGGAATTGGCTCCTCATATTGCCCCGATTACGATCAAACCACCA
CGCTACGCTATCAACACGTAGAAACGAAGAAGTATGTCCAAAAAACGTCA
TGCTACTAGTTACAGCTCGAAACTTAAAGTCATATTTCCAACCGAAATTT
CGTGTTGCTTTAGAAAACTTAGACCAAGATCTCTCAGCAAAAACTTCTGA
AATTTTTGGCGTACCATCGAGGTTTCACGAATTACGctgatttgacgaaa
aaaaatagGTAAATCTTAAGGTTTAAGATATAATGCTTTATATGTATTAT
ATTTTAAGGTATATAATATTTTATCCTAATTTTTAGGCTTCATGGAAACT
TTTTAACGCCTGGCAATTCCATATGAAAGGTTGTACACCAAAGACTCAAT
GCAACAGTGACAAACTATGTGGTTCAGCTGAGAGAGATTGTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039643-exon-sc0002155-1491911889:12687..12863 | TCONS_00039643-exon-sc0002155-1491911889:12687..12863 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1510915933:12687..12863 | TCONS_00039643-exon-sc0002155-1510915933:12687..12863 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1575043694:12687..12863 | TCONS_00039643-exon-sc0002155-1575043694:12687..12863 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1491911889:20853..20956 | TCONS_00039643-exon-sc0002155-1491911889:20853..20956 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1510915933:20853..20956 | TCONS_00039643-exon-sc0002155-1510915933:20853..20956 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1575043694:20853..20956 | TCONS_00039643-exon-sc0002155-1575043694:20853..20956 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1491911889:21423..21531 | TCONS_00039643-exon-sc0002155-1491911889:21423..21531 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1510915933:21423..21531 | TCONS_00039643-exon-sc0002155-1510915933:21423..21531 | Clytia hemisphaerica | exon |
| TCONS_00039643-exon-sc0002155-1575043694:21423..21531 | TCONS_00039643-exon-sc0002155-1575043694:21423..21531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002155 | supercontig | sc0002155:12687..21531 + |
Blast
The following BLAST results are available for this feature:
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