TCONS_00039567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039567
Unique NameTCONS_00039567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039567 ID=TCONS_00039567|Name=TCONS_00039567|organism=Clytia hemisphaerica|type=transcript|length=1513bp
attttgtataaaaaatgaaCGGGtttgaagaaataaaaataaaaattgaa
caaGAAGAAATTCATGGTTGTGATGAAACGAATCATGAACATTTGGAAAT
TGTTATCAAACTGGAAGATGAATCAATTGGATATGAAGGCGACGAAAATA
TGGAACCATTTAAAAACCATGAAagtgaactttttaaaaattcttgtaga
aatgtAAAGGGGAACGATGTTACATCACCCGAAGAAACTGACcccaaaaa
ttatgaaattagcATTAAACTTGAAGATGAGTCAAAACTTCAAGATAATC
AAAGTGCTAAATCAATGCAATTTTCGGAAAATCGAAATTCAGAAAATCTT
AACGATGgaacaaattattttgattagtTTTCACCGACTGCAGAAATGAA
TTCACAGATCAGGGAGGAAATCACTTTTCAATTTGAAGATGAGTTGCAAA
GGTTTCAAAACTATGAAAATGATAATTCACAGGAATTCTTTAAGGCTGAT
AAGATTGAAAATTCTAATAATGACCATTTGACAGGTGCAGATGGTTTTGA
TTACGATCAAAGTATTAAACCTTTCAAGTGTAATGAATGTGGTGAACGAT
TTTACCAAGAAAGCACTCAAACTCGACACAAAAGGATCCATAAAGAATGT
AGGTATAGATGCAAACAATGTGATAAATGTTATAATAGTAAAAATAATCT
TATTCaacatcaaaaagattttcatgaAGGTTTGAGACCCTTCAAGTGTG
ACGAGTGCCATAAAGCCTTTAGTCGCAAAAATTACTTAACAATCCATAAA
AGAACAGTTCATGAAGGTATAAAGGCATttgaatgtcaagaatgtggtaa
atcatttggaaaaaaaatcggccCTAACCTCGCATAAAAGAACTGTTCAT
GAAGGCATAAAGCCTTTTAATTGTCaagagtgtggtaaatcttttggaCT
TAAGACGGCCTTAACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAAGG
CCTtcaaatgtcaagaatgtggtaaatcttttggaCACAAGACGACCTTA
ACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTTCAAATGCCA
AGAATGTCGTAAATGTTTTTCTACAAAGAGTTCTTTGAAAAGGCATCAAA
GAAAAGTCCATGATAAAGCCTTTTGAGCGTCAGAAATATGGAAAAAGAAT
TGAGAGAAAGGTTCGTTAAAGAAACatgaaagaataaataaatgaataaa
tttcATTGATGTGAAATGTCATTGAtgtgttgattttttttcactttaat
cCACAGACACGTCGAAAGGAAGTTCAAGAAGAGATTGAATGTTTCAATGT
GTGAAAAGTGTTGCAAATTTAATTGAAGATAAACAAGGAGCGCAGGCTAT
TAGCGATGGGAGAATTTTATTAtctttaaatataaaaacttcAACGAATC
TTGTCATTGATAACGAGCTACTGAGCCTTCAACGGCACTTTCTACGggaa
aattgaaacaaat
Run BLAST on NCBI

transcript from alignment at sc0002143:9280..10792+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039567 ID=TCONS_00039567|Name=TCONS_00039567|organism=Clytia hemisphaerica|type=transcript|length=1513bp|location=Sequence derived from alignment at sc0002143:9280..10792+ (Clytia hemisphaerica)
attttgtataaaaaatgaaCGGGtttgaagaaataaaaataaaaattgaa caaGAAGAAATTCATGGTTGTGATGAAACGAATCATGAACATTTGGAAAT TGTTATCAAACTGGAAGATGAATCAATTGGATATGAAGGCGACGAAAATA TGGAACCATTTAAAAACCATGAAagtgaactttttaaaaattcttgtaga aatgtAAAGGGGAACGATGTTACATCACCCGAAGAAACTGACcccaaaaa ttatgaaattagcATTAAACTTGAAGATGAGTCAAAACTTCAAGATAATC AAAGTGCTAAATCAATGCAATTTTCGGAAAATCGAAATTCAGAAAATCTT AACGATGgaacaaattattttgattagtTTTCACCGACTGCAGAAATGAA TTCACAGATCAGGGAGGAAATCACTTTTCAATTTGAAGATGAGTTGCAAA GGTTTCAAAACTATGAAAATGATAATTCACAGGAATTCTTTAAGGCTGAT AAGATTGAAAATTCTAATAATGACCATTTGACAGGTGCAGATGGTTTTGA TTACGATCAAAGTATTAAACCTTTCAAGTGTAATGAATGTGGTGAACGAT TTTACCAAGAAAGCACTCAAACTCGACACAAAAGGATCCATAAAGAATGT AGGTATAGATGCAAACAATGTGATAAATGTTATAATAGTAAAAATAATCT TATTCaacatcaaaaagattttcatgaAGGTTTGAGACCCTTCAAGTGTG ACGAGTGCCATAAAGCCTTTAGTCGCAAAAATTACTTAACAATCCATAAA AGAACAGTTCATGAAGGTATAAAGGCATttgaatgtcaagaatgtggtaa atcatttggaaaaaaaatcggccCTAACCTCGCATAAAAGAACTGTTCAT GAAGGCATAAAGCCTTTTAATTGTCaagagtgtggtaaatcttttggaCT TAAGACGGCCTTAACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAAGG CCTtcaaatgtcaagaatgtggtaaatcttttggaCACAAGACGACCTTA ACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAAGGCCTTCAAATGCCA AGAATGTCGTAAATGTTTTTCTACAAAGAGTTCTTTGAAAAGGCATCAAA GAAAAGTCCATGATAAAGCCTTTTGAGCGTCAGAAATATGGAAAAAGAAT TGAGAGAAAGGTTCGTTAAAGAAACatgaaagaataaataaatgaataaa tttcATTGATGTGAAATGTCATTGAtgtgttgattttttttcactttaat cCACAGACACGTCGAAAGGAAGTTCAAGAAGAGATTGAATGTTTCAATGT GTGAAAAGTGTTGCAAATTTAATTGAAGATAAACAAGGAGCGCAGGCTAT TAGCGATGGGAGAATTTTATTAtctttaaatataaaaacttcAACGAATC TTGTCATTGATAACGAGCTACTGAGCCTTCAACGGCACTTTCTACGggaa aattgaaacaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023898XLOC_023898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039567-exon-sc0002143-1491911889:9280..10792TCONS_00039567-exon-sc0002143-1491911889:9280..10792Clytia hemisphaericaexon
TCONS_00039567-exon-sc0002143-1510915933:9280..10792TCONS_00039567-exon-sc0002143-1510915933:9280..10792Clytia hemisphaericaexon
TCONS_00039567-exon-sc0002143-1575043694:9280..10792TCONS_00039567-exon-sc0002143-1575043694:9280..10792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002143supercontigsc0002143:9280..10792 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.09121 4.38862 1.56165 1.66195 2.77366 2.28169 2.84618 2.72728 1.25238 1.07264 0.590876 1.2994 0.81602 0.758563 1.02188 1.33086 1.73034 1.20034 0.396432 0.276747 1.0227 1.39328 4.14529 4.77785 0.352839 0.355929 1.00458 0.566294 1.49045 2.41593
Blast
BLAST of TCONS_00039567 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.915e-42
Identity = 51/105 (48.57%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  555 DQSIKPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
            D+  K F+CNECG+ F+++S  TRH+R+H  E  ++C QC K +  K+NL +HQ+  H G +PF+C+EC KAFS K+ LT+H+RT H G K ++C  CGK+F +K
Sbjct:  323 DKGEKHFECNECGKAFWEKSHLTRHQRVHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQK 425          

HSP 2 Score: 94.7449 bits (234), Expect = 2.915e-42
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  868 SALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHER 1233
            S LT H+RT H G KPF C ECGKSF  K+ LT HQRT H G K ++C  CGK+F HK+ LT HQ  +H G+K ++C EC K F  KS L  HQR    +K F   E  K    K +L +H R
Sbjct:  454 SHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYR 573          

HSP 3 Score: 103.219 bits (256), Expect = 8.596e-41
Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query:  865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHERI 1236
            KS LT H + +H G+KP+ C ECGK+F LK+ LT HQRT H G K F C ECGK F HK+TL+ H RT H G K ++C EC K F  KS L +H R    +K +  +E  K   +K  L +H+RI
Sbjct:  509 KSVLTRH-QIIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRI 630          

HSP 4 Score: 83.1889 bits (204), Expect = 8.596e-41
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  567 KPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSF 857
            KP++CN CG+ FYQ+S  T+H+R H  +  Y C +C K +   ++L  HQ+  H G +PF+C EC K+F +K++LT H+RT H G K +EC  CGK+F
Sbjct:  411 KPYQCNACGKTFYQKSDLTKHQRTHTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTF 506          

HSP 5 Score: 95.1301 bits (235), Expect = 3.300e-38
Identity = 61/124 (49.19%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHER 1233
            KS LT H RT H G KP+ C ECGK+F  K+ LT HQR +H G K ++C ECGK+F HK+ L  HQRT H   K +KC EC K F  KS L  H+RK   +K +  +E  K    K SL  H R
Sbjct:  593 KSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHR 713          

HSP 6 Score: 82.8037 bits (203), Expect = 3.300e-38
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  567 KPFKCNECGERFYQESTQTRHKRIH-KECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
            KPF+C ECG+ F Q+S  T+H+R H  +  Y C  C K +  K+ L +HQ   H GL+P++C EC K F  K+ LTIH+RT H G K F C ECGK F  K
Sbjct:  467 KPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHK 565          

HSP 7 Score: 89.3521 bits (220), Expect = 8.150e-36
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQR 1152
            KSAL  H+RT H   KP+ C ECGKSF +K+ L  H+R  H G K ++C ECGKSF HK++LT H R  H G K+ +C EC K F  KS L +HQR
Sbjct:  649 KSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQR 741          

HSP 8 Score: 80.1073 bits (196), Expect = 8.150e-36
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  564 IKPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
            +KP++C ECG+ F  +S  T H+R H  E  + C +C K ++ K+ L QH +  H G +P++C EC K F  K+YLT H RT H G K +EC ECGK+F +K
Sbjct:  522 LKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQK 621          

HSP 9 Score: 86.2705 bits (212), Expect = 5.876e-28
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  567 KPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKKIGPNL 881
            KP++C+ECG+ FY +S  T+H R H  E  Y C +C K +  K+ L QHQ+  H G +P++C+EC KAF  K+ L +H+RT H   K ++C ECGKSF  K G  L
Sbjct:  579 KPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLIL 682          

HSP 10 Score: 56.9954 bits (136), Expect = 5.876e-28
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFK 1095
            KS+LT H R  H G K   C ECGK F  K+ L  HQR+ H G K ++C  C K+F  K+ L  HQRT H G K ++
Sbjct:  705 KSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT-HIGEKPYE 778          

HSP 11 Score: 86.2705 bits (212), Expect = 1.794e-22
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  567 KPFKCNECGERFYQESTQTRHKRIH-KECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
            KP++CNECG+ F Q+S  T+H+RIH  E  Y C +C K +  K+ LI HQ+  H   +P+KC+EC K+F  K+ L +H+R  H G K +EC ECGKSF  K
Sbjct:  607 KPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHK 705          

HSP 12 Score: 38.5058 bits (88), Expect = 1.794e-22
Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  862 KKSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFK 1008
            +KS L  H+R+ H G KP+ C  C K+F  K+ L  HQRT H G K ++
Sbjct:  732 RKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT-HIGEKPYE 778          

HSP 13 Score: 95.5153 bits (236), Expect = 1.428e-20
Identity = 68/150 (45.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHERINK*INFIDVKCH*CVDFFSL*STDT 1311
            KSALT H+RT H G KP+ C  CGK+F  K+ LT HQRT H G K ++C ECGKSF   + LT HQRT H G K F+C EC K F  KS L +HQR  + DK +  +   K    K  L +H+ I+        +C+ C   F L S  T
Sbjct:  397 KSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQIIH--TGLKPYECYECGKTFCLKSDLT 541          

HSP 14 Score: 92.4337 bits (228), Expect = 1.313e-19
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  862 KKSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQR 1152
            +KS LT H+R VH G K F C +CGK+F  K+ LT HQR+ H G K F+C ECGK+F HK+ LT HQRT H G K ++C  C K F  KS L +HQR
Sbjct:  340 EKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQR 433          

HSP 15 Score: 82.8037 bits (203), Expect = 1.547e-16
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  567 KPFKCNECGERFYQESTQTRHKRIH-KECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
            KP++CNECG+ F  +S    H+R H +E  Y+C +C K +  K+ LI H++  H G +P++C+EC K+FS K+ LT+H R  H G K+ +C ECGK F +K
Sbjct:  635 KPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRK 733          

HSP 16 Score: 80.8777 bits (198), Expect = 6.051e-16
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  567 KPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSF 857
            K F+CN+CG+ F+++S  T+H+R H  E  + C +C K ++ K+ L  HQ+  H G +P++C+ C K F +K+ LT H+RT H G K +EC ECGKSF
Sbjct:  355 KHFQCNQCGKTFWEKSNLTKHQRSHTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSF 450          
The following BLAST results are available for this feature:
BLAST of TCONS_00039567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN33B2.915e-4248.57Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B ... [more]
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