TCONS_00039602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039602
Unique NameTCONS_00039602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039602 ID=TCONS_00039602|Name=TCONS_00039602|organism=Clytia hemisphaerica|type=transcript|length=1762bp
AATTATGGTATCAATGCCCTGTTGCAATATCAATTATGGTATCAATGCTT
TGTCGCAATACCAATTATGGTATCAATGCTTTGTTGCAATACCAATTACA
GTATCAATGCTTTGTTACAATACCAACTATGCTATCGATGTTTTGTTGCA
ATTTGAATTATGGTATCAATGCTTTGTTGCAATACCAACTGTAATATCAA
TGCTCTGTTACAATATCAATTATGGTATCAATGCTCTGTTGCAATATCAA
TTACGGTATCAATGCTTTGTTGCAATACCGACTATGGTATCAATGCTTTG
TTGCAATACATTATCTTCAGGTAtaagagttatttttaaaaacttttttc
atccttattttcTTAAAGCATCCCCGAAGAACCCTCTAGAAAGGCTCGAA
GGCATCAAAGACGAAAAACAATCATCTGGTTTTTCTCCCCCACAGGAAGT
CCTTTAGTCAAACTGGCATTCGAGGGTggcaaacgactaattttgtCCAA
AGATTGAAATCCAAAAAGAATGCCTAAAGAGATTCTCACAACAGATTTAT
AATCAAAGCCATTATTGATAAGTTTATTTCGACAGAAAATCTTTTAGTTT
CATTCTGATGACTATTCTTCGCTTTTCAGGATTTTTACGTATCAGCAAAA
TGCTGCAGATACAAATCCAACACATTACTTTTTGCCAATCAGGGGTGAAA
ATCTTTTTACCAAAGTCAAAAACAGACCAAATTAGAGAGGGGAATGCCGT
CTTCATCAGTGCNGGTGAAAATCTTTTTACCAAAGTCAAAACAGACCAAA
TTAGAGAGGGGAATACCGCCTTCATCAGTGCCAAAGGTTCTTATTACCCT
ATTTACTAGTTACAGAAATATATCAATCTTGCTAAATTTTCCCGACCAAA
CGATTATCTGTTTTGCCGACTCTTTAAGTGTAAGATTGGTCATTCGGCCA
TGGAAACCTACCAATTTCATACACCACAGCCAGAGACTCATTGAAGGGCC
ACTTAACCGGTATTTTTGAAGACAAGGCTAAGTATGGCTTGCATTCTCTT
CGTTCTGGGGTTACAGCCGAAGCAGCTAACAACGGTGTGTCAGATAGAAT
GATCTCAAAACATGGTCGCTGGTCGTCCAATACTAGTCGTGATACGTACA
TTAAAGANCCAACGATCGAAGAAAGGTGGAAATCGAGCTTCTCCGCGTTT
TTCGTACGAAAATCTACCATCTTGCGCAGATTGGAACAAACTGCGCATGT
GCAATATGCTTTAAAGAAGCTGCTTGTCAGCTTGTCCATCCTCGCTCTTG
CATACGCCTTGAACTAAGTTAAGTTTCACATTTAAGTTTACTGTTATGAC
ATTAATgctatttctttttcttacaCGCTCCCGAACCTGGAAAACCCGTT
TATCAATGCTGGGCAACCATGACCCAACGATCAAGATGTTCTACTGGAGC
GATACCGGGACACAACTATCATTGAGACATACATTCGAATTACAGTTGCA
AAATACGTTACATTATAAAAATTCGACACTCTAACGTGGACATTTGAAAC
GATGAAAGAACTTTATACCAGAAACCAAACtataaaatgttttgaatttt
ttacgTTATATTTCACATTATAAAGTGGGAGGACCTTTAACCTCCGAAGG
TCGGCGTGACGGATGCCTTGGTCGGAGATAATGTTTCCTCCAGAATAAAC
AGCCACTGGGGGTTTTACGCTACATGCTTCGTCACAGTACAATTTAATTA
TTCCAAAGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00039602-protein

>TCONS_00039602-protein ID=TCONS_00039602-protein|Name=TCONS_00039602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
IMVSMPCCNINYGINALSQYQLWYQCFVAIPITVSMLCYNTNYAIDVLLQ
FELWYQCFVAIPTVISMLCYNINYGINALLQYQLRYQCFVAIPTMVSMLC
CNTLSSGIRVIFKNFFHPYFLKASPKNPLERLEGIKDEKQSSGFSPPQEV
L
Run BLAST on NCBI

transcript from alignment at sc0002147:17587..19348-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039602 ID=TCONS_00039602|Name=TCONS_00039602|organism=Clytia hemisphaerica|type=transcript|length=1762bp|location=Sequence derived from alignment at sc0002147:17587..19348- (Clytia hemisphaerica)
AATTATGGTATCAATGCCCTGTTGCAATATCAATTATGGTATCAATGCTT
TGTCGCAATACCAATTATGGTATCAATGCTTTGTTGCAATACCAATTACA
GTATCAATGCTTTGTTACAATACCAACTATGCTATCGATGTTTTGTTGCA
ATTTGAATTATGGTATCAATGCTTTGTTGCAATACCAACTGTAATATCAA
TGCTCTGTTACAATATCAATTATGGTATCAATGCTCTGTTGCAATATCAA
TTACGGTATCAATGCTTTGTTGCAATACCGACTATGGTATCAATGCTTTG
TTGCAATACATTATCTTCAGGTATAAGAGTTATTTTTAAAAACTTTTTTC
ATCCTTATTTTCTTAAAGCATCCCCGAAGAACCCTCTAGAAAGGCTCGAA
GGCATCAAAGACGAAAAACAATCATCTGGTTTTTCTCCCCCACAGGAAGT
CCTTTAGTCAAACTGGCATTCGAGGGTGGCAAACGACTAATTTTGTCCAA
AGATTGAAATCCAAAAAGAATGCCTAAAGAGATTCTCACAACAGATTTAT
AATCAAAGCCATTATTGATAAGTTTATTTCGACAGAAAATCTTTTAGTTT
CATTCTGATGACTATTCTTCGCTTTTCAGGATTTTTACGTATCAGCAAAA
TGCTGCAGATACAAATCCAACACATTACTTTTTGCCAATCAGGGGTGAAA
ATCTTTTTACCAAAGTCAAAAACAGACCAAATTAGAGAGGGGAATGCCGT
CTTCATCAGTGCNGGTGAAAATCTTTTTACCAAAGTCAAAACAGACCAAA
TTAGAGAGGGGAATACCGCCTTCATCAGTGCCAAAGGTTCTTATTACCCT
ATTTACTAGTTACAGAAATATATCAATCTTGCTAAATTTTCCCGACCAAA
CGATTATCTGTTTTGCCGACTCTTTAAGTGTAAGATTGGTCATTCGGCCA
TGGAAACCTACCAATTTCATACACCACAGCCAGAGACTCATTGAAGGGCC
ACTTAACCGGTATTTTTGAAGACAAGGCTAAGTATGGCTTGCATTCTCTT
CGTTCTGGGGTTACAGCCGAAGCAGCTAACAACGGTGTGTCAGATAGAAT
GATCTCAAAACATGGTCGCTGGTCGTCCAATACTAGTCGTGATACGTACA
TTAAAGANCCAACGATCGAAGAAAGGTGGAAATCGAGCTTCTCCGCGTTT
TTCGTACGAAAATCTACCATCTTGCGCAGATTGGAACAAACTGCGCATGT
GCAATATGCTTTAAAGAAGCTGCTTGTCAGCTTGTCCATCCTCGCTCTTG
CATACGCCTTGAACTAAGTTAAGTTTCACATTTAAGTTTACTGTTATGAC
ATTAATGCTATTTCTTTTTCTTACACGCTCCCGAACCTGGAAAACCCGTT
TATCAATGCTGGGCAACCATGACCCAACGATCAAGATGTTCTACTGGAGC
GATACCGGGACACAACTATCATTGAGACATACATTCGAATTACAGTTGCA
AAATACGTTACATTATAAAAATTCGACACTCTAACGTGGACATTTGAAAC
GATGAAAGAACTTTATACCAGAAACCAAACTATAAAATGTTTTGAATTTT
TTACGTTATATTTCACATTATAAAGTGGGAGGACCTTTAACCTCCGAAGG
TCGGCGTGACGGATGCCTTGGTCGGAGATAATGTTTCCTCCAGAATAAAC
AGCCACTGGGGGTTTTACGCTACATGCTTCGTCACAGTACAATTTAATTA
TTCCAAAGTTCT

Coding sequence (CDS) from alignment at sc0002147:17587..19348-

>TCONS_00039602 ID=TCONS_00039602|Name=TCONS_00039602|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0002147:17587..19348- (Clytia hemisphaerica)
ATTATGGTATCAATGCCCTGTTGCAATATCAATTATGGTATCAATGCTTT
GTCGCAATACCAATTATGGTATCAATGCTTTGTTGCAATACCAATTACAG
TATCAATGCTTTGTTACAATACCAACTATGCTATCGATGTTTTGTTGCAA
TTTGAATTATGGTATCAATGCTTTGTTGCAATACCAACTGTAATATCAAT
GCTCTGTTACAATATCAATTATGGTATCAATGCTCTGTTGCAATATCAAT
TACGGTATCAATGCTTTGTTGCAATACCGACTATGGTATCAATGCTTTGT
TGCAATACATTATCTTCAGGTATAAGAGTTATTTTTAAAAACTTTTTTCA
TCCTTATTTTCTTAAAGCATCCCCGAAGAACCCTCTAGAAAGGCTCGAAG
GCATCAAAGACGAAAAACAATCATCTGGTTTTTCTCCCCCACAGGAAGTC
CTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023919XLOC_023919Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039602-proteinTCONS_00039602-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039602-exon-sc0002147-1575043694:17587..19348TCONS_00039602-exon-sc0002147-1575043694:17587..19348Clytia hemisphaericaexon
TCONS_00039602-exon-sc0002147-1510915933:17587..19348TCONS_00039602-exon-sc0002147-1510915933:17587..19348Clytia hemisphaericaexon
TCONS_00039602-exon-sc0002147-1491911889:17587..19348TCONS_00039602-exon-sc0002147-1491911889:17587..19348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002147supercontigsc0002147:17587..19348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09071	1.46204	0.760774	0.938856	0.0968034	0.0875187	0.287801	0.363806	0.388483	0.383418	0.263637	0.352928	0.501958	0.160174	0.142045	0.168295	1.50419	1.00161	0.388514	0.136187	0.946811	0.518075	1.22299	1.52825	0.0916259	0.0777061	1.12081	0.805437	0.804475	0.907226
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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