TCONS_00039591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039591
Unique NameTCONS_00039591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039591 ID=TCONS_00039591|Name=TCONS_00039591|organism=Clytia hemisphaerica|type=transcript|length=796bp
TTCTGGTTACTTTTTAAGGTTTATAGTTGGATTTTTAATTAAGATATCGT
AAAGTTAGGTGGTAGGTTAGTAGGAATTGCAGGGTGAAATTCTTCTTCTT
TAGTGAGTGCAGTACGAGAGATTGTGATCGACACACCTCCACCAAAACGA
CCACTGACCAGAAAAAGATCGGCCAGCGTTGACAGTGGAAAACATAATCC
ATACAAAGTGAATATGAAGGATCCACCTCAAATCACTGTCAAAAACACAG
CAGTGGAAGACGAGTATGATGGCTCCACTGTTGCGTTGAACAGCATCAAT
GATGAAGTCAAATCAAGGCTCATCACTTTGCAAGTCTCCAAAGATCATCT
CTCATTATTCAGTATGGGAAGCAAGAAAGTTTTGTTTGAGAAGAggattc
aaaatatttcattttgtaCAAAGGGTGAATTGAGAAAAGATCACTTCGGA
TTCATCTGTCGTGAAGCTGGAAACCACATCTGTTATATTTTCCAAGGTGA
ATCAGAATATAAGGTTGATGAAATAATGAGTGCCATGAAGACAGCTTTTA
CAGAAGCACTCCAAGCTTCTGCTAATTCGACGCTCTGTGAGACATGCCCT
ATTCAAAACCTTCACAAACTTTGTAACAACCTTGAAGGTGTGACAACGAT
CGCAGAGAAAGATACAATGGTTCACGAAACCATCAAGATTTTGTCAGATT
ATGAACAGCTCCACGTCCTCAATGAAGTCAACGTAAGATTGAGATCGCTC
TTTCATTCGAAAATCATTTTGTACTTGTTTGAACTTACATACTGTG
Run BLAST on NCBI

protein sequence of TCONS_00039591-protein

>TCONS_00039591-protein ID=TCONS_00039591-protein|Name=TCONS_00039591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MKDPPQITVKNTAVEDEYDGSTVALNSINDEVKSRLITLQVSKDHLSLFS
MGSKKVLFEKRIQNISFCTKGELRKDHFGFICREAGNHICYIFQGESEYK
VDEIMSAMKTAFTEALQASANSTLCETCPIQNLHKLCNNLEGVTTIAEKD
TMVHETIKILSDYEQLHVLNEVNVRLRSLFHSKIILYLFELTYC
Run BLAST on NCBI

transcript from alignment at sc0002144:155..1551-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039591 ID=TCONS_00039591|Name=TCONS_00039591|organism=Clytia hemisphaerica|type=transcript|length=1397bp|location=Sequence derived from alignment at sc0002144:155..1551- (Clytia hemisphaerica)
TTCTGGTTACTTTTTAAGGTTTATAGTTGGATTTTTAATTAAGATATCGT
AAAGTTAGGTGGTAGGTTAGTAGGAATTGCAGGGTGAAATTCTTCTTCTT
TAGTGAGTGCAGTACGAGAGATTGTGATCGACACACCTCCACCAAAACGA
CCACTGACCAGAAAAAGATCGGCCAGCGTTGACAGTGGAAAACATAATCC
ATACAAAGTGAATATGAAGGATCCACCTCAAATCACTGTCAAAAACACAG
CAGTGGAAGACGAGTATGATGGCTCCACTGTTGCGTTGAACAGCATCAAT
GATGAAGTCAAATCAAGGCTCATCACTTTGCAAGTCTCCAAAGATCATCT
CTCATTATTCAGTATGGGAAGCAAGAAAGTTTTGTTTGAGAAGAGGATTC
AAAATATTTCATTTTGTACAAAGGTATTAAAGTATTTTATTGGTAGATGA
TGTCATAAGCGATCTGACATGTTTTTAAATCTTAACCTAATTGATTCTAC
AGTACAACAAACCAATGTCTAGTTTGATTTTATCCAATTTGACTTTTTTC
TAATCTTGTCATTCTTAAGGGTGAATTGAGAAAAGATCACTTCGGATTCA
TCTGTCGTGAAGCTGGAAACCACATCTGTTATATTTTCCAAGGTGAATCA
GAATATAAGGTGATTTTCTATTTTTATGCTCTTTATTTCTGTGAAATGAT
GCTGGGAAGATTATTTGTGATTAAAGTAGAAATTATCTGTTAACTTTCAA
GTTGTTAAACTTTTTAGTAATTTGTTTTGGTTTGACACTTTGACGTCTCT
ATAAATGGAGTTTTGCTATATGCAAAACTTTGACTTTTAATTTTGTAGGA
GGGATTTGATCCTGAAAATGAGACTGCTAAAGTGCTTTTAGAGTGACTTT
CCTTAAAAGCCCTTGGGGAAATTTTAACGGAGCTTTTACGGAGGTAATTT
CCACACAATGGCAATTTGACTACTCCTCGCATAGTTCAAGAGTTTGATTG
ATATTTTTTCGTTCTTTAGGTTGATGAAATAATGAGTGCCATGAAGACAG
CTTTTACAGAAGCACTCCAAGCTTCTGCTAATTCGACGCTCTGTGAGACA
TGCCCTATTCAAAACCTTCACAAACTTTGTAACAACCTTGAAGGTAAGCT
TATAGTTGAAGTGTTGTAGTAAATTTATCTTTTTGAAATTTTTTTAGACT
CTACAAAACAATGTTTTCCGATCTTTTCTGATCATTAGGTGTGACAACGA
TCGCAGAGAAAGATACAATGGTTCACGAAACCATCAAGATTTTGTCAGAT
TATGAACAGCTCCACGTCCTCAATGAAGTCAACGTAAGATTGAGATCGCT
CTTTCATTCGAAAATCATTTTGTACTTGTTTGAACTTACATACTGTG

Coding sequence (CDS) from alignment at sc0002144:155..1551-

>TCONS_00039591 ID=TCONS_00039591|Name=TCONS_00039591|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at sc0002144:155..1551- (Clytia hemisphaerica)
GTGTGACAACGATCGCAGAGAAAGATACAATGGTTCACGAAACCATCAAG
ATTTTGTCAGATTATGAACAGCTCCACGTCCTCAATGAAGTCAACGTAAG
ATTGAGATCGCTCTTTCATTCGAAAATCATTTTGTACTTGTTTGAACTTA
CATACTGTGTTGATGAAATAATGAGTGCCATGAAGACAGCTTTTACAGAA
GCACTCCAAGCTTCTGCTAATTCGACGCTCTGTGAGACATGCCCTATTCA
AAACCTTCACAAACTTTGTAACAACCTTGAAGGGTGAATTGAGAAAAGAT
CACTTCGGATTCATCTGTCGTGAAGCTGGAAACCACATCTGTTATATTTT
CCAAGGTGAATCAGAATATAAGATGAAGGATCCACCTCAAATCACTGTCA
AAAACACAGCAGTGGAAGACGAGTATGATGGCTCCACTGTTGCGTTGAAC
AGCATCAATGATGAAGTCAAATCAAGGCTCATCACTTTGCAAGTCTCCAA
AGATCATCTCTCATTATTCAGTATGGGAAGCAAGAAAGTTTTGTTTGAGA
AGAGGATTCAAAATATTTCATTTTGTACAAAGGTGTGACAACGATCGCAG
AGAAAGATACAATGGTTCACGAAACCATCAAGATTTTGTCAGATTATGAA
CAGCTCCACGTCCTCAATGAAGTCAACGTAAGATTGAGATCGCTCTTTCA
TTCGAAAATCATTTTGTACTTGTTTGAACTTACATACTGTGTTGATGAAA
TAATGAGTGCCATGAAGACAGCTTTTACAGAAGCACTCCAAGCTTCTGCT
AATTCGACGCTCTGTGAGACATGCCCTATTCAAAACCTTCACAAACTTTG
TAACAACCTTGAAGGGTGAATTGAGAAAAGATCACTTCGGATTCATCTGT
CGTGAAGCTGGAAACCACATCTGTTATATTTTCCAAGGTGAATCAGAATA
TAAGATGAAGGATCCACCTCAAATCACTGTCAAAAACACAGCAGTGGAAG
ACGAGTATGATGGCTCCACTGTTGCGTTGAACAGCATCAATGATGAAGTC
AAATCAAGGCTCATCACTTTGCAAGTCTCCAAAGATCATCTCTCATTATT
CAGTATGGGAAGCAAGAAAGTTTTGTTTGAGAAGAGGATTCAAAATATTT
CATTTTGTACAAAGGTGTGACAACGATCGCAGAGAAAGATACAATGGTTC
ACGAAACCATCAAGATTTTGTCAGATTATGAACAGCTCCACGTCCTCAAT
GAAGTCAACGTAAGATTGAGATCGCTCTTTCATTCGAAAATCATTTTGTA
CTTGTTTGAACTTACATACTGTGTTGATGAAATAATGAGTGCCATGAAGA
CAGCTTTTACAGAAGCACTCCAAGCTTCTGCTAATTCGACGCTCTGTGAG
ACATGCCCTATTCAAAACCTTCACAAACTTTGTAACAACCTTGAAGGGTG
AATTGAGAAAAGATCACTTCGGATTCATCTGTCGTGAAGCTGGAAACCAC
ATCTGTTATATTTTCCAAGGTGAATCAGAATATAAGATGAAGGATCCACC
TCAAATCACTGTCAAAAACACAGCAGTGGAAGACGAGTATGATGGCTCCA
CTGTTGCGTTGAACAGCATCAATGATGAAGTCAAATCAAGGCTCATCACT
TTGCAAGTCTCCAAAGATCATCTCTCATTATTCAGTATGGGAAGCAAGAA
AGTTTTGTTTGAGAAGAGGATTCAAAATATTTCATTTTGTACAAAGGTGT
GACAACGATCGCAGAGAAAGATACAATGGTTCACGAAACCATCAAGATTT
TGTCAGATTATGAACAGCTCCACGTCCTCAATGAAGTCAACGTAAGATTG
AGATCGCTCTTTCATTCGAAAATCATTTTGTACTTGTTTGAACTTACATA
CTGTGTTGATGAAATAATGAGTGCCATGAAGACAGCTTTTACAGAAGCAC
TCCAAGCTTCTGCTAATTCGACGCTCTGTGAGACATGCCCTATTCAAAAC
CTTCACAAACTTTGTAACAACCTTGAAGGGTGAATTGAGAAAAGATCACT
TCGGATTCATCTGTCGTGAAGCTGGAAACCACATCTGTTATATTTTCCAA
GGTGAATCAGAATATAAGATGAAGGATCCACCTCAAATCACTGTCAAAAA
CACAGCAGTGGAAGACGAGTATGATGGCTCCACTGTTGCGTTGAACAGCA
TCAATGATGAAGTCAAATCAAGGCTCATCACTTTGCAAGTCTCCAAAGAT
CATCTCTCATTATTCAGTATGGGAAGCAAGAAAGTTTTGTTTGAGAAGAG
GATTCAAAATATTTCATTTTGTACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023908XLOC_023908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039591-exon-sc0002144-1575043694:1129..1551TCONS_00039591-exon-sc0002144-1575043694:1129..1551Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1575043694:893..982TCONS_00039591-exon-sc0002144-1575043694:893..982Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1575043694:409..532TCONS_00039591-exon-sc0002144-1575043694:409..532Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1575043694:155..313TCONS_00039591-exon-sc0002144-1575043694:155..313Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1510915933:1129..1551TCONS_00039591-exon-sc0002144-1510915933:1129..1551Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1510915933:893..982TCONS_00039591-exon-sc0002144-1510915933:893..982Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1510915933:409..532TCONS_00039591-exon-sc0002144-1510915933:409..532Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1510915933:155..313TCONS_00039591-exon-sc0002144-1510915933:155..313Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1491911889:1129..1551TCONS_00039591-exon-sc0002144-1491911889:1129..1551Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1491911889:893..982TCONS_00039591-exon-sc0002144-1491911889:893..982Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1491911889:409..532TCONS_00039591-exon-sc0002144-1491911889:409..532Clytia hemisphaericaexon
TCONS_00039591-exon-sc0002144-1491911889:155..313TCONS_00039591-exon-sc0002144-1491911889:155..313Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039591-proteinTCONS_00039591-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002144supercontigsc0002144:155..1551 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.64274	4.61963	2.12544	1.63618	5.95684	5.32945	5.3432	6.13864	5.2242	6.86253	6.23752	3.98046	5.4392	4.08031	7.76093	7.98744	9.25779	7.46085	3.1841	5.08511	5.30659	5.6036	6.31599	7.16144	12.8352	11.7903	6.81849	4.2813	18.3827	22.9785
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006020PTB/PI_dom
IPR011993PH_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00039591 vs. Swiss-Prot (Human)
Match: TBCD4 (TBC1 domain family member 4 OS=Homo sapiens GN=TBC1D4 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.215e-25
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1 
Query:  298 NDEVKSRLITLQVSKDHLSLFSMGSKKVLFEKRIQNISFCTKGELRKDHFGFICREA-----GNHICYIFQGESEYKVDEIMSAMKTAFTEALQASANST---LCETCPIQNLHKLCNNLEGVTTIAEKDTMVHETIKILSDYEQLHVLNEVN 732
            +D  K+R +  QV +  ++L S  +K V+ EK  ++IS C++G    DHFGFICRE+       +ICY+FQ  SE  VDE+M  +K AF+ A    +  T   LCE CP+ +LHKLC  +EG+     K  ++   +  L+D EQ  +   V 
Sbjct:  349 SDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAK-LVIQRHLSSLTDNEQADIFERVQ 500
The following BLAST results are available for this feature:
BLAST of TCONS_00039591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBCD44.215e-2537.91TBC1 domain family member 4 OS=Homo sapiens GN=TBC... [more]
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