TCONS_00039574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039574
Unique NameTCONS_00039574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039574 ID=TCONS_00039574|Name=TCONS_00039574|organism=Clytia hemisphaerica|type=transcript|length=558bp
TCTTCTTGTACATCACAAGATCAAATAAAGTATTCCGACGTAAACAATTT
AGAGCCGTCATTTTTTAACTTAAACACtgctttaaatcttttttaaataa
tttcaattcttttacaGTACTGTATCTTTCTTCTATCTTAGagtattttg
tataaaaaatgaaCGAGTTTGAAGAGataaagataaaaattgaaCAAGAA
GAAGATCATGGATGTGATGAAACGAATCAAGAACATTTGGAAATTGTAAT
CAAACTGGAAGATGAATCAATTGGATATGAAGATGCCGAAAATTTTGAAC
CAATTAAAAACCATGAAAGTGAACTATCCGAAGAAACTAACCcacaaaat
tatgaaattagcATTAAACTTGAAGATGAGTCAAAACCTCAAGATAATCA
AAGTACTAaatcaatgcaatttttggaaaatcgaaATTCAGAAAATCTTA
ACGATGGAACAAATTGTTTTGATCAGTTTTCGCCGACTGCAGGAATGAGT
TCACAGATCAGGGAGGAAATCACTATTAAATTTGAAGATGAATTGTTTCA
AAACTATG
Run BLAST on NCBI

transcript from alignment at sc0002143:25213..25770+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039574 ID=TCONS_00039574|Name=TCONS_00039574|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0002143:25213..25770+ (Clytia hemisphaerica)
TCTTCTTGTACATCACAAGATCAAATAAAGTATTCCGACGTAAACAATTT
AGAGCCGTCATTTTTTAACTTAAACACtgctttaaatcttttttaaataa
tttcaattcttttacaGTACTGTATCTTTCTTCTATCTTAGagtattttg
tataaaaaatgaaCGAGTTTGAAGAGataaagataaaaattgaaCAAGAA
GAAGATCATGGATGTGATGAAACGAATCAAGAACATTTGGAAATTGTAAT
CAAACTGGAAGATGAATCAATTGGATATGAAGATGCCGAAAATTTTGAAC
CAATTAAAAACCATGAAAGTGAACTATCCGAAGAAACTAACCcacaaaat
tatgaaattagcATTAAACTTGAAGATGAGTCAAAACCTCAAGATAATCA
AAGTACTAaatcaatgcaatttttggaaaatcgaaATTCAGAAAATCTTA
ACGATGGAACAAATTGTTTTGATCAGTTTTCGCCGACTGCAGGAATGAGT
TCACAGATCAGGGAGGAAATCACTATTAAATTTGAAGATGAATTGTTTCA
AAACTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023898XLOC_023898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039574-exon-sc0002143-1491911889:25213..25770TCONS_00039574-exon-sc0002143-1491911889:25213..25770Clytia hemisphaericaexon
TCONS_00039574-exon-sc0002143-1510915933:25213..25770TCONS_00039574-exon-sc0002143-1510915933:25213..25770Clytia hemisphaericaexon
TCONS_00039574-exon-sc0002143-1575043694:25213..25770TCONS_00039574-exon-sc0002143-1575043694:25213..25770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002143supercontigsc0002143:25213..25770 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8776	8.22287	4.81676	6.13468	5.75541	7.59494	9.50378	10.0938	0.740918	1.65459	2.73932	0.275993	0.821058	0.806106	0.872787	0.816288	1.07857	0.509315	0	0	1.04811	0.438648	3.5763	6.0057	4.88116	4.73777	0.853408	0.460911	2.18937	3.71844
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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