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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039567 ID=TCONS_00039567|Name=TCONS_00039567|organism=Clytia hemisphaerica|type=transcript|length=1513bpRun BLAST on NCBI transcript from alignment at sc0002143:9280..10792+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039567 ID=TCONS_00039567|Name=TCONS_00039567|organism=Clytia hemisphaerica|type=transcript|length=1513bp|location=Sequence derived from alignment at sc0002143:9280..10792+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039567 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 2.915e-42 Identity = 51/105 (48.57%), Postives = 75/105 (71.43%), Query Frame = 3
Query: 555 DQSIKPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
D+ K F+CNECG+ F+++S TRH+R+H E ++C QC K + K+NL +HQ+ H G +PF+C+EC KAFS K+ LT+H+RT H G K ++C CGK+F +K
Sbjct: 323 DKGEKHFECNECGKAFWEKSHLTRHQRVHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQK 425 HSP 2 Score: 94.7449 bits (234), Expect = 2.915e-42 Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 868 SALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHER 1233
S LT H+RT H G KPF C ECGKSF K+ LT HQRT H G K ++C CGK+F HK+ LT HQ +H G+K ++C EC K F KS L HQR +K F E K K +L +H R
Sbjct: 454 SHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYR 573 HSP 3 Score: 103.219 bits (256), Expect = 8.596e-41 Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHERI 1236
KS LT H + +H G+KP+ C ECGK+F LK+ LT HQRT H G K F C ECGK F HK+TL+ H RT H G K ++C EC K F KS L +H R +K + +E K +K L +H+RI
Sbjct: 509 KSVLTRH-QIIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQRI 630 HSP 4 Score: 83.1889 bits (204), Expect = 8.596e-41 Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 3
Query: 567 KPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSF 857
KP++CN CG+ FYQ+S T+H+R H + Y C +C K + ++L HQ+ H G +PF+C EC K+F +K++LT H+RT H G K +EC CGK+F
Sbjct: 411 KPYQCNACGKTFYQKSDLTKHQRTHTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTF 506 HSP 5 Score: 95.1301 bits (235), Expect = 3.300e-38 Identity = 61/124 (49.19%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHER 1233
KS LT H RT H G KP+ C ECGK+F K+ LT HQR +H G K ++C ECGK+F HK+ L HQRT H K +KC EC K F KS L H+RK +K + +E K K SL H R
Sbjct: 593 KSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERKHTGEKPYECNECGKSFSHKSSLTVHHR 713 HSP 6 Score: 82.8037 bits (203), Expect = 3.300e-38 Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 3
Query: 567 KPFKCNECGERFYQESTQTRHKRIH-KECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
KPF+C ECG+ F Q+S T+H+R H + Y C C K + K+ L +HQ H GL+P++C EC K F K+ LTIH+RT H G K F C ECGK F K
Sbjct: 467 KPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHK 565 HSP 7 Score: 89.3521 bits (220), Expect = 8.150e-36 Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQR 1152
KSAL H+RT H KP+ C ECGKSF +K+ L H+R H G K ++C ECGKSF HK++LT H R H G K+ +C EC K F KS L +HQR
Sbjct: 649 KSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQR 741 HSP 8 Score: 80.1073 bits (196), Expect = 8.150e-36 Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 3
Query: 564 IKPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
+KP++C ECG+ F +S T H+R H E + C +C K ++ K+ L QH + H G +P++C EC K F K+YLT H RT H G K +EC ECGK+F +K
Sbjct: 522 LKPYECYECGKTFCLKSDLTIHQRTHTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQK 621 HSP 9 Score: 86.2705 bits (212), Expect = 5.876e-28 Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 3
Query: 567 KPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKKIGPNL 881
KP++C+ECG+ FY +S T+H R H E Y C +C K + K+ L QHQ+ H G +P++C+EC KAF K+ L +H+RT H K ++C ECGKSF K G L
Sbjct: 579 KPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLIL 682 HSP 10 Score: 56.9954 bits (136), Expect = 5.876e-28 Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFK 1095
KS+LT H R H G K C ECGK F K+ L HQR+ H G K ++C C K+F K+ L HQRT H G K ++
Sbjct: 705 KSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT-HIGEKPYE 778 HSP 11 Score: 86.2705 bits (212), Expect = 1.794e-22 Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3
Query: 567 KPFKCNECGERFYQESTQTRHKRIH-KECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
KP++CNECG+ F Q+S T+H+RIH E Y C +C K + K+ LI HQ+ H +P+KC+EC K+F K+ L +H+R H G K +EC ECGKSF K
Sbjct: 607 KPYECNECGKTFCQKSQLTQHQRIHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHK 705 HSP 12 Score: 38.5058 bits (88), Expect = 1.794e-22 Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 1
Query: 862 KKSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFK 1008
+KS L H+R+ H G KP+ C C K+F K+ L HQRT H G K ++
Sbjct: 732 RKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT-HIGEKPYE 778 HSP 13 Score: 95.5153 bits (236), Expect = 1.428e-20 Identity = 68/150 (45.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query: 865 KSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQRK-VHDKAF*ASEIWKKN*EKGSLKKHERINK*INFIDVKCH*CVDFFSL*STDT 1311
KSALT H+RT H G KP+ C CGK+F K+ LT HQRT H G K ++C ECGKSF + LT HQRT H G K F+C EC K F KS L +HQR + DK + + K K L +H+ I+ +C+ C F L S T
Sbjct: 397 KSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRHQIIH--TGLKPYECYECGKTFCLKSDLT 541 HSP 14 Score: 92.4337 bits (228), Expect = 1.313e-19 Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 862 KKSALTSHKRTVHEGIKPFNCQECGKSFGLKTALTSHQRTVHEGVKAFKCQECGKSFGHKTTLTSHQRTVHEGVKAFKCQECRKCFSTKSSLKRHQR 1152
+KS LT H+R VH G K F C +CGK+F K+ LT HQR+ H G K F+C ECGK+F HK+ LT HQRT H G K ++C C K F KS L +HQR
Sbjct: 340 EKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQR 433 HSP 15 Score: 82.8037 bits (203), Expect = 1.547e-16 Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 3
Query: 567 KPFKCNECGERFYQESTQTRHKRIH-KECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGKK 866
KP++CNECG+ F +S H+R H +E Y+C +C K + K+ LI H++ H G +P++C+EC K+FS K+ LT+H R H G K+ +C ECGK F +K
Sbjct: 635 KPYECNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLILHERK-HTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRK 733 HSP 16 Score: 80.8777 bits (198), Expect = 6.051e-16 Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 3
Query: 567 KPFKCNECGERFYQESTQTRHKRIHK-ECRYRCKQCDKCYNSKNNLIQHQKDFHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSF 857
K F+CN+CG+ F+++S T+H+R H E + C +C K ++ K+ L HQ+ H G +P++C+ C K F +K+ LT H+RT H G K +EC ECGKSF
Sbjct: 355 KHFQCNQCGKTFWEKSNLTKHQRSHTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSF 450 The following BLAST results are available for this feature:
BLAST of TCONS_00039567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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