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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039573 ID=TCONS_00039573|Name=TCONS_00039573|organism=Clytia hemisphaerica|type=transcript|length=864bpRun BLAST on NCBI transcript from alignment at sc0002143:14080..27799+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039573 ID=TCONS_00039573|Name=TCONS_00039573|organism=Clytia hemisphaerica|type=transcript|length=13720bp|location=Sequence derived from alignment at sc0002143:14080..27799+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039573 vs. Swiss-Prot (Human)
Match: ZN33A (Zinc finger protein 33A OS=Homo sapiens GN=ZNF33A PE=1 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 7.582e-42 Identity = 96/213 (45.07%), Postives = 126/213 (59.15%), Query Frame = 3
Query: 3 VHQGIKAFKCQDCGKCFVDKTNLTSHQIAVHQLGIKAFNCQEYGKSFATK*SLAMHQVTVHEGINPFECQECGKSFGSKSNLTSHQRTVHQGIKAFKCRECCESFASKRNLERHQVTVHQGIKAFECQECGKSFGEKSNLTMHQRTVHLD*KAFKCQ*SKLNLLLQRFIFKNPKELSMIKPFECQNYGNSFAEKGSL*KHQRKAHDKI*PFQC 641
VH G K F+C +C K F DK+NLT HQ + G K F C E GK+F+ K +L +HQ T H G P++C CGK+F KS+LT HQRT H G+K ++C EC +SF +L+ HQ T H G K FEC ECGKSF EKSNLT HQR +H+ K+++C + + ++ + KP+EC G +F K L HQR H PF C
Sbjct: 349 VHTGQKPFQCNECEKAFWDKSNLTKHQRS--HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRT-HTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRHQIIHTGWKPYECYECGKTFCLKSDLTVHQR-THTGQKPFAC 554 HSP 2 Score: 136.346 bits (342), Expect = 2.195e-35 Identity = 91/219 (41.55%), Postives = 125/219 (57.08%), Query Frame = 3
Query: 3 VHQGIKAFKCQDCGKCFVDKTNLTSHQIAVHQLGIKAFNCQEYGKSFATK*SLAMHQVTVHEGINPFECQECGKSFGSKSNLTSHQRTVHQGIKAFKCRECCESFASKRNLERHQVTVHQGIKAFECQECGKSFGEKSNLTMHQRTVHLD*KAFKCQ*SKLNLLLQRFIFKNPKELSMIKPFECQNYGNSFAEKGSL*KHQRKAHDKI*PFQCHGRGQS 659
H G K F+C +CGK F +K+NLT HQ +H +G K++ C GK+F K L HQ+ +H G P+EC ECGK+F KS+LT HQRT H G K F C EC + F+ K L +H T H G K +EC ECGK F KS LT H RT H K ++C + + ++ + KP++C G +F K +L HQR H + P++C+ G+S
Sbjct: 461 THTGEKPFECLECGKSFSEKSNLTQHQ-RIH-IGDKSYECNACGKTFYHKSLLTRHQI-IHTGWKPYECYECGKTFCLKSDLTVHQRT-HTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKAFYQKSQLTQHQRIHIGEKPYKCNECGKAFCHKSALIVHQR-THTQEKPYKCNECGKS 672 HSP 3 Score: 123.25 bits (308), Expect = 7.085e-31 Identity = 87/218 (39.91%), Postives = 120/218 (55.05%), Query Frame = 3
Query: 12 GIKAFKCQDCGKCFVDKTNLTSHQIAVHQLGIKAFNCQEYGKSFATK*SLAMHQVTVHEGINPFECQECGKSFGSKSNLTSHQRTVHQGIKAFKCRECCESFASKRNLERHQVTVHQGIKAFECQECGKSFGEKSNLTMHQRTVHLD*KAFKCQ*SKLNLLLQRFIFKNPKELSMIKPFECQNYGNSFAEKGSL*KHQRKAHDKI*PFQCHGRGQSVY 665
+K + C + G F K L+ Q G K F C E GK+F K L HQ VH G PF+C EC K+F KSNLT HQR+ H G K F+C EC ++F+ K L HQ T H G K ++C CGK+F +KS+LT HQRT H K ++C + + + + + + KPFEC G SF+EK +L +HQR H ++C+ G++ Y
Sbjct: 296 SMKHYDCGESGNNFRRKLCLSHLQKG--DKGEKHFECNECGKAFWEKSHLTRHQ-RVHTGQKPFQCNECEKAFWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRTHTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFY 506 HSP 4 Score: 117.857 bits (294), Expect = 4.902e-29 Identity = 79/203 (38.92%), Postives = 110/203 (54.19%), Query Frame = 3
Query: 3 VHQGIKAFKCQDCGKCFVDKTNLTSHQIAVHQLGIKAFNCQEYGKSFATK*SLAMHQVTVHEGINPFECQECGKSFGSKSNLTSHQRTVHQGIKAFKCRECCESFASKRNLERHQVTVHQGIKAFECQECGKSFGEKSNLTMHQRTVHLD*KAFKCQ*SKLNLLLQRFIFKNPKELSMIKPFECQNYGNSFAEKGSL*KHQRK 611
H G K ++C +CGK F +K+ LT H G K + C E GK+F K L HQ +H G P++C ECGK+F KS L HQRT H K +KC EC +SF K L H+ H G K +EC ECGK F KS+LT+H R H K+ +C + + ++ + + KP+EC +F++K +L HQR+
Sbjct: 573 THTGEKPYECHECGKIFYNKSYLTKHNRT--HTGEKPYECNECGKAFYQKSQLTQHQ-RIHIGEKPYKCNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLIFHERK-HTGEKPYECNECGKFFRHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSELAQHQRSHTGEKPYECNTCRKTFSQKSNLIVHQRR 769 The following BLAST results are available for this feature:
BLAST of TCONS_00039573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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